Snx24 (sorting nexin 24) - Rat Genome Database

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Gene: Snx24 (sorting nexin 24) Rattus norvegicus
Analyze
Symbol: Snx24
Name: sorting nexin 24
RGD ID: 1306864
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity; phosphatidylinositol-4-phosphate binding activity; and phosphatidylinositol-5-phosphate binding activity. Predicted to be involved in protein transport. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX24 (sorting nexin 24); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361328; MGC94664; SBBI31 protein; sorting nexin-24; sorting nexing 24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81848,869,804 - 49,024,352 (+)NCBIGRCr8
mRatBN7.21846,670,987 - 46,826,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1846,671,443 - 46,826,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1848,726,561 - 48,883,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01849,434,299 - 49,588,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,232,473 - 47,389,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,201,653 - 48,355,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,201,728 - 48,355,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01847,416,683 - 47,569,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41848,712,220 - 48,870,210 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11848,749,842 - 48,907,831 (+)NCBI
Celera1844,855,582 - 45,008,488 (+)NCBICelera
Cytogenetic Map18q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19576982  


Genomics

Comparative Map Data
Snx24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81848,869,804 - 49,024,352 (+)NCBIGRCr8
mRatBN7.21846,670,987 - 46,826,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1846,671,443 - 46,826,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1848,726,561 - 48,883,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01849,434,299 - 49,588,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,232,473 - 47,389,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,201,653 - 48,355,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,201,728 - 48,355,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01847,416,683 - 47,569,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41848,712,220 - 48,870,210 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11848,749,842 - 48,907,831 (+)NCBI
Celera1844,855,582 - 45,008,488 (+)NCBICelera
Cytogenetic Map18q11NCBI
SNX24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385122,845,613 - 123,029,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5122,843,439 - 123,029,354 (+)EnsemblGRCh38hg38GRCh38
GRCh375122,181,308 - 122,344,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365122,209,170 - 122,372,799 (+)NCBINCBI36Build 36hg18NCBI36
Build 345122,209,169 - 122,372,796NCBI
Celera5118,135,984 - 118,299,375 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5117,368,959 - 117,532,913 (+)NCBIHuRef
CHM1_15121,613,873 - 121,777,513 (+)NCBICHM1_1
T2T-CHM13v2.05123,362,482 - 123,545,865 (+)NCBIT2T-CHM13v2.0
Snx24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,376,877 - 53,523,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,378,734 - 53,523,992 (+)EnsemblGRCm39 Ensembl
GRCm381853,243,933 - 53,390,922 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,245,662 - 53,390,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv371853,405,316 - 53,550,491 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361853,371,031 - 53,516,206 (+)NCBIMGSCv36mm8
Celera1854,554,444 - 54,697,562 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1829.0NCBI
Snx24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555211,045,938 - 1,126,037 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555211,006,353 - 1,126,062 (+)NCBIChiLan1.0ChiLan1.0
SNX24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24118,126,329 - 118,299,898 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15116,282,586 - 116,453,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05118,236,231 - 118,420,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15124,017,258 - 124,180,960 (+)NCBIpanpan1.1PanPan1.1panPan2
SNX24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,776,934 - 12,869,304 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,708,712 - 12,888,165 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,490,824 - 11,650,753 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,415,388 - 13,575,423 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11112,155,358 - 12,315,195 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,974,144 - 12,134,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,604,222 - 12,764,198 (+)NCBIUU_Cfam_GSD_1.0
Snx24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213135,158,713 - 135,314,885 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365753,321,101 - 3,396,297 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365753,262,452 - 3,396,132 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2126,349,973 - 126,507,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12126,348,280 - 126,507,867 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22131,508,288 - 131,668,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12325,897,522 - 26,068,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2325,897,637 - 26,071,577 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603452,059,357 - 52,231,147 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477419,015,821 - 19,220,094 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477419,017,777 - 19,220,112 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx24
825 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:122
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000023507
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat

Markers in Region
D18Rat18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21846,718,763 - 46,718,935 (+)MAPPERmRatBN7.2
Rnor_6.01848,248,877 - 48,249,048NCBIRnor6.0
Rnor_5.01847,463,943 - 47,464,114UniSTSRnor5.0
RGSC_v3.41848,759,354 - 48,759,666RGDRGSC3.4
RGSC_v3.41848,759,369 - 48,759,540UniSTSRGSC3.4
RGSC_v3.11848,796,977 - 48,797,289RGD
Celera1844,902,667 - 44,902,838UniSTS
FHH x ACI Map1823.77RGD
FHH x ACI Map1823.77UniSTS
Cytogenetic Map18q11UniSTS
RH131388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21846,825,712 - 46,825,893 (+)MAPPERmRatBN7.2
Rnor_6.01848,355,344 - 48,355,524NCBIRnor6.0
Rnor_5.01847,568,739 - 47,568,919UniSTSRnor5.0
RGSC_v3.41848,869,853 - 48,870,033UniSTSRGSC3.4
Celera1845,008,131 - 45,008,311UniSTS
Cytogenetic Map18q11UniSTS
RH131440  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21846,825,704 - 46,825,889 (+)MAPPERmRatBN7.2
Rnor_6.01848,355,336 - 48,355,520NCBIRnor6.0
Rnor_5.01847,568,731 - 47,568,915UniSTSRnor5.0
RGSC_v3.41848,869,845 - 48,870,029UniSTSRGSC3.4
Celera1845,008,123 - 45,008,307UniSTS
Cytogenetic Map18q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 14 35 35 1 35 72 35 32 11
Low 2 29 22 6 18 6 8 11 2 7 8
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000023507   ⟹   ENSRNOP00000023507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1846,671,624 - 46,826,068 (+)Ensembl
Rnor_6.0 Ensembl1848,201,728 - 48,355,699 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099222   ⟹   ENSRNOP00000079362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1846,713,289 - 46,826,068 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100226   ⟹   ENSRNOP00000094661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1846,671,443 - 46,826,068 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112517   ⟹   ENSRNOP00000096824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1846,671,624 - 46,826,068 (+)Ensembl
RefSeq Acc Id: NM_001008364   ⟹   NP_001008365
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,869,912 - 49,024,352 (+)NCBI
mRatBN7.21846,671,624 - 46,826,070 (+)NCBI
Rnor_6.01848,201,728 - 48,355,701 (+)NCBI
Rnor_5.01847,416,683 - 47,569,096 (+)NCBI
RGSC_v3.41848,712,220 - 48,870,210 (+)RGD
Celera1844,855,582 - 45,008,488 (+)RGD
Sequence:
RefSeq Acc Id: XM_063277476   ⟹   XP_063133546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,869,804 - 49,019,910 (+)NCBI
RefSeq Acc Id: XM_063277477   ⟹   XP_063133547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,870,255 - 49,019,910 (+)NCBI
RefSeq Acc Id: XM_063277478   ⟹   XP_063133548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,870,261 - 49,024,343 (+)NCBI
RefSeq Acc Id: XM_063277479   ⟹   XP_063133549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,870,328 - 49,019,910 (+)NCBI
RefSeq Acc Id: XR_005496057
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81848,869,805 - 49,023,060 (+)NCBI
mRatBN7.21846,671,894 - 46,824,780 (+)NCBI
RefSeq Acc Id: NP_001008365   ⟸   NM_001008364
- UniProtKB: Q5U2S5 (UniProtKB/Swiss-Prot),   A6IX29 (UniProtKB/TrEMBL),   A0A8I6AQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000023507   ⟸   ENSRNOT00000023507
RefSeq Acc Id: ENSRNOP00000096824   ⟸   ENSRNOT00000112517
RefSeq Acc Id: ENSRNOP00000094661   ⟸   ENSRNOT00000100226
RefSeq Acc Id: ENSRNOP00000079362   ⟸   ENSRNOT00000099222
RefSeq Acc Id: XP_063133546   ⟸   XM_063277476
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133547   ⟸   XM_063277477
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133548   ⟸   XM_063277478
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063133549   ⟸   XM_063277479
- Peptide Label: isoform X4
Protein Domains
PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2S5-F1-model_v2 AlphaFold Q5U2S5 1-169 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700784
Promoter ID:EPDNEW_R11308
Type:initiation region
Name:Snx24_1
Description:sorting nexin 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01848,201,963 - 48,202,023EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306864 AgrOrtholog
BioCyc Gene G2FUF-7506 BioCyc
Ensembl Genes ENSRNOG00000017488 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018535 UniProtKB/Swiss-Prot
  ENSRNOG00060012480 UniProtKB/Swiss-Prot
  ENSRNOG00065003487 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023507 ENTREZGENE
  ENSRNOT00000023507.5 UniProtKB/Swiss-Prot
  ENSRNOT00000099222.1 UniProtKB/TrEMBL
  ENSRNOT00000100226.1 UniProtKB/TrEMBL
  ENSRNOT00000112517.1 UniProtKB/TrEMBL
  ENSRNOT00055031523 UniProtKB/Swiss-Prot
  ENSRNOT00060021163 UniProtKB/Swiss-Prot
  ENSRNOT00065004974 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192093 IMAGE-MGC_LOAD
InterPro Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361328 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94664 IMAGE-MGC_LOAD
NCBI Gene 361328 ENTREZGENE
PANTHER SORTING NEXIN-22 AND 24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SORTING NEXIN-24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snx24 PhenoGen
PROSITE PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017488 RatGTEx
  ENSRNOG00055018535 RatGTEx
  ENSRNOG00060012480 RatGTEx
  ENSRNOG00065003487 RatGTEx
SMART SM00312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZMK1_RAT UniProtKB/TrEMBL
  A0A8I6ANL1_RAT UniProtKB/TrEMBL
  A0A8I6AQ57 ENTREZGENE, UniProtKB/TrEMBL
  A6IX29 ENTREZGENE, UniProtKB/TrEMBL
  Q5U2S5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Snx24  sorting nexin 24  Snx24  sorting nexing 24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Snx24  sorting nexing 24  Snx24_predicted  sorting nexing 24 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Snx24_predicted  sorting nexing 24 (predicted)      Symbol and Name status set to approved 70820 APPROVED