Bptf (bromodomain PHD finger transcription factor) - Rat Genome Database

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Gene: Bptf (bromodomain PHD finger transcription factor) Rattus norvegicus
Analyze
Symbol: Bptf
Name: bromodomain PHD finger transcription factor
RGD ID: 1307039
Description: Predicted to enable sequence-specific DNA binding activity. Predicted to contribute to ATP-dependent activity, acting on DNA. Involved in cellular response to nerve growth factor stimulus. Located in cell body; dendrite; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with dysmorphic facies and distal limb anomalies. Orthologous to human BPTF (bromodomain PHD finger transcription factor); PARTICIPATES IN histone modification pathway; ISWI family mediated chromatin remodeling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Falz; fetal Alzheimer antigen; LOC303617; nucleosome-remodeling factor subunit BPTF
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81092,480,007 - 92,582,485 (-)NCBIGRCr8
mRatBN7.21091,980,279 - 92,082,731 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1091,982,758 - 92,082,769 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01095,248,573 - 95,350,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,250,294 - 95,349,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01094,988,086 - 95,067,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41096,391,087 - 96,402,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11096,410,231 - 96,583,938 (-)NCBI
Celera1090,646,576 - 90,725,664 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium silicate  (ISO)
carbon nanotube  (ISO)
chloroprene  (EXP)
cisplatin  (EXP,ISO)
clozapine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
inulin  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
sarin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
styrene  (ISO)
tamibarotene  (ISO)
testosterone enanthate  (ISO)
theophylline  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zalcitabine  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Expression of FAC1 in activated microglia during Alzheimer's disease. Bowser R and Reilly S, Neurosci Lett. 1998 Sep 11;253(3):163-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
5. Altered subcellular distribution of transcriptional regulators in response to Abeta peptide and during Alzheimer's disease. Jordan-Sciutto K, etal., Mech Ageing Dev. 2001 Dec;123(1):11-20.
6. FAC1 expression and localization in motor neurons of developing, adult, and amyotrophic lateral sclerosis spinal cord. Mu X, etal., Exp Neurol. 1997 Jul;146(1):17-24.
7. Readout of epigenetic modifications. Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The bromodomain: From epigenome reader to druggable target. Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.
12. Expression of fetal ALZ-50 reactive clone 1 (FAC1) in dentate gyrus following entorhinal cortex lesion. Styren SD, etal., J Comp Neurol. 1997 Oct 6;386(4):555-61.
Additional References at PubMed
PMID:10403843   PMID:10575013   PMID:10727212   PMID:12477932   PMID:14609955   PMID:15632090   PMID:18570454   PMID:18794365   PMID:18974875   PMID:20850016   PMID:27141965  


Genomics

Comparative Map Data
Bptf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81092,480,007 - 92,582,485 (-)NCBIGRCr8
mRatBN7.21091,980,279 - 92,082,731 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1091,982,758 - 92,082,769 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01095,248,573 - 95,350,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,250,294 - 95,349,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01094,988,086 - 95,067,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41096,391,087 - 96,402,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11096,410,231 - 96,583,938 (-)NCBI
Celera1090,646,576 - 90,725,664 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
BPTF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381767,825,503 - 67,984,378 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1767,825,503 - 67,984,378 (+)EnsemblGRCh38hg38GRCh38
GRCh371765,821,619 - 65,980,494 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361763,252,242 - 63,410,956 (+)NCBINCBI36Build 36hg18NCBI36
Build 341763,252,241 - 63,410,954NCBI
Celera1762,393,834 - 62,548,958 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1761,206,522 - 61,365,041 (+)NCBIHuRef
CHM1_11765,885,748 - 66,044,414 (+)NCBICHM1_1
T2T-CHM13v2.01768,700,733 - 68,859,565 (+)NCBIT2T-CHM13v2.0
Bptf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,923,907 - 107,022,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11106,923,907 - 107,022,953 (-)EnsemblGRCm39 Ensembl
GRCm3811107,033,081 - 107,132,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,033,081 - 107,132,127 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711106,894,395 - 106,993,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611106,849,170 - 106,948,012 (-)NCBIMGSCv36mm8
Celera11118,766,552 - 118,865,802 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.11NCBI
Bptf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,990,833 - 7,086,721 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,990,816 - 7,088,751 (+)NCBIChiLan1.0ChiLan1.0
BPTF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21983,850,496 - 84,007,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11788,671,630 - 88,828,429 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01761,759,241 - 61,917,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11766,955,717 - 67,111,521 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1766,956,594 - 67,109,428 (+)Ensemblpanpan1.1panPan2
BPTF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1912,586,107 - 12,703,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl912,590,333 - 12,703,422 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha913,484,380 - 13,638,851 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0914,247,259 - 14,401,817 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl914,248,528 - 14,401,817 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1913,196,405 - 13,355,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0914,183,864 - 14,337,935 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0914,182,366 - 14,336,917 (+)NCBIUU_Cfam_GSD_1.0
Bptf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,797,668 - 13,932,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365415,262,773 - 5,395,519 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365415,261,899 - 5,396,930 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPTF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1214,112,718 - 14,254,790 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11214,112,943 - 14,254,810 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21214,465,944 - 14,560,873 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPTF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11653,478,706 - 53,634,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1653,478,464 - 53,634,183 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607724,424,496 - 24,574,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bptf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624870487,955 - 626,683 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624870489,359 - 626,677 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bptf
469 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:129
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000066487
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108402232193995963Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108730761796121100Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat

Markers in Region
D10Rat203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21092,108,722 - 92,108,854 (+)MAPPERmRatBN7.2
Rnor_6.01095,375,643 - 95,375,773NCBIRnor6.0
Rnor_5.01095,115,017 - 95,115,147UniSTSRnor5.0
Celera1090,776,547 - 90,776,676UniSTS
SHRSP x BN Map1071.09RGD
SHRSP x BN Map1071.09UniSTS
FHH x ACI Map1076.87RGD
Cytogenetic Map10q32.1UniSTS
AW526267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21092,122,202 - 92,122,412 (+)MAPPERmRatBN7.2
Rnor_6.01095,388,624 - 95,388,833NCBIRnor6.0
Rnor_5.01095,128,124 - 95,128,333UniSTSRnor5.0
Celera1090,789,888 - 90,790,097UniSTS
RH 3.4 Map10992.7UniSTS
Cytogenetic Map10q32.1UniSTS
BE099833  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21091,997,528 - 91,997,692 (+)MAPPERmRatBN7.2
Rnor_6.01095,265,064 - 95,265,227NCBIRnor6.0
Rnor_5.01095,005,334 - 95,005,497UniSTSRnor5.0
RGSC_v3.41096,405,872 - 96,406,035UniSTSRGSC3.4
Celera1090,663,067 - 90,663,230UniSTS
RH 3.4 Map10996.3UniSTS
Cytogenetic Map10q32.1UniSTS
RH135081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21092,119,197 - 92,119,394 (+)MAPPERmRatBN7.2
Rnor_6.01095,385,619 - 95,385,815NCBIRnor6.0
Rnor_5.01095,125,119 - 95,125,315UniSTSRnor5.0
Celera1090,786,886 - 90,787,082UniSTS
RH 3.4 Map10994.4UniSTS
Cytogenetic Map10q32.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 31 34 18 19 18 4 4 74 34 41 11 4
Low 12 23 23 23 4 7 1 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC160926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000066487   ⟹   ENSRNOP00000063388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1095,250,294 - 95,262,024 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085210   ⟹   ENSRNOP00000074282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1091,983,462 - 92,082,769 (-)Ensembl
Rnor_6.0 Ensembl1095,251,127 - 95,349,789 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098328   ⟹   ENSRNOP00000094785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1091,982,758 - 92,082,769 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104176   ⟹   ENSRNOP00000094284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1091,983,462 - 92,082,769 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104873   ⟹   ENSRNOP00000088218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1091,986,966 - 92,082,148 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119473   ⟹   ENSRNOP00000082906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1091,982,758 - 92,082,769 (-)Ensembl
RefSeq Acc Id: NM_001127535   ⟹   NP_001121007
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,480,007 - 92,582,413 (-)NCBI
RefSeq Acc Id: XM_039087414   ⟹   XP_038943342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,484 (-)NCBI
mRatBN7.21091,980,279 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087415   ⟹   XP_038943343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,484 (-)NCBI
mRatBN7.21091,982,743 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087416   ⟹   XP_038943344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,484 (-)NCBI
mRatBN7.21091,980,279 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087418   ⟹   XP_038943346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,484 (-)NCBI
mRatBN7.21091,980,279 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087419   ⟹   XP_038943347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,485 (-)NCBI
mRatBN7.21091,982,743 - 92,082,731 (-)NCBI
RefSeq Acc Id: XM_039087420   ⟹   XP_038943348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,484 (-)NCBI
mRatBN7.21091,982,743 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087421   ⟹   XP_038943349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,483 (-)NCBI
mRatBN7.21091,982,743 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087422   ⟹   XP_038943350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,484 (-)NCBI
mRatBN7.21091,980,279 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087423   ⟹   XP_038943351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,483 (-)NCBI
mRatBN7.21091,982,743 - 92,082,730 (-)NCBI
RefSeq Acc Id: XM_039087424   ⟹   XP_038943352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,482 (-)NCBI
mRatBN7.21091,982,743 - 92,082,729 (-)NCBI
RefSeq Acc Id: XM_039087425   ⟹   XP_038943353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,482 (-)NCBI
mRatBN7.21091,980,279 - 92,082,729 (-)NCBI
RefSeq Acc Id: XM_039087426   ⟹   XP_038943354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,482 (-)NCBI
mRatBN7.21091,980,279 - 92,082,474 (-)NCBI
RefSeq Acc Id: XM_039087427   ⟹   XP_038943355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,480 (-)NCBI
mRatBN7.21091,980,279 - 92,082,474 (-)NCBI
RefSeq Acc Id: XM_039087428   ⟹   XP_038943356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,480 (-)NCBI
mRatBN7.21091,980,279 - 92,082,728 (-)NCBI
RefSeq Acc Id: XM_063269216   ⟹   XP_063125286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,482 (-)NCBI
RefSeq Acc Id: XM_063269217   ⟹   XP_063125287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,481 (-)NCBI
RefSeq Acc Id: XM_063269218   ⟹   XP_063125288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,485 (-)NCBI
RefSeq Acc Id: XM_063269219   ⟹   XP_063125289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,480 (-)NCBI
RefSeq Acc Id: XM_063269220   ⟹   XP_063125290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,480 (-)NCBI
RefSeq Acc Id: XM_063269221   ⟹   XP_063125291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81092,481,884 - 92,582,482 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001121007 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943346 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943348 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943349 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943352 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943353 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943354 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943355 (Get FASTA)   NCBI Sequence Viewer  
  XP_038943356 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125286 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125287 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125288 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125289 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125290 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125291 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI60926 (Get FASTA)   NCBI Sequence Viewer  
  EDM06423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074282.2
  ENSRNOP00000082906.1
  ENSRNOP00000088218
  ENSRNOP00000088218.1
  ENSRNOP00000094284
  ENSRNOP00000094284.1
  ENSRNOP00000094785
  ENSRNOP00000094785.1
RefSeq Acc Id: ENSRNOP00000074282   ⟸   ENSRNOT00000085210
RefSeq Acc Id: ENSRNOP00000063388   ⟸   ENSRNOT00000066487
RefSeq Acc Id: XP_038943346   ⟸   XM_039087418
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZVH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943350   ⟸   XM_039087422
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZVH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943342   ⟸   XM_039087414
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943344   ⟸   XM_039087416
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZVH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943353   ⟸   XM_039087425
- Peptide Label: isoform X15
- UniProtKB: A6HK68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943356   ⟸   XM_039087428
- Peptide Label: isoform X19
- UniProtKB: A0A0G2K7N8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943355   ⟸   XM_039087427
- Peptide Label: isoform X20
- UniProtKB: A0A0G2K7N8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943354   ⟸   XM_039087426
- Peptide Label: isoform X18
- UniProtKB: A0A8I6ALT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943347   ⟸   XM_039087419
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZVH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943351   ⟸   XM_039087423
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ALT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943348   ⟸   XM_039087420
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GLB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943349   ⟸   XM_039087421
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ALT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943343   ⟸   XM_039087415
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZVH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943352   ⟸   XM_039087424
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K7N8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088218   ⟸   ENSRNOT00000104873
RefSeq Acc Id: ENSRNOP00000094284   ⟸   ENSRNOT00000104176
RefSeq Acc Id: ENSRNOP00000082906   ⟸   ENSRNOT00000119473
RefSeq Acc Id: ENSRNOP00000094785   ⟸   ENSRNOT00000098328
RefSeq Acc Id: NP_001121007   ⟸   NM_001127535
RefSeq Acc Id: XP_063125288   ⟸   XM_063269218
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063125291   ⟸   XM_063269221
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063125286   ⟸   XM_063269216
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063125287   ⟸   XM_063269217
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063125289   ⟸   XM_063269219
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063125290   ⟸   XM_063269220
- Peptide Label: isoform X16
Protein Domains
Bromo   DDT   PHD-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307039 AgrOrtholog
BioCyc Gene G2FUF-22913 BioCyc
Ensembl Genes ENSRNOG00000047296 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085210.2 UniProtKB/TrEMBL
  ENSRNOT00000098328.1 UniProtKB/TrEMBL
  ENSRNOT00000104176.1 UniProtKB/TrEMBL
  ENSRNOT00000104873.1 UniProtKB/TrEMBL
  ENSRNOT00000119473.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8364269 IMAGE-MGC_LOAD
InterPro BPTF UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DDT_dom UniProtKB/TrEMBL
  WHIM2_dom UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
MGC_CLONE MGC:188681 IMAGE-MGC_LOAD
NCBI Gene 303617 ENTREZGENE
PANTHER NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF UniProtKB/TrEMBL
  PTHR45975 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  WSD UniProtKB/TrEMBL
PhenoGen Bptf PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047296 RatGTEx
SMART BROMO UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A0G2K7N8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GFZ0_RAT UniProtKB/TrEMBL
  A0A8I6GLB4 ENTREZGENE, UniProtKB/TrEMBL
  A6HK68 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-01 Bptf  bromodomain PHD finger transcription factor  Falz  fetal Alzheimer antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Falz  fetal Alzheimer antigen   Falz_predicted  fetal Alzheimer antigen (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Falz_predicted  fetal Alzheimer antigen (predicted)      Symbol and Name status set to approved 70820 APPROVED