Gfus (GDP-L-fucose synthase) - Rat Genome Database

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Gene: Gfus (GDP-L-fucose synthase) Rattus norvegicus
Analyze
Symbol: Gfus
Name: GDP-L-fucose synthase
RGD ID: 1307028
Description: Predicted to enable GDP-L-fucose synthase activity; GDP-mannose 3,5-epimerase activity; and identical protein binding activity. Predicted to be involved in 'de novo' GDP-L-fucose biosynthetic process; positive regulation of endothelial cell migration; and positive regulation of endothelial cell-matrix adhesion via fibronectin. Predicted to act upstream of or within T cell mediated cytotoxicity. Predicted to be active in cytosol. Orthologous to human GFUS (GDP-L-fucose synthase); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; LOC300036; tissue specific transplantation antigen P35B; Tsta3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,492,808 - 109,497,719 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7109,492,809 - 109,497,662 (-)EnsemblGRCr8
mRatBN7.27107,612,087 - 107,617,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,612,094 - 107,616,948 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7109,351,600 - 109,356,446 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,575,278 - 111,580,124 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,521,220 - 111,526,070 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,958,427 - 116,963,281 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,958,392 - 116,963,295 (-)Ensemblrn6Rnor6.0
Rnor_5.07116,851,230 - 116,856,084 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47113,929,477 - 113,934,330 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7103,969,092 - 103,973,946 (-)NCBICelera
RGSC_v3.17113,963,706 - 113,967,872 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2568889   PMID:8910301   PMID:9525924   PMID:12477932   PMID:18205178   PMID:19056867   PMID:23774504  


Genomics

Comparative Map Data
Gfus
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,492,808 - 109,497,719 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7109,492,809 - 109,497,662 (-)EnsemblGRCr8
mRatBN7.27107,612,087 - 107,617,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,612,094 - 107,616,948 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7109,351,600 - 109,356,446 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,575,278 - 111,580,124 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,521,220 - 111,526,070 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,958,427 - 116,963,281 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,958,392 - 116,963,295 (-)Ensemblrn6Rnor6.0
Rnor_5.07116,851,230 - 116,856,084 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47113,929,477 - 113,934,330 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7103,969,092 - 103,973,946 (-)NCBICelera
RGSC_v3.17113,963,706 - 113,967,872 (-)NCBI
Cytogenetic Map7q34NCBI
GFUS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,612,618 - 143,618,048 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,612,617 - 143,618,048 (-)Ensemblhg38GRCh38
GRCh378144,694,788 - 144,700,218 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,765,933 - 144,770,038 (-)NCBIBuild 36Build 36hg18NCBI36
Build 348144,765,932 - 144,770,039NCBI
Celera8141,005,027 - 141,009,971 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,946,059 - 139,951,003 (-)NCBIHuRef
CHM1_18144,735,027 - 144,739,971 (-)NCBICHM1_1
T2T-CHM13v2.08144,762,035 - 144,767,465 (-)NCBIT2T-CHM13v2.0
Gfus
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,796,532 - 75,801,613 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,796,525 - 75,801,681 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381575,924,669 - 75,929,821 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,924,676 - 75,929,832 (-)Ensemblmm10GRCm38
MGSCv371575,755,113 - 75,760,160 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361575,751,938 - 75,756,985 (-)NCBIMGSCv36mm8
Celera1577,425,699 - 77,430,746 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.1NCBI
Gfus
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,313,172 - 2,317,829 (-)Ensembl
ChiLan1.0NW_0049554542,313,172 - 2,317,829 (-)NCBIChiLan1.0ChiLan1.0
GFUS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,096,083 - 161,102,704 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,613,769 - 136,618,784 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,366,003 - 140,371,018 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,381,054 - 143,386,008 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,381,054 - 143,386,008 (-)EnsemblpanPan2panpan1.1
GFUS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,267,119 - 37,272,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,267,122 - 37,271,967 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1337,223,607 - 37,228,596 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01337,738,939 - 37,743,928 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,738,941 - 37,743,902 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,413,207 - 37,418,196 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,530,171 - 37,535,160 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,011,412 - 38,016,402 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gfus
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,095,968 - 1,101,356 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,523,562 - 8,527,546 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,523,240 - 8,527,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GFUS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4949,867 - 959,744 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14950,947 - 955,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GFUS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,833,033 - 137,837,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,833,317 - 137,837,943 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660392,054,768 - 2,060,437 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gfus
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,129,564 - 13,134,009 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473513,129,572 - 13,134,285 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gfus
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11248,244,171 - 248,248,990 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gfus
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:114
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000012306
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH129008  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,612,117 - 107,612,324 (+)MAPPERmRatBN7.2
Rnor_6.07116,958,451 - 116,958,657NCBIRnor6.0
Rnor_5.07116,851,254 - 116,851,460UniSTSRnor5.0
RGSC_v3.47113,929,501 - 113,929,707UniSTSRGSC3.4
Celera7103,969,116 - 103,969,322UniSTS
RH 3.4 Map7785.5UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF289545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA339313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK653514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000012306   ⟹   ENSRNOP00000012306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7109,492,809 - 109,497,662 (-)Ensembl
mRatBN7.2 Ensembl7107,612,095 - 107,616,948 (-)Ensembl
Rnor_6.0 Ensembl7116,958,392 - 116,963,295 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082058   ⟹   ENSRNOP00000071672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7109,492,809 - 109,497,662 (-)Ensembl
mRatBN7.2 Ensembl7107,612,095 - 107,616,948 (-)Ensembl
Rnor_6.0 Ensembl7116,958,428 - 116,963,281 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100492   ⟹   ENSRNOP00000087082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7109,492,809 - 109,496,958 (-)Ensembl
mRatBN7.2 Ensembl7107,612,094 - 107,616,244 (-)Ensembl
RefSeq Acc Id: NM_001127455   ⟹   NP_001120927
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,662 (-)NCBI
mRatBN7.27107,612,094 - 107,616,948 (-)NCBI
Rnor_6.07116,958,427 - 116,963,281 (-)NCBI
Rnor_5.07116,851,230 - 116,856,084 (-)NCBI
RGSC_v3.47113,929,477 - 113,934,330 (-)RGD
Celera7103,969,092 - 103,973,946 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270789   ⟹   NP_001257718
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,662 (-)NCBI
mRatBN7.27107,612,094 - 107,616,948 (-)NCBI
Rnor_6.07116,958,427 - 116,963,281 (-)NCBI
Rnor_5.07116,851,230 - 116,856,084 (-)NCBI
Celera7103,969,092 - 103,973,946 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270790   ⟹   NP_001257719
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,662 (-)NCBI
mRatBN7.27107,612,094 - 107,616,948 (-)NCBI
Rnor_6.07116,958,427 - 116,963,281 (-)NCBI
Rnor_5.07116,851,230 - 116,856,084 (-)NCBI
Celera7103,969,092 - 103,973,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263307   ⟹   XP_063119377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,626 (-)NCBI
RefSeq Acc Id: XM_063263308   ⟹   XP_063119378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,655 (-)NCBI
RefSeq Acc Id: XR_005486584
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,493,450 - 109,497,719 (-)NCBI
mRatBN7.27107,612,087 - 107,617,005 (-)NCBI
RefSeq Acc Id: NP_001120927   ⟸   NM_001127455
- Peptide Label: isoform a
- UniProtKB: A6HS39 (UniProtKB/TrEMBL),   A0A8I6A7C3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257719   ⟸   NM_001270790
- Peptide Label: isoform b
- UniProtKB: B0BNN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257718   ⟸   NM_001270789
- Peptide Label: isoform a
- UniProtKB: A6HS39 (UniProtKB/TrEMBL),   A0A8I6A7C3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071672   ⟸   ENSRNOT00000082058
Ensembl Acc Id: ENSRNOP00000012306   ⟸   ENSRNOT00000012306
Ensembl Acc Id: ENSRNOP00000087082   ⟸   ENSRNOT00000100492
RefSeq Acc Id: XP_063119378   ⟸   XM_063263308
- Peptide Label: isoform X1
- UniProtKB: A6HS39 (UniProtKB/TrEMBL),   A0A8I6A7C3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119377   ⟸   XM_063263307
- Peptide Label: isoform X1
- UniProtKB: A6HS39 (UniProtKB/TrEMBL),   A0A8I6A7C3 (UniProtKB/TrEMBL)
Protein Domains
NAD-dependent epimerase/dehydratase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V762-F1-model_v2 AlphaFold G3V762 1-321 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695397
Promoter ID:EPDNEW_R5920
Type:multiple initiation site
Name:Tsta3_1
Description:tissue specific transplantation antigen P35B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07116,963,271 - 116,963,331EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307028 AgrOrtholog
BioCyc Gene G2FUF-32973 BioCyc
BioCyc Pathway PWY-66 [GDP-L-fucose biosynthesis I (from GDP-D-mannose)] BioCyc
BioCyc Pathway Image PWY-66 BioCyc
Ensembl Genes ENSRNOG00000009020 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012306 ENTREZGENE
  ENSRNOT00000012306.9 UniProtKB/TrEMBL
  ENSRNOT00000082058 ENTREZGENE
  ENSRNOT00000082058.3 UniProtKB/TrEMBL
  ENSRNOT00000100492 ENTREZGENE
  ENSRNOT00000100492.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  UDP-galactose 4-epimerase, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8363456 IMAGE-MGC_LOAD
InterPro Epimerase_deHydtase UniProtKB/TrEMBL
  GDP_fucose_synth UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report rno:300036 UniProtKB/TrEMBL
MGC_CLONE MGC:188615 IMAGE-MGC_LOAD
NCBI Gene 300036 ENTREZGENE
PANTHER GDP-L-FUCOSE SYNTHASE UniProtKB/TrEMBL
  GDP-L-FUCOSE SYNTHASE UniProtKB/TrEMBL
Pfam Epimerase UniProtKB/TrEMBL
PhenoGen Gfus PhenoGen
RatGTEx ENSRNOG00000009020 RatGTEx
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8I6A7C3 ENTREZGENE, UniProtKB/TrEMBL
  A6HS39 ENTREZGENE, UniProtKB/TrEMBL
  B0BNN0 ENTREZGENE, UniProtKB/TrEMBL
  G3V762_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-22 Gfus  GDP-L-fucose synthase  Tsta3  tissue specific transplantation antigen P35B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tsta3  tissue specific transplantation antigen P35B   Tsta3_predicted  tissue specific transplantation antigen P35B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tsta3_predicted  tissue specific transplantation antigen P35B (predicted)      Symbol and Name status set to approved 70820 APPROVED