Spata13 (spermatogenesis associated 13) - Rat Genome Database

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Gene: Spata13 (spermatogenesis associated 13) Rattus norvegicus
Analyze
Symbol: Spata13
Name: spermatogenesis associated 13
RGD ID: 1307364
Description: Predicted to enable guanyl-nucleotide exchange factor activity and identical protein binding activity. Predicted to be involved in cell migration; plasma membrane bounded cell projection assembly; and regulation of cell migration. Predicted to be located in several cellular components, including lamellipodium; podosome; and ruffle membrane. Predicted to be active in cytosol. Orthologous to human SPATA13 (spermatogenesis associated 13); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305938; spermatogenesis-associated protein 13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Spata13Tn(sb-T2/Bart3)2.267Mcwi
Genetic Models: F344-Spata13Tn(sb-T2/Bart3)2.267Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,954,585 - 39,083,752 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1538,810,386 - 39,083,755 (+)EnsemblGRCr8
mRatBN7.21534,778,479 - 34,907,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,778,473 - 34,905,114 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1536,639,905 - 36,765,712 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,790,530 - 37,916,332 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,239,655 - 36,365,236 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,937,652 - 41,066,645 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,937,708 - 41,066,769 (+)Ensemblrn6Rnor6.0
Rnor_5.01544,749,770 - 44,878,760 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41539,722,469 - 39,849,214 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1534,478,795 - 34,605,121 (+)NCBICelera
RGSC_v3.11539,806,342 - 39,864,914 (+)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP)
chlordecone  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
hydrogen cyanide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indometacin  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
paracetamol  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
propiconazole  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell projection  (IEA)
cytoplasm  (IEA,ISO)
cytosol  (IBA,ISO)
filopodium  (ISO)
lamellipodium  (ISO)
membrane  (IEA)
nucleoplasm  (ISO)
plasma membrane  (IEA)
podosome  (ISO)
ruffle membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:17145773   PMID:17599059   PMID:19151759   PMID:19934221   PMID:25750125  


Genomics

Comparative Map Data
Spata13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,954,585 - 39,083,752 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1538,810,386 - 39,083,755 (+)EnsemblGRCr8
mRatBN7.21534,778,479 - 34,907,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,778,473 - 34,905,114 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1536,639,905 - 36,765,712 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,790,530 - 37,916,332 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,239,655 - 36,365,236 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,937,652 - 41,066,645 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,937,708 - 41,066,769 (+)Ensemblrn6Rnor6.0
Rnor_5.01544,749,770 - 44,878,760 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41539,722,469 - 39,849,214 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1534,478,795 - 34,605,121 (+)NCBICelera
RGSC_v3.11539,806,342 - 39,864,914 (+)NCBI
Cytogenetic Map15p12NCBI
SPATA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381323,979,802 - 24,307,069 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1323,979,805 - 24,307,074 (+)Ensemblhg38GRCh38
GRCh38.p14 Ensembl1323,979,810 - 24,035,027 (+)Ensemblhg38GRCh38
GRCh371324,553,941 - 24,881,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361323,632,887 - 23,776,048 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341323,632,886 - 23,776,048NCBI
Celera135,797,087 - 5,943,877 (+)NCBICelera
Cytogenetic Map13q12.12NCBI
HuRef135,546,585 - 5,692,908 (+)NCBIHuRef
CHM1_11324,702,689 - 24,849,248 (+)NCBICHM1_1
T2T-CHM13v2.01323,186,689 - 23,514,163 (+)NCBIT2T-CHM13v2.0
Spata13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,722,617 - 61,002,005 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,871,450 - 61,002,005 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381460,485,168 - 60,764,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,634,001 - 60,764,556 (+)Ensemblmm10GRCm38
MGSCv371461,253,566 - 61,383,393 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361459,588,150 - 59,718,666 (+)NCBIMGSCv36mm8
Celera1458,411,392 - 58,543,017 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.77NCBI
Spata13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554974,224,374 - 4,307,335 (-)NCBIChiLan1.0ChiLan1.0
SPATA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21423,602,119 - 23,930,638 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11314,711,983 - 15,039,595 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,298,466 - 5,626,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11323,772,869 - 23,921,025 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1323,837,412 - 23,921,025 (+)EnsemblpanPan2panpan1.1
SPATA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,389,174 - 14,732,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,667,527 - 14,811,327 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02514,720,317 - 14,864,381 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,720,233 - 14,864,379 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,665,576 - 14,745,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,686,844 - 14,748,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,652,735 - 14,796,901 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Spata13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,635,240 - 116,957,681 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366881,514,443 - 1,568,747 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366881,433,231 - 1,569,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1112,806,674 - 3,161,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,160,029 - 2,281,822 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.133,767,078 - 4,085,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl33,932,482 - 4,085,375 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605740,409,981 - 40,742,603 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Spata13
595 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:138
Interacting mature miRNAs:155
Transcripts:ENSRNOT00000018407
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
D15Got33  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81538,979,629 - 38,979,746 (+)Marker Load Pipeline
mRatBN7.21534,803,505 - 34,803,622 (+)MAPPERmRatBN7.2
Rnor_6.01540,962,709 - 40,962,825NCBIRnor6.0
Rnor_5.01544,774,824 - 44,774,940UniSTSRnor5.0
RGSC_v3.41539,748,613 - 39,748,730RGDRGSC3.4
RGSC_v3.41539,748,614 - 39,748,730UniSTSRGSC3.4
Celera1534,504,124 - 34,504,240UniSTS
RGSC_v3.11539,764,314 - 39,764,430RGD
RH 3.4 Map15226.2RGD
RH 3.4 Map15226.2UniSTS
RH 2.0 Map15123.9RGD
Cytogenetic Map15p12UniSTS
D15Mco14  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81539,051,963 - 39,052,139 (+)Marker Load Pipeline
mRatBN7.21534,875,844 - 34,876,020 (+)MAPPERmRatBN7.2
Rnor_6.01541,035,266 - 41,035,441NCBIRnor6.0
Rnor_5.01544,847,381 - 44,847,556UniSTSRnor5.0
RGSC_v3.41539,820,949 - 39,821,125RGDRGSC3.4
RGSC_v3.41539,820,950 - 39,821,125UniSTSRGSC3.4
Celera1534,576,404 - 34,576,567UniSTS
RGSC_v3.11539,836,649 - 39,836,825RGD
Cytogenetic Map15p12UniSTS
BE119336  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21534,852,330 - 34,852,514 (+)MAPPERmRatBN7.2
Rnor_6.01541,011,678 - 41,011,861NCBIRnor6.0
Rnor_5.01544,823,793 - 44,823,976UniSTSRnor5.0
RGSC_v3.41539,797,436 - 39,797,619UniSTSRGSC3.4
Celera1534,552,982 - 34,553,165UniSTS
RH 3.4 Map15227.7UniSTS
Cytogenetic Map15p12UniSTS


Genetic Models
This gene Spata13 is modified in the following models/strains:
F344-Spata13Tn(sb-T2/Bart3)2.267Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018407   ⟹   ENSRNOP00000018406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,954,658 - 39,083,754 (+)Ensembl
mRatBN7.2 Ensembl1534,778,473 - 34,905,114 (+)Ensembl
Rnor_6.0 Ensembl1540,937,708 - 41,066,769 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114572   ⟹   ENSRNOP00000090978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,810,386 - 39,083,754 (+)Ensembl
mRatBN7.2 Ensembl1534,778,473 - 34,905,114 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115440   ⟹   ENSRNOP00000087721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1539,053,261 - 39,083,755 (+)Ensembl
mRatBN7.2 Ensembl1534,876,801 - 34,905,114 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000126067   ⟹   ENSRNOP00000106141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1539,021,557 - 39,083,754 (+)Ensembl
RefSeq Acc Id: NM_001191686   ⟹   NP_001178615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,954,658 - 39,080,228 (+)NCBI
mRatBN7.21534,778,536 - 34,904,114 (+)NCBI
Rnor_6.01540,937,731 - 41,063,117 (+)NCBI
Rnor_5.01544,749,770 - 44,878,760 (+)NCBI
Celera1534,478,795 - 34,605,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252113   ⟹   XP_006252175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,954,585 - 39,083,752 (+)NCBI
mRatBN7.21534,778,479 - 34,907,645 (+)NCBI
Rnor_6.01540,937,652 - 41,066,645 (+)NCBI
Rnor_5.01544,749,770 - 44,878,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252114   ⟹   XP_006252176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81539,010,820 - 39,083,752 (+)NCBI
mRatBN7.21534,844,156 - 34,907,645 (+)NCBI
Rnor_6.01541,002,904 - 41,066,645 (+)NCBI
Rnor_5.01544,749,770 - 44,878,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252115   ⟹   XP_006252177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81539,052,586 - 39,083,752 (+)NCBI
mRatBN7.21534,876,067 - 34,907,645 (+)NCBI
Rnor_6.01541,035,379 - 41,066,645 (+)NCBI
Rnor_5.01544,749,770 - 44,878,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093323   ⟹   XP_038949251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81539,043,590 - 39,083,752 (+)NCBI
mRatBN7.21534,867,449 - 34,907,645 (+)NCBI
RefSeq Acc Id: NP_001178615   ⟸   NM_001191686
- Sequence:
RefSeq Acc Id: XP_006252175   ⟸   XM_006252113
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252176   ⟸   XM_006252114
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006252177   ⟸   XM_006252115
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000018406   ⟸   ENSRNOT00000018407
RefSeq Acc Id: XP_038949251   ⟸   XM_039093323
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000087721   ⟸   ENSRNOT00000115440
Ensembl Acc Id: ENSRNOP00000090978   ⟸   ENSRNOT00000114572
Ensembl Acc Id: ENSRNOP00000106141   ⟸   ENSRNOT00000126067
Protein Domains
DH   PH   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWB4-F1-model_v2 AlphaFold D3ZWB4 1-1245 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699736
Promoter ID:EPDNEW_R10260
Type:initiation region
Name:Spata13_1
Description:spermatogenesis associated 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01540,937,698 - 40,937,758EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307364 AgrOrtholog
BioCyc Gene G2FUF-13519 BioCyc
Ensembl Genes ENSRNOG00000013707 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018407.8 UniProtKB/TrEMBL
  ENSRNOT00000114572 ENTREZGENE
  ENSRNOT00000114572.1 UniProtKB/TrEMBL
  ENSRNOT00000115440 ENTREZGENE
  ENSRNOT00000115440.1 UniProtKB/TrEMBL
  ENSRNOT00000126067 ENTREZGENE
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  GDS_CDC24_CS UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SOS1_NGEF_PH UniProtKB/TrEMBL
NCBI Gene 305938 ENTREZGENE
PANTHER RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED 13 UniProtKB/TrEMBL
Pfam RhoGEF UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
  SOS1_NGEF_PH UniProtKB/TrEMBL
PhenoGen Spata13 PhenoGen
PROSITE DH_1 UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013707 RatGTEx
SMART RhoGEF UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
UniProt A0A8I6A3P0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACW7 ENTREZGENE, UniProtKB/TrEMBL
  A6K6A4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWB4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Spata13  spermatogenesis associated 13   Spata13_predicted  spermatogenesis associated 13 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Spata13_predicted  spermatogenesis associated 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED