Arhgap22 (Rho GTPase activating protein 22)

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Gene: Arhgap22 (Rho GTPase activating protein 22) Rattus norvegicus

Analyze

Symbol:

Arhgap22

Name:

Rho GTPase activating protein 22

RGD ID:

1307237

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in regulation of postsynapse organization. Predicted to be active in glutamatergic synapse. Orthologous to human ARHGAP22 (Rho GTPase activating protein 22); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC306279; rho GTPase-activating protein 22

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	8,473,806 - 8,631,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	8,476,306 - 8,631,548 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	8,600,860 - 8,650,867 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	9,745,577 - 9,795,573 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	8,595,355 - 8,645,379 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	9,454,269 - 9,613,508 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	9,486,832 - 9,613,528 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	11,414,640 - 11,572,157 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	8,863,537 - 8,913,459 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	8,866,751 - 8,913,458 (+)	NCBI
Celera	16	6,575,743 - 6,625,300 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

long QT syndrome (ISO)

megacolon (ISO)

pneumoconiosis (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-diaminotoluene (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

L-methionine (ISO)

lead(0) (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

Soman (EXP)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of postsynapse organization (ISO)

signal transduction (IEA)

Cellular Component

glutamatergic synapse (ISO)

Molecular Function

GTPase activator activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21423176	PMID:21926414

Genomics

Comparative Map Data

Arhgap22
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	8,473,806 - 8,631,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	8,476,306 - 8,631,548 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	8,600,860 - 8,650,867 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	9,745,577 - 9,795,573 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	8,595,355 - 8,645,379 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	9,454,269 - 9,613,508 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	9,486,832 - 9,613,528 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	11,414,640 - 11,572,157 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	8,863,537 - 8,913,459 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	8,866,751 - 8,913,458 (+)	NCBI
Celera	16	6,575,743 - 6,625,300 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

ARHGAP22
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	48,429,831 - 48,656,265 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	48,446,036 - 48,656,265 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	49,654,079 - 49,864,310 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	49,324,085 - 49,483,144 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	49,324,085 - 49,483,144	NCBI
Celera	10	43,239,986 - 43,398,967 (-)	NCBI		Celera
Cytogenetic Map	10	q11.22-q11.23	NCBI
HuRef	10	43,918,892 - 44,129,417 (-)	NCBI		HuRef
CHM1_1	10	49,935,899 - 50,146,144 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	49,275,552 - 49,505,563 (-)	NCBI		T2T-CHM13v2.0

Arhgap22
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	32,935,952 - 33,091,893 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	32,935,983 - 33,091,891 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	33,213,994 - 33,369,936 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	33,214,026 - 33,369,934 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	34,030,009 - 34,183,122 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	32,045,915 - 32,199,025 (+)	NCBI		MGSCv36	mm8
Celera	14	29,476,997 - 29,628,675 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	20.15	NCBI

Arhgap22
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955556	1,501,773 - 1,588,604 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955556	1,462,366 - 1,588,589 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP22
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	10	60,682,205 - 60,930,486 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	45,589,509 - 45,833,137 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ARHGAP22
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	419,532 - 555,511 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	419,838 - 582,548 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	648,824 - 784,583 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	595,180 - 731,152 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	595,483 - 758,607 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	394,859 - 530,643 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	436,100 - 571,773 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	561,465 - 697,162 (-)	NCBI		UU_Cfam_GSD_1.0

Arhgap22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	80,366,892 - 80,562,523 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936728	1,573,288 - 1,765,505 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936728	1,633,385 - 1,765,345 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP22
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	89,113,768 - 89,331,274 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	89,113,774 - 89,331,629 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	96,946,248 - 97,088,885 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP22
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	43,140,076 - 43,349,962 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	43,316,598 - 43,349,602 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	2,901,664 - 3,117,756 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap22
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624928	1,265,592 - 1,433,947 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arhgap22
1338 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	56
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000035915
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat

Markers in Region

D16Rat83

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	8,627,567 - 8,627,782 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	9,609,524 - 9,609,738	NCBI	Rnor6.0
Rnor_5.0	16	11,568,173 - 11,568,387	UniSTS	Rnor5.0
RGSC_v3.4	16	8,909,479 - 8,909,694	RGD	RGSC3.4
RGSC_v3.4	16	8,909,480 - 8,909,694	UniSTS	RGSC3.4
RGSC_v3.1	16	8,909,478 - 8,909,692	RGD
Celera	16	6,579,508 - 6,579,722	UniSTS
RH 3.4 Map	16	84.5	UniSTS
RH 3.4 Map	16	84.5	RGD
SHRSP x BN Map	16	3.4	UniSTS
SHRSP x BN Map	16	3.4	RGD
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										1	5	2
Low	3	43	47	31	19	31	8	11	74	34	36	9	8
Below cutoff			10	10		10

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000035915 ⟹ ENSRNOP00000033034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	8,581,784 - 8,631,547 (+)	Ensembl
Rnor_6.0 Ensembl	16	9,563,218 - 9,613,503 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082208 ⟹ ENSRNOP00000068839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	8,506,247 - 8,631,548 (+)	Ensembl
Rnor_6.0 Ensembl	16	9,486,832 - 9,613,528 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101853 ⟹ ENSRNOP00000096403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	8,476,306 - 8,631,548 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104962 ⟹ ENSRNOP00000078254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	8,528,948 - 8,631,548 (+)	Ensembl

RefSeq Acc Id:

NM_001107297 ⟹ NP_001100767

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,581,784 - 8,631,547 (+)	NCBI
Rnor_6.0	16	9,563,218 - 9,613,503 (+)	NCBI
Rnor_5.0	16	11,414,640 - 11,572,157 (+)	NCBI
RGSC_v3.4	16	8,863,537 - 8,913,459 (+)	RGD
Celera	16	6,575,743 - 6,625,300 (-)	RGD

Sequence:

show sequence

GGAGTCCCGGTTCGCCCCACGAGCCCAGGGGGCTAGTGCGGGCCAGCCAGGCCGCTCCGGGGGT
GTCGACGGGGGCGGGGAGCGGAGGCGAGCGGCCGGGGAGAGGCGGTGCCATGGGGCTGTGCTGC
TGCAAGGACTGGAGAGGACACCTGCGAGCGCCCAAAGGCGGTGCCGCAGAGCGGGAGAAGGTGC
CAGCCAATCCTGAGGCGCTCCTGCTCATGGCCAGCTCCCAGCGTGATATGGAGGACTGGGTGCA
GGCCATCCGCCGAGTCATCTGGGCCCCGCTGGGCGGAGGGATCTTTGGGCAGCGACTGGAGGAC
ACAGTGCACCATGAGCGGAAGTTTGGTCCCCGGCTGGCACCTCTGCTGGTGGAGCAGTGTGTGG
ACTTCATCCGGGAGCGAGGACTCAGTGAAGAGGGGCTCTTCCGTATGCCCGGCCAGGCCAACCT
GGTGAGGGACCTGCAGGATTCCTTCGACTGTGGGGAGAAGCCGCTGTTTGACAGGTTTCTGGAT
GAAGTGCAGGCCCACTCAGACGTCAACAAGATGAGCGTCCAGAACTTGGCAACTGTCTTTGGCC
CTAACATCCTCCGGCCACAGGTGGAGGATCCAGTCACCATCATGGAAGGCACATCTTTGGTTCA
GCATCTGATGACTGTCCTCATCCGAAAACACGGACAGCTCTTTGCCACGCCCTCCTTTGAAGAA
CCTGCTTCACCACGTGGTACTGTCCAGGGCACAGTAGAGTGGGGCTCTGAAGAGGTCACCAGAG
ACCACCAGGGCGAGCCTGGGAGCTCTGGCTTGCCCACACACAGGACTTCCTCTCTGGATGGGCC
AGCTGCAGCAGTGCTCTCTAGAACTTCTCCGCCACGCCTTGGCAGCCAAGCCGGCCCTGCGGCC
ACCAGCCCTGGGAAGAGGATGCATACTTTGCCTGGCTGGAAGTCTTCTTTTCGGCAGCAGGGGT
CCCGGTCAGAGAGCCCAAAGGGGGTCAGCTCATCCTTAGAGGTACCCATCATCTCCTCTGGTGG
GAACTGGCTCATAAACGGGCTATCGTCTCTTCGCAGCCACCGTCGGGCCTCATCAGGGGACCGG
CTTAAGGATACAGGCTCAGCACAGAGACTCTCCACCTATGATAACGTGCCACCATCCAGCCACC
TTTCTAGCACTGCCAGCGTGGCCAGCACGGCATGGTCTGTAGCCTCATCCTCCCGAGAGGCCTC
CATCGGCAGCTGCACTGCCTGCCGGGCCAGCAACTCTTCTGCCTGCAGCTCCTTACACACTGAG
TGGGCACTCGAGCCCTCTCCTCTCCCCAGCAGCAGTGAGGGCCACCCGTCCCCGGACCTGGGCC
ACAGCTTGGATGAGGCATGTGTGGGCAGTGGCAGCAGTGAGCCCAATGACCCGGGCAGTCCCTC
ACAGGCCCATGTTCGCCGCTGCCGGGCTCTCCAGGGCCAGGTGGCCGAGCTCAGGGCGGAGCTG
TGTCACCAGAGGATTGAGTACCAGAGGAGCCTGAAAAGCATCGAGGAGGGCAATTCTGACCTGC
GGAAGCAGATGTGTCGGTTGGAAGAGGAGCTGGACCAGGAGAAGAAGAAGTATGCCATGCTGGA
GATCAAGCTTCGGAACTCCGAGCGAGCACGTGAGGACGCAGAGCGCAGGAACCAGTTGCTGCAG
AGGGAGATGGAGGAGTTCTTCGCCACCCTGGGAAGCTTGACTGCTGGGACCAAAGGGGCCAGAG
CCCCAGAGTGAAAGGAGCGGAAGCGCATGTCCACCTATGTCCACTCACTTTCCCTGCAGGGCTG
GCCACAGGCTGCAGAGGAAGCCGGGAGCTTCAAGTTTGGGCCAGGCCACCAGCAGGGTCATCTG
CCTCCAAGTGCCAGATAGAGAGGGGCCTGACGCCAGAATGGGTACTGTCAGGATCCCACATAGT
CCAGGCAGGATCTGGATACTTCTCCACACATACGGGTCCCAGGAGGTGTCAGGGGCGATGGTGC
CAAGATCATGAGCATCAGCCTCTCCTCCAGGAAGAGTCAGTCCCCAGTGGCCACCTGGAGAGCC
AGGCCACCGCCAAGAACTATTAAATGTGCTCTGAAAGC

hide sequence

RefSeq Acc Id:

XM_006252751 ⟹ XP_006252813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,613,123 - 8,631,552 (+)	NCBI
Rnor_6.0	16	9,594,300 - 9,613,508 (+)	NCBI
Rnor_5.0	16	11,414,640 - 11,572,157 (+)	NCBI

Sequence:

show sequence

AGAGAGAGAGAGAGAGAGAGATTAATTATCTTTTAAAGCTATTCAAGGAGATGAGATAAACTCC
AAACAATTTCTACTAACCCTAGGGGTTTCTACTAACCATAGGGATACTGGCTTCAAGAGGGTCC
GAGACCTGGAAGCCTGGAGTGCGGAGCCCTCCACGCCACTGTTGCTTTAGGTGGGGCATCAATG
CCCTGCTCGCAGGTTGACTCAGATCCAGTTGCCCAATCCTCTCCCGCCTCCCTTGCACCATCTA
GAACTCGTGCCTTGGCCTGTGTGGCTGTTCCTCAAGAGGGTCCCCAGCTAGAACGAAGTGATTG
CGTGGAAAGCTGCTGCGATTTCGGAGCTCCTGATAGCGGGGCGCAGCCTGAGAAAGGGGTGAGA
ACCGGGAGCTCCCAGCGCTAGGAGCTGCCTGGCAGTAGGCATCCCAGGCACTCAATCCTCCCGC
CCTCGCCCCAGGTCCAGCCCTGGGCGGCTCAGGCCGGGCGGGCGGCGGGCAAGACGCTACCTGT
GCGCGTGCCGGGCATTCCAGCCGCCGCTGCGCCGCCGCGCCCGGGCGCGCCATGGGCCTGATGC
CGGCCGCGCGGGCTTTCTCGAGCTGCCGCGTCTGCCCGCTGCCGCCCTGCCGCCTGCCTGCCTG
CTGCGCGCCAGCTGCCCCAGGGATCTTTGGGCAGCGACTGGAGGACACAGTGCACCATGAGCGG
AAGTTTGGTCCCCGGCTGGCACCTCTGCTGGTGGAGCAGTGTGTGGACTTCATCCGGGAGCGAG
GACTCAGTGAAGAGGGGCTCTTCCGTATGCCCGGCCAGGCCAACCTGGTGAGGGACCTGCAGGA
TTCCTTCGACTGTGGGGAGAAGCCGCTGTTTGACAGCACCACAGACGTGCACACAGTGGCCTCC
TTGCTGAAGCTCTACCTTCGGGAGCTCCCGGAGCCGGTCATCCCTTTCGCCAGGTATGAGGACT
TCCTCAGCTGCGCCCAGCTGCTCACCAAGGACGAGGGGGAGGGGACCGTGGAGTTGGCGAAACA
AGTGAGCAACCTTCCTCAGGCCAACTACAACCTGCTCAGATACATCTGCAGGTTTCTGGATGAA
GTGCAGGCCCACTCAGACGTCAACAAGATGAGCGTCCAGAACTTGGCAACTGTCTTTGGCCCTA
ACATCCTCCGGCCACAGGTGGAGGATCCAGTCACCATCATGGAAGGCACATCTTTGGTTCAGCA
TCTGATGACTGTCCTCATCCGAAAACACGGACAGCTCTTTGCCACGCCCTCCTTTGAAGAACCT
GCTTCACCACGTGGTACTGTCCAGGGCACAGTAGAGTGGGGCTCTGAAGAGGTCACCAGAGACC
ACCAGGGCGAGCCTGGGAGCTCTGGCTTGCCCACACACAGGACTTCCTCTCTGGATGGGCCAGC
TGCAGCAGTGCTCTCTAGAACTTCTCCGCCACGCCTTGGCAGCCAAGCCGGCCCTGCGGCCACC
AGCCCTGGGAAGAGGATGCATACTTTGCCTGGCTGGAAGTCTTCTTTTCGGCAGCAGGGGTCCC
GGTCAGAGAGCCCAAAGGGGGTCAGCTCATCCTTAGAGGTACCCATCATCTCCTCTGGTGGGAA
CTGGCTCATAAACGGGCTATCGTCTCTTCGCAGCCACCGTCGGGCCTCATCAGGGGACCGGCTT
AAGGATACAGGCTCAGCACAGAGACTCTCCACCTATGATAACGTGCCACCATCCAGCCACCTTT
CTAGCACTGCCAGCGTGGCCAGCACGGCATGGTCTGTAGCCTCATCCTCCCGAGAGGCCTCCAT
CGGCAGCTGCACTGCCTGCCGGGCCAGCAACTCTTCTGCCTGCAGCTCCTTACACACTGAGTGG
GCACTCGAGCCCTCTCCTCTCCCCAGCAGCAGTGAGGGCCACCCGTCCCCGGACCTGGGCCACA
GCTTGGATGAGGCATGTGTGGGCAGTGGCAGCAGTGAGCCCAATGACCCGGGCAGTCCCTCACA
GGCCCATGTTCGCCGCTGCCGGGCTCTCCAGGGCCAGGTGGCCGAGCTCAGGGCGGAGCTGTGT
CACCAGAGGATTGAGTACCAGAGGAGCCTGAAAAGCATCGAGGAGGGCAATTCTGACCTGCGGA
AGCAGATGTGTCGGTTGGAAGAGGAGCTGGACCAGGAGAAGAAGAAGTATGCCATGCTGGAGAT
CAAGCTTCGGAACTCCGAGCGAGCACGTGAGGACGCAGAGCGCAGGAACCAGTTGCTGCAGAGG
GAGATGGAGGAGTTCTTCGCCACCCTGGGAAGCTTGACTGCTGGGACCAAAGGGGCCAGAGCCC
CAGAGTGAAAGGAGCGGAAGCGCATGTCCACCTATGTCCACTCACTTTCCCTGCAGGGCTGGCC
ACAGGCTGCAGAGGAAGCCGGGAGCTTCAAGTTTGGGCCAGGCCACCAGCAGGGTCATCTGCCT
CCAAGTGCCAGATAGAGAGGGGCCTGACGCCAGAATGGGTACTGTCAGGATCCCACATAGTCCA
GGCAGGATCTGGATACTTCTCCACACATACGGGTCCCAGGAGGTGTCAGGGGCGATGGTGCCAA
GATCATGAGCATCAGCCTCTCCTCCAGGAAGAGTCAGTCCCCAGTGGCCACCTGGAGAGCCAGG
CCACCGCCAAGAACTATTAAATGTGCTCTGAAAGCATGGA

hide sequence

RefSeq Acc Id:

XM_017600084 ⟹ XP_017455573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,476,445 - 8,631,552 (+)	NCBI
Rnor_6.0	16	9,454,269 - 9,613,508 (+)	NCBI

Sequence:

show sequence

GAGGCCAGCCAAGGACAGCTGTCAGAGCATCATCCCCAGAGGCATCGAGGAGACAGGAAACCTG
CATCCTGCCTGATGATGTTCAGCCTGGGTTGCATCCCCTGGTCCTACCAGCGGGCTCGACCCAT
GGGAGCCAGGGGCAGGGCCAAAGGCAGGGCGCCCACAGGGTGAGAAGAGGGGCGGCAGCCCAAG
TGCTCCCTCCGGGCGCCGAAGAAGGAGCCCCCGGAGGCTCGGGCAAAGGCAGAGAAGCCTGCTC
TCCAGGTCCAGATGAGCAGAGGTGAAACCCAGATGCTGATCGCCCGCTGCTGAAACCGGGAATT
AGCTCGTCTCTCTGAGGATGTGGCTGCTGCCTTCCAGAGAAGATACAGGAGAAATCTGCACGCT
GCCAGCTTAGAGATGCTGCCGGCGGCTTCCAGCAAAAGAAGAACCTTCGCCTCCAGATACTTCA
CTCGCTCCAAGAGCCTGGTGATGGGGGAACAGAGCCGGAGCCCAGGGAGGCCCCTGGCCCCCCA
CAAGCTGGGCCCTGTACTCAAAGCCGGCTGGCTGAGGAAGCAGAAGAGCATCATGAAGAACTGG
CAGCAGCGGTGGTTTGTGCTGCGTGGGGATCAGCTCTTCTACTACAAAGACAAAGATGAGGGCA
AGCCCCAGGGATTTATTTCTCTACAAGGGACACAAGTGACTGAGCTTCTTCCAGACCCTGACGA
CCCAGGAAAGCACCTGTTTGAGATTACACCAGGCGGTGCCGCAGAGCGGGAGAAGGTGCCAGCC
AATCCTGAGGCGCTCCTGCTCATGGCCAGCTCCCAGCGTGATATGGAGGACTGGGTGCAGGCCA
TCCGCCGAGTCATCTGGGCCCCGCTGGGCGGAGGGATCTTTGGGCAGCGACTGGAGGACACAGT
GCACCATGAGCGGAAGTTTGGTCCCCGGCTGGCACCTCTGCTGGTGGAGCAGTGTGTGGACTTC
ATCCGGGAGCGAGGACTCAGTGAAGAGGGGCTCTTCCGTATGCCCGGCCAGGCCAACCTGGTGA
GGGACCTGCAGGATTCCTTCGACTGTGGGGAGAAGCCGCTGTTTGACAGCACCACAGACGTGCA
CACAGTGGCCTCCTTGCTGAAGCTCTACCTTCGGGAGCTCCCGGAGCCGGTCATCCCTTTCGCC
AGGTATGAGGACTTCCTCAGCTGCGCCCAGCTGCTCACCAAGGACGAGGGGGAGGGGACCGTGG
AGTTGGCGAAACAAGTGAGCAACCTTCCTCAGGCCAACTACAACCTGCTCAGATACATCTGCAG
GTTTCTGGATGAAGTGCAGGCCCACTCAGACGTCAACAAGATGAGCGTCCAGAACTTGGCAACT
GTCTTTGGCCCTAACATCCTCCGGCCACAGGTGGAGGATCCAGTCACCATCATGGAAGGCACAT
CTTTGGTTCAGCATCTGATGACTGTCCTCATCCGAAAACACGGACAGCTCTTTGCCACGCCCTC
CTTTGAAGAACCTGCTTCACCACGTGGTACTGTCCAGGGCACAGTAGAGTGGGGCTCTGAAGAG
GTCACCAGAGACCACCAGGGCGAGCCTGGGAGCTCTGGCTTGCCCACACACAGGACTTCCTCTC
TGGATGGGCCAGCTGCAGCAGTGCTCTCTAGAACTTCTCCGCCACGCCTTGGCAGCCAAGCCGG
CCCTGCGGCCACCAGCCCTGGGAAGAGGATGCATACTTTGCCTGGCTGGAAGTCTTCTTTTCGG
CAGCAGGGGTCCCGGTCAGAGAGCCCAAAGGGGGTCAGCTCATCCTTAGAGGTACCCATCATCT
CCTCTGGTGGGAACTGGCTCATAAACGGGCTATCGTCTCTTCGCAGCCACCGTCGGGCCTCATC
AGGGGACCGGCTTAAGGATACAGGCTCAGCACAGAGACTCTCCACCTATGATAACGTGCCACCA
TCCAGCCACCTTTCTAGCACTGCCAGCGTGGCCAGCACGGCATGGTCTGTAGCCTCATCCTCCC
GAGAGGCCTCCATCGGCAGCTGCACTGCCTGCCGGGCCAGCAACTCTTCTGCCTGCAGCTCCTT
ACACACTGAGTGGGCACTCGAGCCCTCTCCTCTCCCCAGCAGCAGTGAGGGCCACCCGTCCCCG
GACCTGGGCCACAGCTTGGATGAGGCATGTGTGGGCAGTGGCAGCAGTGAGCCCAATGACCCGG
GCAGTCCCTCACAGGCCCATGTTCGCCGCTGCCGGGCTCTCCAGGGCCAGGTGGCCGAGCTCAG
GGCGGAGCTGTGTCACCAGAGGATTGAGTACCAGAGGAGCCTGAAAAGCATCGAGGAGGGCAAT
TCTGACCTGCGGAAGCAGATGTGTCGGTTGGAAGAGGAGCTGGACCAGGAGAAGAAGAAGTATG
CCATGCTGGAGATCAAGCTTCGGAACTCCGAGCGAGCACGTGAGGACGCAGAGCGCAGGAACCA
GTTGCTGCAGAGGGAGATGGAGGAGTTCTTCGCCACCCTGGGAAGCTTGACTGCTGGGACCAAA
GGGGCCAGAGCCCCAGAGTGAAAGGAGCGGAAGCGCATGTCCACCTATGTCCACTCACTTTCCC
TGCAGGGCTGGCCACAGGCTGCAGAGGAAGCCGGGAGCTTCAAGTTTGGGCCAGGCCACCAGCA
GGGTCATCTGCCTCCAAGTGCCAGATAGAGAGGGGCCTGACGCCAGAATGGGTACTGTCAGGAT
CCCACATAGTCCAGGCAGGATCTGGATACTTCTCCACACATACGGGTCCCAGGAGGTGTCAGGG
GCGATGGTGCCAAGATCATGAGCATCAGCCTCTCCTCCAGGAAGAGTCAGTCCCCAGTGGCCAC
CTGGAGAGCCAGGCCACCGCCAAGAACTATTAAATGTGCTCTGAAAGCATGGA

hide sequence

RefSeq Acc Id:

XM_039094464 ⟹ XP_038950392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,476,179 - 8,631,200 (+)	NCBI

RefSeq Acc Id:

XM_039094465 ⟹ XP_038950393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,476,445 - 8,631,552 (+)	NCBI

RefSeq Acc Id:

XM_039094466 ⟹ XP_038950394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,473,806 - 8,631,200 (+)	NCBI

RefSeq Acc Id:

XM_039094467 ⟹ XP_038950395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,504,998 - 8,631,548 (+)	NCBI

RefSeq Acc Id:

XM_039094468 ⟹ XP_038950396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,476,709 - 8,631,552 (+)	NCBI

RefSeq Acc Id:

XM_039094469 ⟹ XP_038950397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	8,612,955 - 8,631,552 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100767	(Get FASTA)	NCBI Sequence Viewer
	XP_006252813	(Get FASTA)	NCBI Sequence Viewer
	XP_017455573	(Get FASTA)	NCBI Sequence Viewer
	XP_038950392	(Get FASTA)	NCBI Sequence Viewer
	XP_038950393	(Get FASTA)	NCBI Sequence Viewer
	XP_038950394	(Get FASTA)	NCBI Sequence Viewer
	XP_038950395	(Get FASTA)	NCBI Sequence Viewer
	XP_038950396	(Get FASTA)	NCBI Sequence Viewer
	XP_038950397	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88903	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033034
	ENSRNOP00000033034.2
	ENSRNOP00000068839
	ENSRNOP00000068839.1
	ENSRNOP00000078254
	ENSRNOP00000078254.1
	ENSRNOP00000096403
	ENSRNOP00000096403.1

RefSeq Acc Id:

NP_001100767 ⟸ NM_001107297

- UniProtKB:

D4ABZ7 (UniProtKB/TrEMBL), A6KFU6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLCCCKDWRGHLRAPKGGAAEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGIFG
QRLEDTVHHERKFGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQANLVRDLQDSFDCGEKPLF
DRFLDEVQAHSDVNKMSVQNLATVFGPNILRPQVEDPVTIMEGTSLVQHLMTVLIRKHGQLFAT
PSFEEPASPRGTVQGTVEWGSEEVTRDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPPRLGSQ
AGPAATSPGKRMHTLPGWKSSFRQQGSRSESPKGVSSSLEVPIISSGGNWLINGLSSLRSHRRA
SSGDRLKDTGSAQRLSTYDNVPPSSHLSSTASVASTAWSVASSSREASIGSCTACRASNSSACS
SLHTEWALEPSPLPSSSEGHPSPDLGHSLDEACVGSGSSEPNDPGSPSQAHVRRCRALQGQVAE
LRAELCHQRIEYQRSLKSIEEGNSDLRKQMCRLEEELDQEKKKYAMLEIKLRNSERAREDAERR
NQLLQREMEEFFATLGSLTAGTKGARAPE

hide sequence

RefSeq Acc Id:

XP_006252813 ⟸ XM_006252751

- Peptide Label:

isoform X5

- Sequence:

show sequence

MGLMPAARAFSSCRVCPLPPCRLPACCAPAAPGIFGQRLEDTVHHERKFGPRLAPLLVEQCVDF
IRERGLSEEGLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFA
RYEDFLSCAQLLTKDEGEGTVELAKQVSNLPQANYNLLRYICRFLDEVQAHSDVNKMSVQNLAT
VFGPNILRPQVEDPVTIMEGTSLVQHLMTVLIRKHGQLFATPSFEEPASPRGTVQGTVEWGSEE
VTRDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPPRLGSQAGPAATSPGKRMHTLPGWKSSFR
QQGSRSESPKGVSSSLEVPIISSGGNWLINGLSSLRSHRRASSGDRLKDTGSAQRLSTYDNVPP
SSHLSSTASVASTAWSVASSSREASIGSCTACRASNSSACSSLHTEWALEPSPLPSSSEGHPSP
DLGHSLDEACVGSGSSEPNDPGSPSQAHVRRCRALQGQVAELRAELCHQRIEYQRSLKSIEEGN
SDLRKQMCRLEEELDQEKKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTAGTK
GARAPE

hide sequence

RefSeq Acc Id:	XP_017455573 ⟸ XM_017600084
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JTT7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPAASSKRRTFASRYFTRSKSLVMGEQSRSPGRPLAPHKLGPVLKAGWLRKQKSIMKNWQQRW FVLRGDQLFYYKDKDEGKPQGFISLQGTQVTELLPDPDDPGKHLFEITPGGAAEREKVPANPEA LLLMASSQRDMEDWVQAIRRVIWAPLGGGIFGQRLEDTVHHERKFGPRLAPLLVEQCVDFIRER GLSEEGLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYED FLSCAQLLTKDEGEGTVELAKQVSNLPQANYNLLRYICRFLDEVQAHSDVNKMSVQNLATVFGP NILRPQVEDPVTIMEGTSLVQHLMTVLIRKHGQLFATPSFEEPASPRGTVQGTVEWGSEEVTRD HQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPPRLGSQAGPAATSPGKRMHTLPGWKSSFRQQGS RSESPKGVSSSLEVPIISSGGNWLINGLSSLRSHRRASSGDRLKDTGSAQRLSTYDNVPPSSHL SSTASVASTAWSVASSSREASIGSCTACRASNSSACSSLHTEWALEPSPLPSSSEGHPSPDLGH SLDEACVGSGSSEPNDPGSPSQAHVRRCRALQGQVAELRAELCHQRIEYQRSLKSIEEGNSDLR KQMCRLEEELDQEKKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTAGTKGARA PE hide sequence

RefSeq Acc Id:

ENSRNOP00000033034 ⟸ ENSRNOT00000035915

RefSeq Acc Id:

ENSRNOP00000068839 ⟸ ENSRNOT00000082208

RefSeq Acc Id:	XP_038950394 ⟸ XM_039094466
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6APD0 (UniProtKB/TrEMBL), A0A0G2JTT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950392 ⟸ XM_039094464
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6APD0 (UniProtKB/TrEMBL), A0A0G2JTT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950393 ⟸ XM_039094465
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6APD0 (UniProtKB/TrEMBL), A0A0G2JTT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950396 ⟸ XM_039094468
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZKJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950395 ⟸ XM_039094467
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JTT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950397 ⟸ XM_039094469
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000096403 ⟸ ENSRNOT00000101853

RefSeq Acc Id:

ENSRNOP00000078254 ⟸ ENSRNOT00000104962

Protein Domains

PH Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JTT7-F1-model_v2	AlphaFold	A0A0G2JTT7	1-700	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699959

Promoter ID:

EPDNEW_R10472

Type:

initiation region

Name:

Arhgap22_1

Description:

Rho GTPase activating protein 22

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10473

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	9,486,804 - 9,486,864	EPDNEW

RGD ID:

13699949

Promoter ID:

EPDNEW_R10473

Type:

single initiation site

Name:

Arhgap22_2

Description:

Rho GTPase activating protein 22

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10472

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	9,563,194 - 9,563,254	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307237	AgrOrtholog
BioCyc Gene	G2FUF-12093	BioCyc
Ensembl Genes	ENSRNOG00000024728	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035915	ENTREZGENE
	ENSRNOT00000035915.3	UniProtKB/TrEMBL
	ENSRNOT00000082208	ENTREZGENE
	ENSRNOT00000082208.2	UniProtKB/TrEMBL
	ENSRNOT00000101853	ENTREZGENE
	ENSRNOT00000101853.1	UniProtKB/TrEMBL
	ENSRNOT00000104962	ENTREZGENE
	ENSRNOT00000104962.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
KEGG Report	rno:306279	UniProtKB/TrEMBL
NCBI Gene	306279	ENTREZGENE
PANTHER	RHO GTPASE-ACTIVATING PROTEIN 22	UniProtKB/TrEMBL
	SPERMATHECAL PHYSIOLOGY VARIANT	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
PhenoGen	Arhgap22	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024728	RatGTEx
SMART	RhoGAP	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Rho_GAP	UniProtKB/TrEMBL
UniProt	A0A0G2JTT7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZKJ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APD0	ENTREZGENE, UniProtKB/TrEMBL
	A6KFU6	ENTREZGENE, UniProtKB/TrEMBL
	D4ABZ7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Arhgap22	Rho GTPase activating protein 22	Arhgap22_predicted	Rho GTPase activating protein 22 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Arhgap22_predicted	Rho GTPase activating protein 22 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD