Fsip1 (fibrous sheath interacting protein 1) - Rat Genome Database

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Gene: Fsip1 (fibrous sheath interacting protein 1) Rattus norvegicus
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Symbol: Fsip1
Name: fibrous sheath interacting protein 1
RGD ID: 1306874
Description: Predicted to act upstream of or within several processes, including axoneme assembly; homeostasis of number of cells within a tissue; and vesicle organization. Predicted to be active in acrosomal vesicle; nucleus; and sperm head. Orthologous to human FSIP1 (fibrous sheath interacting protein 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fibrous sheath-interacting protein 1; fibrous sheath-interacting protein 1-like; LOC100909852; LOC296074
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83125,528,538 - 125,671,135 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3125,524,528 - 125,671,135 (-)EnsemblGRCr8
mRatBN7.23105,074,584 - 105,217,180 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,068,543 - 105,217,167 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3108,831,542 - 108,882,667 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,427,062 - 117,478,193 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,087,449 - 115,138,568 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03109,877,943 - 110,021,186 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3109,969,152 - 110,021,149 (-)Ensemblrn6Rnor6.0
Rnor_5.03116,426,960 - 116,567,990 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43104,629,182 - 104,680,197 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3104,084,668 - 104,135,574 (-)NCBICelera
RGSC_v3.13104,525,610 - 104,576,625 (-)NCBI
Cytogenetic Map3q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Fsip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83125,528,538 - 125,671,135 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3125,524,528 - 125,671,135 (-)EnsemblGRCr8
mRatBN7.23105,074,584 - 105,217,180 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,068,543 - 105,217,167 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3108,831,542 - 108,882,667 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,427,062 - 117,478,193 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,087,449 - 115,138,568 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03109,877,943 - 110,021,186 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3109,969,152 - 110,021,149 (-)Ensemblrn6Rnor6.0
Rnor_5.03116,426,960 - 116,567,990 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43104,629,182 - 104,680,197 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3104,084,668 - 104,135,574 (-)NCBICelera
RGSC_v3.13104,525,610 - 104,576,625 (-)NCBI
Cytogenetic Map3q35NCBI
FSIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381539,597,440 - 39,782,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1539,588,357 - 39,782,841 (-)Ensemblhg38GRCh38
GRCh371539,892,232 - 40,075,042 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361537,679,524 - 37,862,331 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341537,679,523 - 37,862,323NCBI
Celera1516,655,072 - 16,838,307 (-)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1516,735,644 - 16,918,847 (-)NCBIHuRef
CHM1_11540,011,614 - 40,194,382 (-)NCBICHM1_1
T2T-CHM13v2.01537,402,151 - 37,588,039 (-)NCBIT2T-CHM13v2.0
Fsip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392117,960,742 - 118,087,468 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2117,960,905 - 118,087,447 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382118,130,261 - 118,256,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,130,424 - 118,256,966 (-)Ensemblmm10GRCm38
MGSCv372118,030,624 - 118,082,702 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362117,896,329 - 117,948,395 (-)NCBIMGSCv36mm8
MGSCv362119,140,167 - 119,192,702 (-)NCBIMGSCv36mm8
Celera2119,346,602 - 119,401,838 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.38NCBI
Fsip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554166,509,477 - 6,717,115 (-)Ensembl
ChiLan1.0NW_0049554166,507,177 - 6,710,526 (-)NCBIChiLan1.0ChiLan1.0
FSIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21628,834,711 - 29,025,637 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11532,991,549 - 33,176,990 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01518,540,424 - 18,722,868 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11536,795,726 - 36,978,917 (-)NCBIPanPan1.1PanPan1.1panPan2
FSIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1306,783,816 - 6,977,987 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl306,790,639 - 6,977,921 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha306,838,409 - 7,032,728 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0306,909,895 - 7,104,636 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl306,916,725 - 7,104,576 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1306,833,833 - 7,028,178 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0306,939,725 - 7,133,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,068,842 - 7,263,456 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fsip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,236,331 - 85,422,220 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,083,572 - 3,270,326 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,084,564 - 3,270,278 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,510,455 - 131,719,254 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11131,510,460 - 131,719,407 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,713,131 - 146,894,901 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FSIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12643,220,918 - 43,605,506 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2643,227,795 - 43,407,241 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604897,534,958 - 97,733,243 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fsip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248046,867,786 - 7,066,062 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248046,866,530 - 7,069,432 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Fsip1
640 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:22
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000007808
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 63 161 91 90 59 88 59 6 338 181 11 140 74 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC082080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007808   ⟹   ENSRNOP00000007808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3125,574,348 - 125,671,135 (-)Ensembl
mRatBN7.2 Ensembl3105,166,128 - 105,217,167 (-)Ensembl
Rnor_6.0 Ensembl3109,969,152 - 110,021,149 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095064   ⟹   ENSRNOP00000087866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3125,658,132 - 125,671,135 (-)Ensembl
mRatBN7.2 Ensembl3105,204,176 - 105,217,167 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102270   ⟹   ENSRNOP00000097924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3125,532,019 - 125,671,135 (-)Ensembl
mRatBN7.2 Ensembl3105,068,543 - 105,217,167 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102326   ⟹   ENSRNOP00000087199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3125,534,044 - 125,671,135 (-)Ensembl
mRatBN7.2 Ensembl3105,181,460 - 105,217,167 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157272   ⟹   ENSRNOP00000110934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3125,527,836 - 125,671,135 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163477   ⟹   ENSRNOP00000108666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3125,524,528 - 125,671,135 (-)Ensembl
RefSeq Acc Id: NM_001013078   ⟹   NP_001013096
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,620,089 - 125,671,135 (-)NCBI
mRatBN7.23105,166,131 - 105,217,179 (-)NCBI
Rnor_6.03109,969,151 - 110,021,149 (-)NCBI
Rnor_5.03116,426,960 - 116,567,990 (-)NCBI
RGSC_v3.43104,629,182 - 104,680,197 (-)RGD
Celera3104,084,668 - 104,135,574 (-)RGD
Sequence:
RefSeq Acc Id: XM_017591571   ⟹   XP_017447060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,538 - 125,671,131 (-)NCBI
mRatBN7.23105,074,584 - 105,217,179 (-)NCBI
Rnor_6.03109,878,468 - 110,021,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104540   ⟹   XP_038960468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,538 - 125,671,131 (-)NCBI
mRatBN7.23105,074,584 - 105,217,180 (-)NCBI
RefSeq Acc Id: XM_039104541   ⟹   XP_038960469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,739 - 125,671,131 (-)NCBI
mRatBN7.23105,074,599 - 105,217,180 (-)NCBI
RefSeq Acc Id: XM_039104542   ⟹   XP_038960470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,538 - 125,671,132 (-)NCBI
mRatBN7.23105,074,584 - 105,217,180 (-)NCBI
RefSeq Acc Id: XM_039104543   ⟹   XP_038960471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,538 - 125,671,063 (-)NCBI
mRatBN7.23105,074,584 - 105,217,153 (-)NCBI
RefSeq Acc Id: XM_039104544   ⟹   XP_038960472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,538 - 125,671,056 (-)NCBI
mRatBN7.23105,074,584 - 105,217,153 (-)NCBI
RefSeq Acc Id: XM_063283317   ⟹   XP_063139387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,528,538 - 125,671,131 (-)NCBI
RefSeq Acc Id: NP_001013096   ⟸   NM_001013078
- UniProtKB: Q66H16 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447060   ⟸   XM_017591571
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GMA0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007808   ⟸   ENSRNOT00000007808
RefSeq Acc Id: XP_038960470   ⟸   XM_039104542
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038960468   ⟸   XM_039104540
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960472   ⟸   XM_039104544
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960471   ⟸   XM_039104543
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960469   ⟸   XM_039104541
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000097924   ⟸   ENSRNOT00000102270
Ensembl Acc Id: ENSRNOP00000087866   ⟸   ENSRNOT00000095064
Ensembl Acc Id: ENSRNOP00000087199   ⟸   ENSRNOT00000102326
RefSeq Acc Id: XP_063139387   ⟸   XM_063283317
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000110934   ⟸   ENSRNOT00000157272
Ensembl Acc Id: ENSRNOP00000108666   ⟸   ENSRNOT00000163477

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H16-F1-model_v2 AlphaFold Q66H16 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692306
Promoter ID:EPDNEW_R2830
Type:initiation region
Name:Fsip1_1
Description:fibrous sheath interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03110,021,148 - 110,021,208EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306874 AgrOrtholog
BioCyc Gene G2FUF-48262 BioCyc
Ensembl Genes ENSRNOG00000005888 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000007808 ENTREZGENE
  ENSRNOT00000102270 ENTREZGENE
  ENSRNOT00000157272 ENTREZGENE
IMAGE_CLONE IMAGE:7133293 IMAGE-MGC_LOAD
InterPro Fsip1 UniProtKB/Swiss-Prot
KEGG Report rno:296074 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95248 IMAGE-MGC_LOAD
NCBI Gene 296074 ENTREZGENE
PANTHER FIBROUS SHEATH-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR22012 UniProtKB/Swiss-Prot
Pfam FSIP1 UniProtKB/Swiss-Prot
PhenoGen Fsip1 PhenoGen
PRINTS FIBSHEATHIP1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005888 RatGTEx
UniProt A0A8I6A5E4_RAT UniProtKB/TrEMBL
  A0A8I6GGG3_RAT UniProtKB/TrEMBL
  A0A8I6GMA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q3H2_RAT UniProtKB/TrEMBL
  A6HPA2_RAT UniProtKB/TrEMBL
  FSIP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Fsip1  fibrous sheath interacting protein 1  LOC100909852  fibrous sheath-interacting protein 1-like  Data merged from RGD:6501136 737654 PROVISIONAL
2012-07-05 LOC100909852  fibrous sheath-interacting protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Fsip1  fibrous sheath interacting protein 1  Fsip1_predicted  fibrous sheath interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Fsip1_predicted  fibrous sheath interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED