Sumo1 (small ubiquitin-like modifier 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sumo1 (small ubiquitin-like modifier 1) Rattus norvegicus
Analyze
Symbol: Sumo1 (Ensembl: LOC120102380)
Name: small ubiquitin-like modifier 1 (Ensembl:small ubiquitin-related modifier 1-like)
RGD ID: 1306919
Description: Predicted to enable enzyme binding activity; potassium channel regulator activity; and protein tag activity. Involved in cellular response to hypoxia. Located in chromosome; dendrite; and nuclear lumen. Human ortholog(s) of this gene implicated in orofacial cleft 10. Orthologous to several human genes including SUMO1 (small ubiquitin like modifier 1); PARTICIPATES IN sumoylation pathway; RNA transport pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC301442; MGC109561; small ubiquitin-related modifier 1; small ubiquitin-related modifier-1; SMT3 suppressor of mif two 3 homolog 1; SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae); SMT3 suppressor of mif two 3 homolog 1 (yeast); SUMO-1; ubiquitin-like 1 (sentrin)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,572,901 - 68,602,803 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl968,572,911 - 68,602,890 (-)EnsemblGRCr8
mRatBN7.2961,078,790 - 61,108,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,077,435 - 61,108,761 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx969,573,528 - 69,603,470 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,689,507 - 74,719,450 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,007,792 - 73,037,736 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,453,428 - 66,483,614 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)Ensemblrn6Rnor6.0
Rnor_5.0966,258,853 - 66,288,103 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4958,212,538 - 58,242,760 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera958,513,570 - 58,543,459 (-)NCBICelera
RGSC_v3.1958,359,520 - 58,389,742 (-)NCBI
Cytogenetic Map9q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(R)-lipoic acid  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
Antimony trioxide  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP,ISO)
CB-5083  (ISO)
Chorionic gonadotropin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
diallyl disulfide  (EXP)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
Ginkgoic acid  (ISO)
glycitein  (ISO)
glycitin  (ISO)
hinokiflavone  (ISO)
lead nitrate  (ISO)
lipoic acid  (ISO)
maneb  (ISO)
methimazole  (EXP)
mevinphos  (EXP)
mifepristone  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nocodazole  (ISO)
NS-398  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentobarbital  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quinomethionate  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (EXP)
rotenone  (ISO)
SB 203580  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
thapsigargin  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The giant fibrillar center: a nucleolar structure enriched in upstream binding factor (UBF) that appears in transcriptionally more active sensory ganglia neurons. Casafont I, etal., J Struct Biol. 2007 Sep;159(3):451-61. Epub 2007 May 25.
2. Tollip is a mediator of protein sumoylation. Ciarrocchi A, etal., PLoS One. 2009;4(2):e4404. Epub 2009 Feb 9.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Subcellular localization of Daxx determines its opposing functions in ischemic cell death. Jung YS, etal., FEBS Lett. 2007 Mar 6;581(5):843-52. Epub 2007 Feb 2.
5. Agonist-induced PKC phosphorylation regulates GluK2 SUMOylation and kainate receptor endocytosis. Konopacki FA, etal., Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19772-7. doi: 10.1073/pnas.1111575108. Epub 2011 Nov 16.
6. SUMOylation regulates kainate-receptor-mediated synaptic transmission. Martin S, etal., Nature. 2007 May 17;447(7142):321-5. Epub 2007 May 7.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. SUMO modified proteins localize to the XY body of pachytene spermatocytes. Rogers RS, etal., Chromosoma. 2004 Nov;113(5):233-43. Epub 2004 Sep 3.
14. Sumoylation in axons triggers retrograde transport of the RNA-binding protein La. van Niekerk EA, etal., Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12913-8. Epub 2007 Jul 23.
15. SUMOylation of the kainate receptor subunit GluK2 contributes to the activation of the MLK3-JNK3 pathway following kainate stimulation. Zhu QJ, etal., FEBS Lett. 2012 May 7;586(9):1259-64. doi: 10.1016/j.febslet.2012.03.048. Epub 2012 Mar 31.
Additional References at PubMed
PMID:9412458   PMID:9885291   PMID:11514557   PMID:11889051   PMID:12072434   PMID:12477932   PMID:14752048   PMID:15023536   PMID:15489334   PMID:15572661   PMID:15637059   PMID:15660128  
PMID:15767674   PMID:15950612   PMID:15959518   PMID:16144832   PMID:16626738   PMID:16735515   PMID:16791210   PMID:16955485   PMID:16990542   PMID:17000718   PMID:17053029   PMID:17081985  
PMID:17081986   PMID:17696781   PMID:18408734   PMID:18538659   PMID:18571432   PMID:18579533   PMID:18644859   PMID:18681895   PMID:19033381   PMID:19200349   PMID:19223394   PMID:19744555  
PMID:19819240   PMID:20209145   PMID:20725866   PMID:21070824   PMID:21454665   PMID:21518833   PMID:21900893   PMID:21931855   PMID:21965678   PMID:21968017   PMID:22082260   PMID:22406621  
PMID:22658674   PMID:23639777   PMID:24651376   PMID:25220405   PMID:25236484   PMID:25378699   PMID:25634095   PMID:25976847   PMID:26979866   PMID:28553222   PMID:28902364   PMID:31642335  
PMID:35002525  


Genomics

Comparative Map Data
Sumo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,572,901 - 68,602,803 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl968,572,911 - 68,602,890 (-)EnsemblGRCr8
mRatBN7.2961,078,790 - 61,108,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,077,435 - 61,108,761 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx969,573,528 - 69,603,470 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,689,507 - 74,719,450 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,007,792 - 73,037,736 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,453,428 - 66,483,614 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)Ensemblrn6Rnor6.0
Rnor_5.0966,258,853 - 66,288,103 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4958,212,538 - 58,242,760 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera958,513,570 - 58,543,459 (-)NCBICelera
RGSC_v3.1958,359,520 - 58,389,742 (-)NCBI
Cytogenetic Map9q31NCBI
SUMO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,206,171 - 202,238,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2202,206,182 - 202,238,599 (-)Ensemblhg38GRCh38
GRCh372203,070,894 - 203,103,320 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362202,779,148 - 202,811,567 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342202,896,408 - 202,928,828NCBI
Celera2196,822,670 - 196,855,115 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2194,919,783 - 194,951,410 (-)NCBIHuRef
CHM1_12203,077,457 - 203,109,867 (-)NCBICHM1_1
T2T-CHM13v2.02202,687,204 - 202,719,634 (-)NCBIT2T-CHM13v2.0
Sumo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,678,593 - 59,709,993 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,625,717 - 59,709,993 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38159,639,434 - 59,670,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,586,558 - 59,670,834 (-)Ensemblmm10GRCm38
MGSCv37159,696,278 - 59,727,678 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36159,583,983 - 59,615,355 (-)NCBIMGSCv36mm8
Celera160,154,082 - 60,185,562 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.32NCBI
Sumo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545712,538,480 - 12,565,803 (+)Ensembl
ChiLan1.0NW_00495545712,538,974 - 12,565,803 (+)NCBIChiLan1.0ChiLan1.0
SUMO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213104,831,064 - 104,863,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B104,846,063 - 104,878,299 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B89,461,773 - 89,493,879 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B207,613,649 - 207,645,590 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B207,613,654 - 207,645,590 (-)EnsemblpanPan2panpan1.1
SUMO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,199,937 - 11,229,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,200,590 - 11,229,754 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3712,083,987 - 12,113,143 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03711,136,626 - 11,165,785 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,133,840 - 11,166,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,087,432 - 11,116,739 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,065,890 - 11,095,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,059,162 - 11,088,313 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sumo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,432,685 - 159,443,682 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,399,050 - 1,429,205 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367261,402,977 - 1,413,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15105,818,858 - 105,850,233 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115105,820,237 - 105,850,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,249,291 - 117,249,369 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11087,917,324 - 87,957,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040111,440,837 - 111,472,603 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sumo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476514,205,051 - 14,229,864 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476514,205,071 - 14,229,864 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Sumo1
311 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:97
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000022047
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
BE117566  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,095,681 - 61,095,831 (+)MAPPERmRatBN7.2
Rnor_6.0966,470,604 - 66,470,753NCBIRnor6.0
Rnor_5.0966,275,093 - 66,275,242UniSTSRnor5.0
RGSC_v3.4958,229,750 - 58,229,899UniSTSRGSC3.4
Celera958,530,447 - 58,530,596UniSTS
RH 3.4 Map9515.8UniSTS
Cytogenetic Map9q31UniSTS
RH136616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24155,619,936 - 155,620,127 (+)MAPPERmRatBN7.2
Rnor_6.04155,206,093 - 155,206,283NCBIRnor6.0
Rnor_5.04222,231,621 - 222,231,811UniSTSRnor5.0
RGSC_v3.44158,849,978 - 158,850,168UniSTSRGSC3.4
Celera4144,441,045 - 144,441,235UniSTS
Cytogenetic Map9q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022047   ⟹   ENSRNOP00000022048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,572,911 - 68,602,890 (-)Ensembl
mRatBN7.2 Ensembl961,078,797 - 61,108,761 (-)Ensembl
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108699   ⟹   ENSRNOP00000087606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,077,435 - 61,095,467 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109220   ⟹   ENSRNOP00000092576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,572,911 - 68,602,605 (-)Ensembl
mRatBN7.2 Ensembl961,078,818 - 61,108,500 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109290   ⟹   ENSRNOP00000080272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,077,435 - 61,108,725 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170395   ⟹   ENSRNOP00000108361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,572,911 - 68,589,578 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171920   ⟹   ENSRNOP00000106382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,572,911 - 68,602,890 (-)Ensembl
RefSeq Acc Id: NM_001009672   ⟹   NP_001009672
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,572,901 - 68,602,803 (-)NCBI
mRatBN7.2961,078,790 - 61,108,697 (-)NCBI
Rnor_6.0966,453,428 - 66,483,614 (-)NCBI
Rnor_5.0966,258,853 - 66,288,103 (-)NCBI
RGSC_v3.4958,212,538 - 58,242,760 (-)RGD
Celera958,513,570 - 58,543,459 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001009672 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88322 (Get FASTA)   NCBI Sequence Viewer  
  EDL98949 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022048
GenBank Protein Q5I0H3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001009672   ⟸   NM_001009672
- UniProtKB: Q5I0H3 (UniProtKB/Swiss-Prot),   A6IPB1 (UniProtKB/TrEMBL),   A0A8I6A3G5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022048   ⟸   ENSRNOT00000022047
Ensembl Acc Id: ENSRNOP00000092576   ⟸   ENSRNOT00000109220
Ensembl Acc Id: ENSRNOP00000087606   ⟸   ENSRNOT00000108699
Ensembl Acc Id: ENSRNOP00000080272   ⟸   ENSRNOT00000109290
Ensembl Acc Id: ENSRNOP00000108361   ⟸   ENSRNOT00000170395
Ensembl Acc Id: ENSRNOP00000106382   ⟸   ENSRNOT00000171920
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0H3-F1-model_v2 AlphaFold Q5I0H3 1-101 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696702
Promoter ID:EPDNEW_R7227
Type:initiation region
Name:Sumo1_1
Description:small ubiquitin-like modifier 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0966,483,686 - 66,483,746EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306919 AgrOrtholog
BioCyc Gene G2FUF-27405 BioCyc
Ensembl Genes ENSRNOG00000016133 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022047 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7325996 IMAGE-MGC_LOAD
InterPro Rad60/SUMO-like_dom UniProtKB/Swiss-Prot
  SUMO1_Ubl UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:301442 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109561 IMAGE-MGC_LOAD
NCBI Gene 301442 ENTREZGENE
PANTHER SMALL UBIQUITIN-RELATED MODIFIER UniProtKB/Swiss-Prot
Pfam Rad60-SLD UniProtKB/Swiss-Prot
PhenoGen Sumo1 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016133 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
UniProt A0A8I5ZPY9_RAT UniProtKB/TrEMBL
  A0A8I6A3G5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AI63_RAT UniProtKB/TrEMBL
  A0A8L2UJM8_RAT UniProtKB/TrEMBL
  A6IPB1 ENTREZGENE, UniProtKB/TrEMBL
  Q5I0H3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-14 Sumo1  small ubiquitin-like modifier 1  Sumo1  SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Sumo1  SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)  Sumo1  SMT3 suppressor of mif two 3 homolog 1 (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sumo1  SMT3 suppressor of mif two 3 homolog 1 (yeast)  Sumo1_predicted  SMT3 suppressor of mif two 3 homolog 1 (yeast) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sumo1_predicted  SMT3 suppressor of mif two 3 homolog 1 (yeast) (predicted)      Symbol and Name status set to approved 70820 APPROVED