Tnfrsf21 (TNF receptor superfamily member 21) - Rat Genome Database

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Gene: Tnfrsf21 (TNF receptor superfamily member 21) Rattus norvegicus
Analyze
Symbol: Tnfrsf21
Name: TNF receptor superfamily member 21
RGD ID: 1307308
Description: Involved in axonal fasciculation. Predicted to be located in axon and plasma membrane. Orthologous to human TNFRSF21 (TNF receptor superfamily member 21); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: death receptor 6; LOC316256; tumor necrosis factor receptor superfamily member 21; tumor necrosis factor receptor superfamily, member 21
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8925,376,400 - 25,451,323 (-)NCBIGRCr8
mRatBN7.2917,879,156 - 17,954,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl917,879,156 - 17,954,085 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx926,464,727 - 26,539,338 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0931,539,288 - 31,613,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0929,829,984 - 29,904,528 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0920,546,159 - 20,621,051 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,546,159 - 20,621,051 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0919,419,628 - 19,494,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,587,961 - 13,666,380 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1913,587,217 - 13,769,016 (-)NCBI
Celera915,587,091 - 15,661,770 (-)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-methylcholanthrene  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
Archazolid B  (ISO)
arsenous acid  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzoates  (ISO)
biochanin A  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Butylparaben  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethanol  (ISO)
ethylparaben  (ISO)
fenofibrate  (ISO)
fenvalerate  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
maneb  (ISO)
melittin  (ISO)
mercury dibromide  (ISO)
metformin  (EXP,ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
ozone  (EXP)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
phenol  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
pyrethrins  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vemurafenib  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (ISO)
plasma membrane  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Death Receptor 6 and Caspase-6 Regulate Prion Peptide-Induced Axonal Degeneration in Rat Spinal Neurons. Wang Y, etal., J Mol Neurosci. 2015 Aug;56(4):966-976. doi: 10.1007/s12031-015-0562-1. Epub 2015 Apr 22.
Additional References at PubMed
PMID:11485735   PMID:12515813   PMID:19654028   PMID:21725297   PMID:22761420   PMID:23559013   PMID:26244598  


Genomics

Comparative Map Data
Tnfrsf21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8925,376,400 - 25,451,323 (-)NCBIGRCr8
mRatBN7.2917,879,156 - 17,954,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl917,879,156 - 17,954,085 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx926,464,727 - 26,539,338 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0931,539,288 - 31,613,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0929,829,984 - 29,904,528 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0920,546,159 - 20,621,051 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,546,159 - 20,621,051 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0919,419,628 - 19,494,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,587,961 - 13,666,380 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1913,587,217 - 13,769,016 (-)NCBI
Celera915,587,091 - 15,661,770 (-)NCBICelera
Cytogenetic Map9q13NCBI
TNFRSF21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38647,231,532 - 47,309,905 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl647,231,532 - 47,309,905 (-)EnsemblGRCh38hg38GRCh38
GRCh37647,199,268 - 47,277,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36647,307,227 - 47,385,639 (-)NCBINCBI36Build 36hg18NCBI36
Build 34647,307,227 - 47,385,639NCBI
Celera648,751,647 - 48,830,057 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef646,922,187 - 47,000,607 (-)NCBIHuRef
CHM1_1647,202,168 - 47,280,589 (-)NCBICHM1_1
T2T-CHM13v2.0647,068,690 - 47,147,063 (-)NCBIT2T-CHM13v2.0
Tnfrsf21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391743,327,446 - 43,400,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1743,327,446 - 43,400,080 (+)EnsemblGRCm39 Ensembl
GRCm381743,016,555 - 43,089,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1743,016,555 - 43,089,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv371743,153,504 - 43,226,137 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361742,480,039 - 42,552,546 (+)NCBIMGSCv36mm8
Celera1746,437,745 - 46,511,566 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1719.69NCBI
Tnfrsf21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,876,895 - 11,915,460 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543711,877,051 - 11,915,220 (-)NCBIChiLan1.0ChiLan1.0
TNFRSF21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2561,728,356 - 61,808,918 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1657,594,589 - 57,675,179 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0646,815,762 - 46,894,286 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1648,079,749 - 48,158,356 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl648,079,749 - 48,158,356 (-)Ensemblpanpan1.1panPan2
TNFRSF21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11215,343,953 - 15,408,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1215,378,311 - 15,451,582 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01215,849,878 - 15,923,408 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11215,358,307 - 15,431,830 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01215,451,469 - 15,524,837 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01215,597,718 - 15,671,239 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494650,765,997 - 50,834,940 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647613,125,042 - 13,194,232 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647613,125,269 - 13,194,205 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl742,020,227 - 42,091,448 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1742,020,219 - 42,091,521 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2748,679,152 - 48,748,972 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11724,981,649 - 25,053,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1724,981,540 - 25,055,897 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604447,247,715 - 47,321,445 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475413,567,734 - 13,634,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475413,567,898 - 13,633,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnfrsf21
533 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:145
Interacting mature miRNAs:166
Transcripts:ENSRNOT00000015918
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat

Markers in Region
RH130936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2917,880,091 - 17,880,573 (+)MAPPERmRatBN7.2
Rnor_6.0920,547,095 - 20,547,573NCBIRnor6.0
Rnor_5.0919,420,564 - 19,421,042UniSTSRnor5.0
RGSC_v3.4913,588,897 - 13,589,375UniSTSRGSC3.4
Celera915,588,027 - 15,588,505UniSTS
RH 3.4 Map9137.8UniSTS
Cytogenetic Map9q12UniSTS
AW535277  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2917,924,473 - 17,924,653 (+)MAPPERmRatBN7.2
Rnor_6.0920,591,681 - 20,591,860NCBIRnor6.0
Rnor_5.0919,464,889 - 19,465,068UniSTSRnor5.0
RGSC_v3.4913,634,697 - 13,634,876UniSTSRGSC3.4
Celera915,632,253 - 15,632,432UniSTS
RH 3.4 Map9154.0UniSTS
Cytogenetic Map9q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 14 5 14 6 9 74 35 27 11 6
Low 43 43 27 14 27 2 2 14 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000015918   ⟹   ENSRNOP00000015918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl917,879,156 - 17,954,085 (-)Ensembl
Rnor_6.0 Ensembl920,546,159 - 20,621,051 (-)Ensembl
RefSeq Acc Id: NM_001108207   ⟹   NP_001101677
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8925,376,400 - 25,451,323 (-)NCBI
mRatBN7.2917,879,156 - 17,954,085 (-)NCBI
Rnor_6.0920,546,159 - 20,621,051 (-)NCBI
Rnor_5.0919,419,628 - 19,494,259 (-)NCBI
RGSC_v3.4913,587,961 - 13,666,380 (-)RGD
Celera915,587,091 - 15,661,770 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101677 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZF92 (Get FASTA)   NCBI Sequence Viewer  
  EDM18686 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015918
  ENSRNOP00000015918.5
  ENSRNOP00055027825
  ENSRNOP00060031376
  ENSRNOP00065035587
RefSeq Acc Id: NP_001101677   ⟸   NM_001108207
- Peptide Label: precursor
- UniProtKB: D3ZF92 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015918   ⟸   ENSRNOT00000015918
Protein Domains
Death

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF92-F1-model_v2 AlphaFold D3ZF92 1-655 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696563
Promoter ID:EPDNEW_R7088
Type:initiation region
Name:Tnfrsf21_1
Description:TNF receptor superfamily member 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0920,621,017 - 20,621,077EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307308 AgrOrtholog
BioCyc Gene G2FUF-28097 BioCyc
Ensembl Genes ENSRNOG00000011517 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055020124 UniProtKB/Swiss-Prot
  ENSRNOG00060021980 UniProtKB/Swiss-Prot
  ENSRNOG00065025203 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015918 ENTREZGENE
  ENSRNOT00000015918.6 UniProtKB/Swiss-Prot
  ENSRNOT00055034353 UniProtKB/Swiss-Prot
  ENSRNOT00060038073 UniProtKB/Swiss-Prot
  ENSRNOT00065043392 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.533.10 UniProtKB/Swiss-Prot
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot
InterPro DEATH-like_dom_sf UniProtKB/Swiss-Prot
  Death_domain UniProtKB/Swiss-Prot
  TNFR/NGFR_Cys_rich_reg UniProtKB/Swiss-Prot
  TNFR_21 UniProtKB/Swiss-Prot
  TNFRSF21_death UniProtKB/Swiss-Prot
  TNFRSF21_N UniProtKB/Swiss-Prot
KEGG Report rno:316256 UniProtKB/Swiss-Prot
NCBI Gene 316256 ENTREZGENE
PANTHER PTHR46921 UniProtKB/Swiss-Prot
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 21 UniProtKB/Swiss-Prot
Pfam Death UniProtKB/Swiss-Prot
  TNFR_c6 UniProtKB/Swiss-Prot
PhenoGen Tnfrsf21 PhenoGen
PRINTS TNFACTORR21 UniProtKB/Swiss-Prot
PROSITE DEATH_DOMAIN UniProtKB/Swiss-Prot
  TNFR_NGFR_1 UniProtKB/Swiss-Prot
  TNFR_NGFR_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011517 RatGTEx
  ENSRNOG00055020124 RatGTEx
  ENSRNOG00060021980 RatGTEx
  ENSRNOG00065025203 RatGTEx
SMART DEATH UniProtKB/Swiss-Prot
  Ephrin_rec_like UniProtKB/Swiss-Prot
  TNFR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47986 UniProtKB/Swiss-Prot
  TNF receptor-like UniProtKB/Swiss-Prot
UniProt D3ZF92 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 Tnfrsf21  TNF receptor superfamily member 21  Tnfrsf21  tumor necrosis factor receptor superfamily, member 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tnfrsf21  tumor necrosis factor receptor superfamily, member 21   Tnfrsf21_predicted  tumor necrosis factor receptor superfamily, member 21 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tnfrsf21_predicted  tumor necrosis factor receptor superfamily, member 21 (predicted)      Symbol and Name status set to approved 70820 APPROVED