Odad2 (outer dynein arm docking complex subunit 2) - Rat Genome Database

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Gene: Odad2 (outer dynein arm docking complex subunit 2) Rattus norvegicus
Analyze
Symbol: Odad2
Name: outer dynein arm docking complex subunit 2
RGD ID: 1306933
Description: Predicted to act upstream of or within several processes, including outer dynein arm assembly; regulation of cilium beat frequency; and ventricular system development. Predicted to be located in axoneme and ciliary base. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 23. Orthologous to human ODAD2 (outer dynein arm docking complex subunit 2); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: armadillo repeat containing 4; armadillo repeat-containing protein 4; Armc4; ddx5-ps1; ddx5-ps1 pseudogene; LOC307036; outer dynein arm-docking complex subunit 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Odad2-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81759,910,665 - 60,104,929 (-)NCBIGRCr8
mRatBN7.21755,216,877 - 55,409,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1755,218,991 - 55,409,399 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01760,283,926 - 60,474,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1760,287,203 - 60,474,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01762,066,918 - 62,257,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41763,775,126 - 63,955,410 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11763,786,039 - 63,953,004 (-)NCBI
Celera1756,560,554 - 56,750,067 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (ISO)
ciliary base  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:23849778   PMID:24203976   PMID:25807483  


Genomics

Comparative Map Data
Odad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81759,910,665 - 60,104,929 (-)NCBIGRCr8
mRatBN7.21755,216,877 - 55,409,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1755,218,991 - 55,409,399 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01760,283,926 - 60,474,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1760,287,203 - 60,474,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01762,066,918 - 62,257,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41763,775,126 - 63,955,410 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11763,786,039 - 63,953,004 (-)NCBI
Celera1756,560,554 - 56,750,067 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
ODAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381027,812,168 - 27,999,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1027,775,186 - 27,999,079 (-)EnsemblGRCh38hg38GRCh38
GRCh371028,101,097 - 28,288,008 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361028,141,103 - 28,327,983 (-)NCBINCBI36Build 36hg18NCBI36
Build 341028,141,102 - 28,327,983NCBI
Celera1027,864,582 - 28,051,379 (-)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1027,817,751 - 28,004,707 (-)NCBIHuRef
CHM1_11028,101,042 - 28,287,886 (-)NCBICHM1_1
T2T-CHM13v2.01027,843,337 - 28,030,843 (-)NCBIT2T-CHM13v2.0
Odad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,088,233 - 7,298,272 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,088,209 - 7,297,936 (-)EnsemblGRCm39 Ensembl
GRCm38187,088,233 - 7,298,273 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,088,209 - 7,297,936 (-)EnsemblGRCm38mm10GRCm38
MGSCv37187,088,231 - 7,297,899 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36187,088,231 - 7,297,934 (-)NCBIMGSCv36mm8
Celera187,133,778 - 7,343,791 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.53NCBI
Odad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554621,709,493 - 1,884,900 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554621,709,493 - 1,885,094 (-)NCBIChiLan1.0ChiLan1.0
LOC100973318
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2840,453,768 - 40,668,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11040,450,070 - 40,673,652 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01027,959,535 - 28,133,143 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11028,304,279 - 28,490,897 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1028,320,425 - 28,502,925 (-)Ensemblpanpan1.1panPan2
LOC607539
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124,769,681 - 5,037,592 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24,455,195 - 4,700,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024,601,941 - 4,634,006 (+)NCBIROS_Cfam_1.0
Odad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093447,604,998 - 7,768,961 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366132,155,965 - 2,315,924 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366132,155,624 - 2,316,168 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1039,274,932 - 39,462,846 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11039,276,423 - 39,463,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21053,334,325 - 53,520,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ODAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1927,369,965 - 27,563,798 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl927,369,971 - 27,550,110 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605133,389,770 - 33,594,319 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Odad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248056,193,217 - 6,362,776 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248056,192,843 - 6,365,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Odad2
1259 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:32
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000025585
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)175402992960463637Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat

Markers in Region
D17Mit10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,237,868 - 55,238,103 (-)MAPPERmRatBN7.2
Rnor_6.01760,455,287 - 60,455,521NCBIRnor6.0
Rnor_5.01762,238,146 - 62,238,380UniSTSRnor5.0
RGSC_v3.41763,793,737 - 63,793,972RGDRGSC3.4
RGSC_v3.41763,793,738 - 63,793,972UniSTSRGSC3.4
RGSC_v3.11763,804,566 - 63,804,902RGD
Celera1756,579,418 - 56,579,648UniSTS
Cytogenetic Map17q12.1UniSTS
RH132321  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,219,239 - 55,219,429 (-)MAPPERmRatBN7.2
Rnor_6.01760,473,942 - 60,474,131NCBIRnor6.0
Rnor_5.01762,256,801 - 62,256,990UniSTSRnor5.0
RGSC_v3.41763,775,110 - 63,775,299UniSTSRGSC3.4
Celera1756,560,713 - 56,560,902UniSTS
RH 3.4 Map17561.2UniSTS
Cytogenetic Map17q12.1UniSTS
RH144559  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,360,499 - 55,360,672 (-)MAPPERmRatBN7.2
Rnor_6.01760,332,119 - 60,332,291NCBIRnor6.0
Rnor_5.01762,116,111 - 62,116,283UniSTSRnor5.0
RGSC_v3.41763,909,349 - 63,909,521UniSTSRGSC3.4
Celera1756,701,205 - 56,701,377UniSTS
RH 3.4 Map17557.7UniSTS
Cytogenetic Map17q12.1UniSTS
AU048067  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81760,063,989 - 60,064,286 (+)Marker Load Pipeline
mRatBN7.21755,368,977 - 55,369,274 (-)MAPPERmRatBN7.2
Rnor_6.01760,323,519 - 60,323,815NCBIRnor6.0
Rnor_5.01762,107,511 - 62,107,807UniSTSRnor5.0
RGSC_v3.41763,917,825 - 63,918,121UniSTSRGSC3.4
Celera1756,709,681 - 56,709,977UniSTS
Cytogenetic Map17q12.1UniSTS
Ddx5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21755,245,495 - 55,246,484 (-)MAPPERmRatBN7.2
Rnor_6.01760,446,538 - 60,447,526NCBIRnor6.0
Rnor_5.01762,229,397 - 62,230,385UniSTSRnor5.0
Cytogenetic Map17q12.1UniSTS
Cytogenetic Map10q32.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 10 21 95 35 42 18 8 18 6 98 43 83 22 51 24

Sequence


Ensembl Acc Id: ENSRNOT00000025585   ⟹   ENSRNOP00000025585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1755,218,991 - 55,409,399 (-)Ensembl
Rnor_6.0 Ensembl1760,287,203 - 60,474,031 (+)Ensembl
RefSeq Acc Id: NM_001427763   ⟹   NP_001414692
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,757 - 60,103,547 (-)NCBI
RefSeq Acc Id: XM_039096475   ⟹   XP_038952403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,665 - 60,104,929 (-)NCBI
mRatBN7.21755,216,877 - 55,409,868 (-)NCBI
RefSeq Acc Id: XM_039096476   ⟹   XP_038952404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,665 - 60,104,929 (-)NCBI
mRatBN7.21755,216,877 - 55,409,872 (-)NCBI
RefSeq Acc Id: XM_039096478   ⟹   XP_038952406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,910,665 - 60,088,071 (-)NCBI
mRatBN7.21755,216,877 - 55,393,078 (-)NCBI
RefSeq Acc Id: XM_063276478   ⟹   XP_063132548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,932,901 - 60,104,363 (-)NCBI
RefSeq Acc Id: XM_063276479   ⟹   XP_063132549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81759,956,805 - 60,104,363 (-)NCBI
Ensembl Acc Id: ENSRNOP00000025585   ⟸   ENSRNOT00000025585
RefSeq Acc Id: XP_038952404   ⟸   XM_039096476
- Peptide Label: isoform X3
- UniProtKB: A6KPM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952403   ⟸   XM_039096475
- Peptide Label: isoform X1
- UniProtKB: D3ZXG2 (UniProtKB/TrEMBL),   A6KPM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952406   ⟸   XM_039096478
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001414692   ⟸   NM_001427763
- UniProtKB: A6KPM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132548   ⟸   XM_063276478
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132549   ⟸   XM_063276479
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXG2-F1-model_v2 AlphaFold D3ZXG2 1-1036 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306933 AgrOrtholog
BioCyc Gene G2FUF-8969 BioCyc
Ensembl Genes ENSRNOG00000018905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025585 ENTREZGENE
  ENSRNOT00000025585.7 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
NCBI Gene 307036 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 UniProtKB/TrEMBL
  OUTER DYNEIN ARM-DOCKING COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
  HEAT_2 UniProtKB/TrEMBL
PhenoGen Odad2 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018905 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A6KPM4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXG2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-12 Odad2  outer dynein arm docking complex subunit 2  Armc4  armadillo repeat containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Armc4  armadillo repeat containing 4   Armc4_predicted  armadillo repeat containing 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Armc4_predicted  armadillo repeat containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED