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Gene: Zfp438 (zinc finger protein 438) Rattus norvegicus

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Symbol:

Zfp438

Name:

zinc finger protein 438

RGD ID:

1307214

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF438 (zinc finger protein 438); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC307024; RGD1307214; similar to CG4854-PA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF438 (zinc finger protein 438)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf438 (zinc finger protein 438)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	COX18 (cytochrome c oxidase assembly factor COX18)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Zfp438 (zinc finger protein 438)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp438 (zinc finger protein 438)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF438 (zinc finger protein 438)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF438 (zinc finger protein 438)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf438 (zinc finger protein 438)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf438 (zinc finger protein 438)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf438	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf438	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	57,121,637 - 57,242,892 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	57,121,302 - 57,245,607 (+)	Ensembl				GRCr8
mRatBN7.2	17	52,426,221 - 52,547,472 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	52,426,221 - 52,547,472 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	55,599,069 - 55,720,502 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	59,602,002 - 59,723,451 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	53,758,506 - 53,879,757 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	55,006,893 - 55,131,567 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	55,008,265 - 55,129,555 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	52,693,010 - 52,814,680 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	60,669,933 - 60,791,050 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	48,431,165 - 48,552,212 (+)	NCBI		Celera
RGSC_v3.1	17	60,772,231 - 60,801,364 (+)	NCBI
Cytogenetic Map	17	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

doxorubicin (ISO)

folic acid (ISO)

gentamycin (EXP)

kojic acid (ISO)

L-methionine (ISO)

melphalan (ISO)

methotrexate (ISO)

N-methyl-4-phenylpyridinium (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (ISO,ISS)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (ISO,ISS)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17669267

Genomics

Comparative Map Data

Zfp438
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	57,121,637 - 57,242,892 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	57,121,302 - 57,245,607 (+)	Ensembl				GRCr8
mRatBN7.2	17	52,426,221 - 52,547,472 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	52,426,221 - 52,547,472 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	55,599,069 - 55,720,502 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	59,602,002 - 59,723,451 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	53,758,506 - 53,879,757 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	55,006,893 - 55,131,567 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	55,008,265 - 55,129,555 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	52,693,010 - 52,814,680 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	60,669,933 - 60,791,050 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	48,431,165 - 48,552,212 (+)	NCBI		Celera
RGSC_v3.1	17	60,772,231 - 60,801,364 (+)	NCBI
Cytogenetic Map	17	q12.1	NCBI

ZNF438
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	30,844,632 - 31,032,411 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	30,820,207 - 31,031,937 (-)	Ensembl			hg38	GRCh38
GRCh37	10	31,133,561 - 31,320,794 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	31,173,569 - 31,313,361 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	30,898,885 - 31,086,180 (-)	NCBI		Celera
Cytogenetic Map	10	p11.23	NCBI
HuRef	10	30,852,425 - 31,039,740 (-)	NCBI		HuRef
CHM1_1	10	31,133,547 - 31,320,795 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	30,875,934 - 31,063,684 (-)	NCBI		T2T-CHM13v2.0

Zfp438
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	5,210,027 - 5,334,826 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	5,210,029 - 5,334,807 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	5,210,027 - 5,334,826 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	5,210,029 - 5,334,807 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	5,210,029 - 5,334,437 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	5,210,029 - 5,334,432 (-)	NCBI		MGSCv36	mm8
Celera	18	5,253,703 - 5,378,412 (-)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	3.02	NCBI

Znf438
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	22,568,638 - 22,716,967 (-)	Ensembl
ChiLan1.0	NW_004955429	22,567,214 - 22,762,236 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF438
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	43,496,823 - 43,687,666 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	43,502,151 - 43,690,554 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	30,976,767 - 31,163,679 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	31,329,887 - 31,514,343 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	31,329,887 - 31,339,111 (-)	Ensembl			panPan2	panpan1.1

ZNF438
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	15,711,962 - 15,882,878 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	15,738,665 - 15,882,190 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	12,968,827 - 13,370,365 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	14,010,094 - 14,119,601 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	2	13,449,030 - 13,558,479 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	13,047,678 - 13,449,921 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	13,321,568 - 13,724,068 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf438
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	10,097,114 - 10,271,278 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936613	4,647,689 - 4,746,619 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936613	4,648,059 - 4,816,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF438
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	41,574,566 - 41,578,348 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	41,574,352 - 42,014,391 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	46,148,923 - 46,223,004 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF438
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	30,223,744 - 30,400,175 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	30,221,996 - 30,288,941 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	39,177,178 - 39,355,303 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf438
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	3,414,772 - 3,569,171 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624805	3,415,539 - 3,605,424 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp438
685 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	312
Count of miRNA genes:	216
Interacting mature miRNAs:	252
Transcripts:	ENSRNOT00000033827
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	49496932	65155015	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27233445	65155015	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat

Markers in Region

AI415450

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	17	52,479,642 - 52,479,760	NCBI	Rnor5.0
Rnor_5.0	4	167,174,244 - 167,174,440	NCBI	Rnor5.0
Rnor_5.0	17	52,766,671 - 52,766,867	NCBI	Rnor5.0
RGSC_v3.4	4	99,049,766 - 99,049,961	UniSTS	RGSC3.4
RGSC_v3.4	17	60,743,045 - 60,743,240	UniSTS	RGSC3.4
Celera	17	48,504,208 - 48,504,403	UniSTS
Cytogenetic Map	17	q12.1	UniSTS

RH144670

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	52,546,881 - 52,547,032 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	55,128,965 - 55,129,115	NCBI	Rnor6.0
Rnor_5.0	17	52,814,090 - 52,814,240	UniSTS	Rnor5.0
RGSC_v3.4	17	60,790,460 - 60,790,610	UniSTS	RGSC3.4
Celera	17	48,551,622 - 48,551,772	UniSTS
RH 3.4 Map	17	536.29	UniSTS
Cytogenetic Map	17	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033827 ⟹ ENSRNOP00000033287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	57,121,302 - 57,242,889 (+)	Ensembl
mRatBN7.2 Ensembl	17	52,426,221 - 52,547,472 (+)	Ensembl
Rnor_6.0 Ensembl	17	55,008,265 - 55,129,555 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086342 ⟹ ENSRNOP00000068915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	57,169,594 - 57,242,889 (+)	Ensembl
mRatBN7.2 Ensembl	17	52,426,239 - 52,547,472 (+)	Ensembl
Rnor_6.0 Ensembl	17	55,065,621 - 55,129,234 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107182 ⟹ ENSRNOP00000090723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	57,121,967 - 57,242,889 (+)	Ensembl
mRatBN7.2 Ensembl	17	52,542,662 - 52,547,472 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119611 ⟹ ENSRNOP00000080293

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	57,185,355 - 57,242,889 (+)	Ensembl
mRatBN7.2 Ensembl	17	52,542,529 - 52,547,472 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140483 ⟹ ENSRNOP00000098978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	57,121,844 - 57,245,607 (+)	Ensembl

RefSeq Acc Id:

NM_001107358 ⟹ NP_001100828

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,121,637 - 57,242,887 (+)	NCBI
mRatBN7.2	17	52,426,221 - 52,547,472 (+)	NCBI
Rnor_6.0	17	55,008,265 - 55,129,555 (+)	NCBI
Rnor_5.0	17	52,693,010 - 52,814,680 (+)	NCBI
RGSC_v3.4	17	60,669,933 - 60,791,050 (+)	RGD
Celera	17	48,431,165 - 48,552,212 (+)	RGD

Sequence:

show sequence

CGGGGCCTAGGCTGGAGCGCCGCGCCCGCCGGCTGACCTCGTTGAAGCCGGCCCGTGACGTCAC
CCCGCCGTGACGCGTACGCAGTAGGAAAACTATCAAGATGGATGTCGTGTATCATTCAGTATGG
AAGTTTCAGAAGTTAGAAGACATTTGCTAAATCAAGTTACTTCAAGAAAGCTGCTCTTCAGGTC
ATATACATCATAATGCGGAATTCCTCATCAGTACCACCAAAAGATCAAGGTGAATCAAACATCC
CTTCTGGAACAACACAGAGTGGGAAAACCTCTCAGAGTAAGAGTCAGTTTAGGACCATTGCACC
AAAAATTGTGCCTAAAGTCCTACCATCCAGAGTGCTACCCTGCCCTTCCTCGCTTTCTGACCAA
GGGAGTCTGGCTCTAATGTCCAAACCTCTGGGCATGCACACCCAGAACTATGCTCTGATGCAGG
TGGCCGGCCAGGAGGGGACGTTTTCTCTTGTTGCTTTGCCAAATGTTGCCTCAGCCCAGCCGGT
TCAGAAGCCCAGAATGTCCATACATGAAAACCTTAAACTGCCTATTCCTCGATACCAACCACTG
AGTAGCAAAGGATTAAGAAAGAAACATGACCTGAGCTCTCCCAAGGGTGGCTCCAGGGACCCTC
CTGGCCCAGCCCAGCTATGCCATTTGAGCCCTTCCCCACAAGCCCATCCTGAGCTGCTTCACAA
ACCCAGCCCATGGAAGCGAATGCCCACTTTAAACCCTTCCCCCACCAACATCAACACAGCTACA
GTGACCAGTGCTATTGGCCAAGGAGATTTGAGTCCTCTAGAGACCGACAGCTGTGGAGATCTGG
AGCCTCCTGCCATCCCAGCATATAGTACAGAAAACTCTTCCCCACAGAGCCTCCCAGCAAGTAT
GCAGAAGGCAGGTTGTGCCAGGAAGGAAACGCCCACTAAACCTGCTGTTGCTAGTGAAGAGCTC
CAAGAACAGGTAGCTCCTGCACACTCTGTCGTCAGCAGTACAGTTCAGTCGGTCTCTGTAGTAA
CCAAGGATAAACTGCCTATCCTGCCCTCCTCAAGAGTGAAAACGACAGAGGTGGTCAAAGTGGA
ACCAGATGCTGAGAATGCAGAATCGTCTTCATCTGGATGCAGAGCAAACTGTGAGGAGAGACTG
TCCATCACGGAAGGGTTTGATGCAGCCACTGAGATAGCCAACAAGACACCTGCTCTGCACGGGT
CTAAGCAGAGTGCTTGTAAAAGTGCCTTCTGCCCTGTCACCAAATTAGATCTCAACCGCAAGGC
AAAACCCAGCAGTGGGGTAAAGAGAAGAGGGAGAAAATGGAAAGTGCCAGATGACATTTTAGCA
TTGCAGGGCAAAAGAAGGAGATGCATTATTGGTATGTGTGGAGATAGCATAGAAAGGGCAAGAA
ACAATCCCCCAGAACCCAGAGACCAGAAGCCCAGGGCTACTTCAAGAAAGTATCGTAGCATCAT
GCCCAAGCCTGTCATCGTCCTGTCTGCTTTGGCGCCCCTGGCATCCCCTGCAGCTATGCTGTCC
CAGGCTCCCAGCGGTCTAGGCCAAGATGTTCTGAATAATGCCCTGCCACCAAAATGTCTTAGCT
CCAAGCAGAGTGACAACCTTGCCCCTAAGCCCAGCTCTGCACTCAGAAATGGATTCTCTGGCAT
TAAGAAGCCCTGGCACATGTGTCCTGTCTGCAACTACCACTTCCAATTCAAACACCACCTTCTA
GACCACATGAATACACACACCAACAGACGGCCTTATAGTTGTGGGATCTGTCGCAAGACCTATG
TGCGTCCTGGCAGCCTGAGTGCACATATGAAACTTCACCATGGTGACAATCGCCCCAAGAAACT
GGTGTGCTGTGAATTTTGTGCAAAAGTATTTGGTCATGTCCGAGTCTATTTTGGCCATCTGAAG
GAGGTACACAGGGTTGTGATCAGCACAGAGCCCACCCCCAGTGAACTGCAGTCAGAAGACACAC
CAAAAAACAAGGACAGAGATCCCAGCATGCAAGGACCTGACAGCTCACTGGAGAGGGAAACCAA
GTCAAGTTTGGAAGAAGATTTCCTTCTAAACCAGGCAGATGAAGTCAAATTGCAAATCAGATGT
GGCCGTTGTCAGATCACTGCTCAGTCTTTTGCTGAAATAAAGTTTCATTTGCTTCATGTTCATG
GGGAGGAAATTCAAGGCCGGCTGCAAGAGGTGGGCCAACCAGGCAGCAGAACTGATGCTCCCCA
CCAGAAGCAATACACAGAGAGAACGAAGCAGGTGAAGCCCTGTGCCTCTGCGGAGGACTCCCCA
GCATTCCCTAGAGGAAAAAGACAGACAGTCCCTCATCAGAACAGAGAGGAAGCCCTGGTAGGAA
CTGAAGGTGGCCAGTGGGGAATGACTGGCCCGCAGCATCCTGCCAGGCTTCTCTGGTCCCATGC
TGGCTTCAACTGCCTGCTGTGTGCTCAGATGCTCGGGAGGAAGGAGGACCTGCTTCTTCACTGG
GTACGCCAGCACAACTGTGAGGACCCCACCAGACTCTGGGCTCTCCTGGGTACGTTCTCTAACC
AGGGAGCTCCTGAGCTCCCCAGTGAAGCAAGGCTGTGAGTGAGGCCGTCCAGCCGGAGAGATGC
TGCCCCCATCTCACTGTCTGTGATGTTAGTATTTAATTGTGGGTCCAGCACTTCAGGGCCAGTG
CCGTGCACAGAGTTGGGTGTAGTTTTATTTTCTTAAGAAATAAAATATGTGCCCTGGATGCATT
TTTCTTACCTATGTAGTCTCACTTTAAAATTCTATGCATTCTCTAATATCGTAGACTTTATTTC
ATAATAAATAAAAAGATCAAAGTTAGGAAATTGAAATGTAGAGAAGATTGTTGTTCTCAGTTGC
AAGCTTTTGAGTAGGAGTGTGTGGTGGGGGCGGGGTAGATATATGTTCACGTGTCCTCTTATTT
TGATGCTGTTTAATTATATTTATTAGCAGTTAATTCTACAGCTGTGGGATGTAGTCCCAACTGT
AGTATAAAGTTACAAGATCGTTGTTGATATTTGTTAGTCTCTGGTTTATTTGCATATGCTCTAG
AACAGTCTTTTTAAAATGTACTCTCTACCATAAAATCTGTTTTCA

hide sequence

RefSeq Acc Id:

XM_017600557 ⟹ XP_017456046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,213,531 - 57,242,892 (+)	NCBI
mRatBN7.2	17	52,518,116 - 52,547,118 (+)	NCBI
Rnor_6.0	17	55,099,904 - 55,131,567 (+)	NCBI

Sequence:

show sequence

GAAAGCTGCTCTTCAGGTCATATACATCATAATGCGGAATTCCTCATCAGTACCACCAAAAGAT
CAAGGCGGAAAGGCCCCAAGAGCAGGCCAACTCATTGTATGCAGAACTGAGAGGCCAGCTCAGC
ACTGCCAGTTAGCTGGAGGTAATAGATGTCACTGGGATTATGGATGTGGCTTCACTGGCATAAT
GACTCAGGTGAATCAAACATCCCTTCTGGAACAACACAGAGTGGGAAAACCTCTCAGAGTAAGA
GTCAGTTTAGGACCATTGCACCAAAAATTGTGCCTAAAGTCCTACCATCCAGAGTGCTACCCTG
CCCTTCCTCGCTTTCTGACCAAGGGAGTCTGGCTCTAATGTCCAAACCTCTGGGCATGCACACC
CAGAACTATGCTCTGATGCAGGTGGCCGGCCAGGAGGGGACGTTTTCTCTTGTTGCTTTGCCAA
ATGTTGCCTCAGCCCAGCCGGTTCAGAAGCCCAGAATGTCCATACATGAAAACCTTAAACTGCC
TATTCCTCGATACCAACCACTGAGTAGCAAAGGATTAAGAAAGAAACATGACCTGAGCTCTCCC
AAGGGTGGCTCCAGGGACCCTCCTGGCCCAGCCCAGCTATGCCATTTGAGCCCTTCCCCACAAG
CCCATCCTGAGCTGCTTCACAAACCCAGCCCATGGAAGCGAATGCCCACTTTAAACCCTTCCCC
CACCAACATCAACACAGCTACAGTGACCAGTGCTATTGGCCAAGGAGATTTGAGTCCTCTAGAG
ACCGACAGCTGTGGAGATCTGGAGCCTCCTGCCATCCCAGCATATAGTACAGAAAACTCTTCCC
CACAGAGCCTCCCAGCAAGTATGCAGAAGGCAGGTTGTGCCAGGAAGGAAACGCCCACTAAACC
TGCTGTTGCTAGTGAAGAGCTCCAAGAACAGGTAGCTCCTGCACACTCTGTCGTCAGCAGTACA
GTTCAGTCGGTCTCTGTAGTAACCAAGGATAAACTGCCTATCCTGCCCTCCTCAAGAGTGAAAA
CGACAGAGGTGGTCAAAGTGGAACCAGATGCTGAGAATGCAGAATCGTCTTCATCTGGATGCAG
AGCAAACTGTGAGGAGAGACTGTCCATCACGGAAGGGTTTGATGCAGCCACTGAGATAGCCAAC
AAGACACCTGCTCTGCACGGGTCTAAGCAGAGTGCTTGTAAAAGTGCCTTCTGCCCTGTCACCA
AATTAGATCTCAACCGCAAGGCAAAACCCAGCAGTGGGGTAAAGAGAAGAGGGAGAAAATGGAA
AGTGCCAGATGACATTTTAGCATTGCAGGGCAAAAGAAGGAGATGCATTATTGGTATGTGTGGA
GATAGCATAGAAAGGGCAAGAAACAATCCCCCAGAACCCAGAGACCAGAAGCCCAGGGCTACTT
CAAGAAAGTATCGTAGCATCATGCCCAAGCCTGTCATCGTCCTGTCTGCTTTGGCGCCCCTGGC
ATCCCCTGCAGCTATGCTGTCCCAGGCTCCCAGCGGTCTAGGCCAAGATGTTCTGAATAATGCC
CTGCCACCAAAATGTCTTAGCTCCAAGCAGAGTGACAACCTTGCCCCTAAGCCCAGCTCTGCAC
TCAGAAATGGATTCTCTGGCATTAAGAAGCCCTGGCACATGTGTCCTGTCTGCAACTACCACTT
CCAATTCAAACACCACCTTCTAGACCACATGAATACACACACCAACAGACGGCCTTATAGTTGT
GGGATCTGTCGCAAGACCTATGTGCGTCCTGGCAGCCTGAGTGCACATATGAAACTTCACCATG
GTGACAATCGCCCCAAGAAACTGGTGTGCTGTGAATTTTGTGCAAAAGTATTTGGTCATGTCCG
AGTCTATTTTGGCCATCTGAAGGAGGTACACAGGGTTGTGATCAGCACAGAGCCCACCCCCAGT
GAACTGCAGTCAGAAGACACACCAAAAAACAAGGACAGAGATCCCAGCATGCAAGGACCTGACA
GCTCACTGGAGAGGGAAACCAAGTCAAGTTTGGAAGAAGATTTCCTTCTAAACCAGGCAGATGA
AGTCAAATTGCAAATCAGATGTGGCCGTTGTCAGATCACTGCTCAGTCTTTTGCTGAAATAAAG
TTTCATTTGCTTCATGTTCATGGGGAGGAAATTCAAGGCCGGCTGCAAGAGGTGGGCCAACCAG
GCAGCAGAACTGATGCTCCCCACCAGAAGCAATACACAGAGAGAACGAAGCAGGTGAAGCCCTG
TGCCTCTGCGGAGGACTCCCCAGCATTCCCTAGAGGAAAAAGACAGACAGTCCCTCATCAGAAC
AGAGAGGAAGCCCTGGTAGGAACTGAAGGTGGCCAGTGGGGAATGACTGGCCCGCAGCATCCTG
CCAGGCTTCTCTGGTCCCATGCTGGCTTCAACTGCCTGCTGTGTGCTCAGATGCTCGGGAGGAA
GGAGGACCTGCTTCTTCACTGGGTACGCCAGCACAACTGTGAGGACCCCACCAGACTCTGGGCT
CTCCTGGGTACGTTCTCTAACCAGGGAGCTCCTGAGCTCCCCAGTGAAGCAAGGCTGTGAGTGA
GGCCGTCCAGCCGGAGAGATGCTGCCCCCATCTCACTGTCTGTGATGTTAGTATTTAATTGTGG
GTCCAGCACTTCAGGGCCAGTGCCGTGCACAGAGTTGGGTGTAGTTTTATTTTCTTAAGAAATA
AAATATGTGCCCTGGATGCATTTTTCTTACCTATGTAGTCTCACTTTAAAATTCTATGCATTCT
CTAATATCGTAGACTTTATTTCATAATAAATAAAAAGATCAAAGTTAGGAAATTGAAATGTAGA
GAAGATTGTTGTTCTCAGTTGCAAGCTTTTGAGTAGGAGTGTGTGGTGGGGGCGGGGTAGATAT
ATGTTCACGTGTCCTCTTATTTTGATGCTGTTTAATTATATTTATTAGCAGTTAATTCTACAGC
TGTGGGATGTAGTCCCAACTGTAGTATAAAGTTACAAGATCGTTGTTGATATTTGTTAGTCTCT
GGTTTATTTGCATATGCTCTAGAACAGTCTTTTTAAAATGTACTCTCTACCATAAAATCTGTTT
TCAGGAAACTTTTGTTTTTTTACTTTTTGTTGTTTTCTTAAATGTGCAGTGCTTTGAAGGGTAG
CCGTCAAGTTTTCTAGCATTCCTTCTCAAAATAATAGAAAAACAGATAGTTCAGCTAATAAAAA
GTCTACCTGCTTGGTAGAAAGTTATTTTCAGGAAGTCTTTGTGACTGGAAAATTTACAACTCAG
AGAGCGAACTAGCTGGTGGGCTTCAGAGTTCAGATGCGGTGGTGCCACCTGCTCTCTCTCCCTC
CCGGAGCTTCAGAGGACTGTTAGCTGTTTTAGATACACTGTGTCTTTAAAGCCCAGAGTCTCTT
TGAAAGTCAAGAGTAGTAAAGTAAGACCCTCTTACTGAAAGTCCTAGGGAATTGCCTTGACTCA
CCAAAGTTGACACTGGAAGTGGCTGGCTGTTCTGTCTGTGGAGTCATTTTCTGAGCAGTGGAAT
CTCAGCACCTTAAACCTTCAGATGAGTGCTCCATGCACATGTCCAGTCCTATGCTGTTTGCTAG
GCACAGGCTCGAGAAAGTTCTCAGGAATGGAGAAGGAGTGGGATGGATAAACTACTGGGTCTTG
CATCACCTTTAAACCTCCAGCTGTTCATAGGTGCCTCATGCTGCAGCAGTGTAGGCAAGAGACT
CTCTGTGCTAACAATGTTTGGTTTGCATTCCCACAAGCATTCTGCCATGGTTTATCCATTGATT
GCCCTCAGCTCAGCTTCAGAGAGATCACAGAAGTGTTTGATGCTTTCAGACCCCTCCGTTAGAT
GACACAGTGTGTGTGCCTCAAGCACACAGTGAATTTGCTAGTTTTTAAGAATATTTATTTTAAA
GATTATAGAACTTGTAATCTATCTAGAATATTGTTTGAACTCAAACCCTGAAGTGATTCATAAA
CTATCCAGTTCTGAGGTACAAAGCAGGATTTCAGAAAAGCTAGCCTGGTGGCCAAGGGCAAAAT
GGCCATTCTGCTAGATGCGCACCACACAGGCAGAGCTCAGGTTGCTGGCACTCTGTCCGTACAG
CTCCTACTCAGCCACAAGCCCATGGTGTAGAGATAGGACAGTGTGTGGGGACAGGTGGCAAGCT
GGGGCAAAGGGAACAGAGGTGAAGAGAGGAGAACAGAGAGAAGGTAGGCTTAGCTCCACATTTC
CTTCTGTTTGTGTTTCAGGGCGGCAGCTGAAGCTGTTGACTAAATTTAGAAGCAAATCTTTAGG
CACTGATTCATGGCATAGAGGGACTGGGGTCACCCACAGAGTTTCTCAAAGAAGACTCTGGCCT
GGGGACATAGCTTTACTGGTAGAGTGCAGGCTCCTGGGTTCAAGCCTTTGAAGAGGGAAAACTT
GAAGGAGCCATGTGAAAGGGCTCTTTAACCAGTGCTTTGTCTAGAACAAGGAGAAGAAGCCTCA
CACTGGAGAGAGAGAAACCGAGATGGTTTATTTGGAAGAGATGCCCTTGGATGTTGGCACAATT
CCAGCCTGCCCTCCCCTGTCCATATGGGGTGGAATAGAGTATTTTGCCACTAGTCCCTGTGACC
TGGAAAGAAGTCTTTTTCTGGGCTCTAGCCACTCTGTAGAATAACAGTGGTGATCTCCCTCAAG
GAGTGGCTAGCAAGAGTCCCTGGTCACATGGCACCTGATACGTACAGCATATGAACGTCACGCA
GACATCCCAGATAGCCCTGAGAAACAGGTGGCAGACGAGGAATGCAGAGAGGCAAAGGAGTCCA
GTCTGTCTAGGAAGTGCGTCTGTGGACCCAGGCACTCTTCAGATCTGCCCCTTTCCCCTGTAAC
TGCCCCTCGGCCTTCCTCCACTGAAGCTGCTGTCACATGCACATACCACCCAGATGCTGGTTCA
AGACCAGTGTCCTCTCGAGGACTGGGATGATTCTGTGTCAGCCTGGAGTCCCACCAGAGCTCCT
GCTACACAGGAGGTAGCACACAGATCATTGCTAGGGGGGGAGACGGCTGCATCAGCTAAATGCA
AATTTGTCCCTCTGCTTTTTTTTTTTTTTTT

hide sequence

RefSeq Acc Id:

XM_017600559 ⟹ XP_017456048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,171,710 - 57,242,892 (+)	NCBI
mRatBN7.2	17	52,478,819 - 52,547,118 (+)	NCBI
Rnor_6.0	17	55,065,593 - 55,131,567 (+)	NCBI

Sequence:

show sequence

ATATCTCCCTATTTAATCTAATTAGCAAGGCTAGTCTCTCAATTTGTAAATTTACTGTACAAAC
CAAACATCCTTCAGTAAAAGTTCACTTGATTTTATAACTCAAATGTGTTAATGTATGCTACCAT
GACAACCATCACATGCCTGAATTCTAATTCTAATAGAAATAAATAGAGCACTGAGCTACACCAT
GTGTTGCCTAGATACCATAAGATACTGTTCCTGCAGTCTTTCTTCCTCTGTATTTAGGAAGCTG
TTTCATGTAGATGCTGTTTAACAGAAAGCTGCTCTTCAGGTCATATACATCATAATGCGGAATT
CCTCATCAGTACCACCAAAAGATCAAGGTGAATCAAACATCCCTTCTGGAACAACACAGAGTGG
GAAAACCTCTCAGAGTAAGAGTCAGTTTAGGACCATTGCACCAAAAATTGTGCCTAAAGTCCTA
CCATCCAGAGTGCTACCCTGCCCTTCCTCGCTTTCTGACCAAGGGAGTCTGGCTCTAATGTCCA
AACCTCTGGGCATGCACACCCAGAACTATGCTCTGATGCAGGTGGCCGGCCAGGAGGGGACGTT
TTCTCTTGTTGCTTTGCCAAATGTTGCCTCAGCCCAGCCGGTTCAGAAGCCCAGAATGTCCATA
CATGAAAACCTTAAACTGCCTATTCCTCGATACCAACCACTGAGTAGCAAAGGATTAAGAAAGA
AACATGACCTGAGCTCTCCCAAGGGTGGCTCCAGGGACCCTCCTGGCCCAGCCCAGCTATGCCA
TTTGAGCCCTTCCCCACAAGCCCATCCTGAGCTGCTTCACAAACCCAGCCCATGGAAGCGAATG
CCCACTTTAAACCCTTCCCCCACCAACATCAACACAGCTACAGTGACCAGTGCTATTGGCCAAG
GAGATTTGAGTCCTCTAGAGACCGACAGCTGTGGAGATCTGGAGCCTCCTGCCATCCCAGCATA
TAGTACAGAAAACTCTTCCCCACAGAGCCTCCCAGCAAGTATGCAGAAGGCAGGTTGTGCCAGG
AAGGAAACGCCCACTAAACCTGCTGTTGCTAGTGAAGAGCTCCAAGAACAGGTAGCTCCTGCAC
ACTCTGTCGTCAGCAGTACAGTTCAGTCGGTCTCTGTAGTAACCAAGGATAAACTGCCTATCCT
GCCCTCCTCAAGAGTGAAAACGACAGAGGTGGTCAAAGTGGAACCAGATGCTGAGAATGCAGAA
TCGTCTTCATCTGGATGCAGAGCAAACTGTGAGGAGAGACTGTCCATCACGGAAGGGTTTGATG
CAGCCACTGAGATAGCCAACAAGACACCTGCTCTGCACGGGTCTAAGCAGAGTGCTTGTAAAAG
TGCCTTCTGCCCTGTCACCAAATTAGATCTCAACCGCAAGGCAAAACCCAGCAGTGGGGTAAAG
AGAAGAGGGAGAAAATGGAAAGTGCCAGATGACATTTTAGCATTGCAGGGCAAAAGAAGGAGAT
GCATTATTGGTATGTGTGGAGATAGCATAGAAAGGGCAAGAAACAATCCCCCAGAACCCAGAGA
CCAGAAGCCCAGGGCTACTTCAAGAAAGTATCGTAGCATCATGCCCAAGCCTGTCATCGTCCTG
TCTGCTTTGGCGCCCCTGGCATCCCCTGCAGCTATGCTGTCCCAGGCTCCCAGCGGTCTAGGCC
AAGATGTTCTGAATAATGCCCTGCCACCAAAATGTCTTAGCTCCAAGCAGAGTGACAACCTTGC
CCCTAAGCCCAGCTCTGCACTCAGAAATGGATTCTCTGGCATTAAGAAGCCCTGGCACATGTGT
CCTGTCTGCAACTACCACTTCCAATTCAAACACCACCTTCTAGACCACATGAATACACACACCA
ACAGACGGCCTTATAGTTGTGGGATCTGTCGCAAGACCTATGTGCGTCCTGGCAGCCTGAGTGC
ACATATGAAACTTCACCATGGTGACAATCGCCCCAAGAAACTGGTGTGCTGTGAATTTTGTGCA
AAAGTATTTGGTCATGTCCGAGTCTATTTTGGCCATCTGAAGGAGGTACACAGGGTTGTGATCA
GCACAGAGCCCACCCCCAGTGAACTGCAGTCAGAAGACACACCAAAAAACAAGGACAGAGATCC
CAGCATGCAAGGACCTGACAGCTCACTGGAGAGGGAAACCAAGTCAAGTTTGGAAGAAGATTTC
CTTCTAAACCAGGCAGATGAAGTCAAATTGCAAATCAGATGTGGCCGTTGTCAGATCACTGCTC
AGTCTTTTGCTGAAATAAAGTTTCATTTGCTTCATGTTCATGGGGAGGAAATTCAAGGCCGGCT
GCAAGAGGTGGGCCAACCAGGCAGCAGAACTGATGCTCCCCACCAGAAGCAATACACAGAGAGA
ACGAAGCAGGTGAAGCCCTGTGCCTCTGCGGAGGACTCCCCAGCATTCCCTAGAGGAAAAAGAC
AGACAGTCCCTCATCAGAACAGAGAGGAAGCCCTGGTAGGAACTGAAGGTGGCCAGTGGGGAAT
GACTGGCCCGCAGCATCCTGCCAGGCTTCTCTGGTCCCATGCTGGCTTCAACTGCCTGCTGTGT
GCTCAGATGCTCGGGAGGAAGGAGGACCTGCTTCTTCACTGGGTACGCCAGCACAACTGTGAGG
ACCCCACCAGACTCTGGGCTCTCCTGGGTACGTTCTCTAACCAGGGAGCTCCTGAGCTCCCCAG
TGAAGCAAGGCTGTGAGTGAGGCCGTCCAGCCGGAGAGATGCTGCCCCCATCTCACTGTCTGTG
ATGTTAGTATTTAATTGTGGGTCCAGCACTTCAGGGCCAGTGCCGTGCACAGAGTTGGGTGTAG
TTTTATTTTCTTAAGAAATAAAATATGTGCCCTGGATGCATTTTTCTTACCTATGTAGTCTCAC
TTTAAAATTCTATGCATTCTCTAATATCGTAGACTTTATTTCATAATAAATAAAAAGATCAAAG
TTAGGAAATTGAAATGTAGAGAAGATTGTTGTTCTCAGTTGCAAGCTTTTGAGTAGGAGTGTGT
GGTGGGGGCGGGGTAGATATATGTTCACGTGTCCTCTTATTTTGATGCTGTTTAATTATATTTA
TTAGCAGTTAATTCTACAGCTGTGGGATGTAGTCCCAACTGTAGTATAAAGTTACAAGATCGTT
GTTGATATTTGTTAGTCTCTGGTTTATTTGCATATGCTCTAGAACAGTCTTTTTAAAATGTACT
CTCTACCATAAAATCTGTTTTCAGGAAACTTTTGTTTTTTTACTTTTTGTTGTTTTCTTAAATG
TGCAGTGCTTTGAAGGGTAGCCGTCAAGTTTTCTAGCATTCCTTCTCAAAATAATAGAAAAACA
GATAGTTCAGCTAATAAAAAGTCTACCTGCTTGGTAGAAAGTTATTTTCAGGAAGTCTTTGTGA
CTGGAAAATTTACAACTCAGAGAGCGAACTAGCTGGTGGGCTTCAGAGTTCAGATGCGGTGGTG
CCACCTGCTCTCTCTCCCTCCCGGAGCTTCAGAGGACTGTTAGCTGTTTTAGATACACTGTGTC
TTTAAAGCCCAGAGTCTCTTTGAAAGTCAAGAGTAGTAAAGTAAGACCCTCTTACTGAAAGTCC
TAGGGAATTGCCTTGACTCACCAAAGTTGACACTGGAAGTGGCTGGCTGTTCTGTCTGTGGAGT
CATTTTCTGAGCAGTGGAATCTCAGCACCTTAAACCTTCAGATGAGTGCTCCATGCACATGTCC
AGTCCTATGCTGTTTGCTAGGCACAGGCTCGAGAAAGTTCTCAGGAATGGAGAAGGAGTGGGAT
GGATAAACTACTGGGTCTTGCATCACCTTTAAACCTCCAGCTGTTCATAGGTGCCTCATGCTGC
AGCAGTGTAGGCAAGAGACTCTCTGTGCTAACAATGTTTGGTTTGCATTCCCACAAGCATTCTG
CCATGGTTTATCCATTGATTGCCCTCAGCTCAGCTTCAGAGAGATCACAGAAGTGTTTGATGCT
TTCAGACCCCTCCGTTAGATGACACAGTGTGTGTGCCTCAAGCACACAGTGAATTTGCTAGTTT
TTAAGAATATTTATTTTAAAGATTATAGAACTTGTAATCTATCTAGAATATTGTTTGAACTCAA
ACCCTGAAGTGATTCATAAACTATCCAGTTCTGAGGTACAAAGCAGGATTTCAGAAAAGCTAGC
CTGGTGGCCAAGGGCAAAATGGCCATTCTGCTAGATGCGCACCACACAGGCAGAGCTCAGGTTG
CTGGCACTCTGTCCGTACAGCTCCTACTCAGCCACAAGCCCATGGTGTAGAGATAGGACAGTGT
GTGGGGACAGGTGGCAAGCTGGGGCAAAGGGAACAGAGGTGAAGAGAGGAGAACAGAGAGAAGG
TAGGCTTAGCTCCACATTTCCTTCTGTTTGTGTTTCAGGGCGGCAGCTGAAGCTGTTGACTAAA
TTTAGAAGCAAATCTTTAGGCACTGATTCATGGCATAGAGGGACTGGGGTCACCCACAGAGTTT
CTCAAAGAAGACTCTGGCCTGGGGACATAGCTTTACTGGTAGAGTGCAGGCTCCTGGGTTCAAG
CCTTTGAAGAGGGAAAACTTGAAGGAGCCATGTGAAAGGGCTCTTTAACCAGTGCTTTGTCTAG
AACAAGGAGAAGAAGCCTCACACTGGAGAGAGAGAAACCGAGATGGTTTATTTGGAAGAGATGC
CCTTGGATGTTGGCACAATTCCAGCCTGCCCTCCCCTGTCCATATGGGGTGGAATAGAGTATTT
TGCCACTAGTCCCTGTGACCTGGAAAGAAGTCTTTTTCTGGGCTCTAGCCACTCTGTAGAATAA
CAGTGGTGATCTCCCTCAAGGAGTGGCTAGCAAGAGTCCCTGGTCACATGGCACCTGATACGTA
CAGCATATGAACGTCACGCAGACATCCCAGATAGCCCTGAGAAACAGGTGGCAGACGAGGAATG
CAGAGAGGCAAAGGAGTCCAGTCTGTCTAGGAAGTGCGTCTGTGGACCCAGGCACTCTTCAGAT
CTGCCCCTTTCCCCTGTAACTGCCCCTCGGCCTTCCTCCACTGAAGCTGCTGTCACATGCACAT
ACCACCCAGATGCTGGTTCAAGACCAGTGTCCTCTCGAGGACTGGGATGATTCTGTGTCAGCCT
GGAGTCCCACCAGAGCTCCTGCTACACAGGAGGTAGCACACAGATCATTGCTAGGGGGGGAGAC
GGCTGCATCAGCTAAATGCAAATTTGTCCCTCTGCTTTTTTTTTTTTTTTT

hide sequence

RefSeq Acc Id:

XM_039095727 ⟹ XP_038951655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,169,613 - 57,242,892 (+)	NCBI
mRatBN7.2	17	52,470,964 - 52,547,118 (+)	NCBI

RefSeq Acc Id:

XM_063276461 ⟹ XP_063132531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,169,591 - 57,242,892 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100828	(Get FASTA)	NCBI Sequence Viewer
	XP_017456046	(Get FASTA)	NCBI Sequence Viewer
	XP_017456048	(Get FASTA)	NCBI Sequence Viewer
	XP_038951655	(Get FASTA)	NCBI Sequence Viewer
	XP_063132531	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87443	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033287
	ENSRNOP00000033287.4
	ENSRNOP00000068915
	ENSRNOP00000068915.1
	ENSRNOP00000080293.1
	ENSRNOP00000090723.1

RefSeq Acc Id:

NP_001100828 ⟸ NM_001107358

- UniProtKB:

D4ACS2 (UniProtKB/TrEMBL), A6K9F0 (UniProtKB/TrEMBL), A0A8I5ZQC0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRNSSSVPPKDQGESNIPSGTTQSGKTSQSKSQFRTIAPKIVPKVLPSRVLPCPSSLSDQGSLA
LMSKPLGMHTQNYALMQVAGQEGTFSLVALPNVASAQPVQKPRMSIHENLKLPIPRYQPLSSKG
LRKKHDLSSPKGGSRDPPGPAQLCHLSPSPQAHPELLHKPSPWKRMPTLNPSPTNINTATVTSA
IGQGDLSPLETDSCGDLEPPAIPAYSTENSSPQSLPASMQKAGCARKETPTKPAVASEELQEQV
APAHSVVSSTVQSVSVVTKDKLPILPSSRVKTTEVVKVEPDAENAESSSSGCRANCEERLSITE
GFDAATEIANKTPALHGSKQSACKSAFCPVTKLDLNRKAKPSSGVKRRGRKWKVPDDILALQGK
RRRCIIGMCGDSIERARNNPPEPRDQKPRATSRKYRSIMPKPVIVLSALAPLASPAAMLSQAPS
GLGQDVLNNALPPKCLSSKQSDNLAPKPSSALRNGFSGIKKPWHMCPVCNYHFQFKHHLLDHMN
THTNRRPYSCGICRKTYVRPGSLSAHMKLHHGDNRPKKLVCCEFCAKVFGHVRVYFGHLKEVHR
VVISTEPTPSELQSEDTPKNKDRDPSMQGPDSSLERETKSSLEEDFLLNQADEVKLQIRCGRCQ
ITAQSFAEIKFHLLHVHGEEIQGRLQEVGQPGSRTDAPHQKQYTERTKQVKPCASAEDSPAFPR
GKRQTVPHQNREEALVGTEGGQWGMTGPQHPARLLWSHAGFNCLLCAQMLGRKEDLLLHWVRQH
NCEDPTRLWALLGTFSNQGAPELPSEARL

hide sequence

RefSeq Acc Id:	XP_017456048 ⟸ XM_017600559
- Peptide Label:	isoform X2
- UniProtKB:	D4ACS2 (UniProtKB/TrEMBL), A6K9F0 (UniProtKB/TrEMBL), A0A8I5ZQC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRNSSSVPPKDQGESNIPSGTTQSGKTSQSKSQFRTIAPKIVPKVLPSRVLPCPSSLSDQGSLA LMSKPLGMHTQNYALMQVAGQEGTFSLVALPNVASAQPVQKPRMSIHENLKLPIPRYQPLSSKG LRKKHDLSSPKGGSRDPPGPAQLCHLSPSPQAHPELLHKPSPWKRMPTLNPSPTNINTATVTSA IGQGDLSPLETDSCGDLEPPAIPAYSTENSSPQSLPASMQKAGCARKETPTKPAVASEELQEQV APAHSVVSSTVQSVSVVTKDKLPILPSSRVKTTEVVKVEPDAENAESSSSGCRANCEERLSITE GFDAATEIANKTPALHGSKQSACKSAFCPVTKLDLNRKAKPSSGVKRRGRKWKVPDDILALQGK RRRCIIGMCGDSIERARNNPPEPRDQKPRATSRKYRSIMPKPVIVLSALAPLASPAAMLSQAPS GLGQDVLNNALPPKCLSSKQSDNLAPKPSSALRNGFSGIKKPWHMCPVCNYHFQFKHHLLDHMN THTNRRPYSCGICRKTYVRPGSLSAHMKLHHGDNRPKKLVCCEFCAKVFGHVRVYFGHLKEVHR VVISTEPTPSELQSEDTPKNKDRDPSMQGPDSSLERETKSSLEEDFLLNQADEVKLQIRCGRCQ ITAQSFAEIKFHLLHVHGEEIQGRLQEVGQPGSRTDAPHQKQYTERTKQVKPCASAEDSPAFPR GKRQTVPHQNREEALVGTEGGQWGMTGPQHPARLLWSHAGFNCLLCAQMLGRKEDLLLHWVRQH NCEDPTRLWALLGTFSNQGAPELPSEARL hide sequence

RefSeq Acc Id:	XP_017456046 ⟸ XM_017600557
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JU08 (UniProtKB/TrEMBL), A0A8I6AA68 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLGLWMWLHWHNDSGESNIPSGTTQSGKTSQSKSQFRTIAPKIVPKVLPSRVLPCPSSLSDQG SLALMSKPLGMHTQNYALMQVAGQEGTFSLVALPNVASAQPVQKPRMSIHENLKLPIPRYQPLS SKGLRKKHDLSSPKGGSRDPPGPAQLCHLSPSPQAHPELLHKPSPWKRMPTLNPSPTNINTATV TSAIGQGDLSPLETDSCGDLEPPAIPAYSTENSSPQSLPASMQKAGCARKETPTKPAVASEELQ EQVAPAHSVVSSTVQSVSVVTKDKLPILPSSRVKTTEVVKVEPDAENAESSSSGCRANCEERLS ITEGFDAATEIANKTPALHGSKQSACKSAFCPVTKLDLNRKAKPSSGVKRRGRKWKVPDDILAL QGKRRRCIIGMCGDSIERARNNPPEPRDQKPRATSRKYRSIMPKPVIVLSALAPLASPAAMLSQ APSGLGQDVLNNALPPKCLSSKQSDNLAPKPSSALRNGFSGIKKPWHMCPVCNYHFQFKHHLLD HMNTHTNRRPYSCGICRKTYVRPGSLSAHMKLHHGDNRPKKLVCCEFCAKVFGHVRVYFGHLKE VHRVVISTEPTPSELQSEDTPKNKDRDPSMQGPDSSLERETKSSLEEDFLLNQADEVKLQIRCG RCQITAQSFAEIKFHLLHVHGEEIQGRLQEVGQPGSRTDAPHQKQYTERTKQVKPCASAEDSPA FPRGKRQTVPHQNREEALVGTEGGQWGMTGPQHPARLLWSHAGFNCLLCAQMLGRKEDLLLHWV RQHNCEDPTRLWALLGTFSNQGAPELPSEARL hide sequence

Ensembl Acc Id:

ENSRNOP00000033287 ⟸ ENSRNOT00000033827

Ensembl Acc Id:

ENSRNOP00000068915 ⟸ ENSRNOT00000086342

RefSeq Acc Id:	XP_038951655 ⟸ XM_039095727
- Peptide Label:	isoform X2
- UniProtKB:	D4ACS2 (UniProtKB/TrEMBL), A6K9F0 (UniProtKB/TrEMBL), A0A8I5ZQC0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080293 ⟸ ENSRNOT00000119611

Ensembl Acc Id:

ENSRNOP00000090723 ⟸ ENSRNOT00000107182

RefSeq Acc Id:	XP_063132531 ⟸ XM_063276461
- Peptide Label:	isoform X2
- UniProtKB:	A6K9F0 (UniProtKB/TrEMBL), D4ACS2 (UniProtKB/TrEMBL), A0A8I5ZQC0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098978 ⟸ ENSRNOT00000140483

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JU08-F1-model_v2	AlphaFold	A0A0G2JU08	1-800	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700523

Promoter ID:

EPDNEW_R11045

Type:

single initiation site

Name:

Zfp438_1

Description:

zinc finger protein 438

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	55,008,327 - 55,008,387	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307214	AgrOrtholog
BioCyc Gene	G2FUF-9031	BioCyc
Ensembl Genes	ENSRNOG00000028329	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033827	ENTREZGENE
	ENSRNOT00000033827.6	UniProtKB/TrEMBL
	ENSRNOT00000086342	ENTREZGENE
	ENSRNOT00000086342.2	UniProtKB/TrEMBL
	ENSRNOT00000107182.1	UniProtKB/TrEMBL
	ENSRNOT00000119611.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:307024	UniProtKB/TrEMBL
NCBI Gene	307024	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 438	UniProtKB/TrEMBL
Pfam	zf-C2H2_4	UniProtKB/TrEMBL
PhenoGen	Zfp438	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000028329	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2JU08	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQC0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AA68	ENTREZGENE, UniProtKB/TrEMBL
	A6K9F0	ENTREZGENE, UniProtKB/TrEMBL
	D4ACS2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Zfp438	zinc finger protein 438	RGD1307214_predicted	similar to CG4854-PA (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307214_predicted	similar to CG4854-PA (predicted)	LOC307024_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307024_predicted	similar to CG4854-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD