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Gene: Chd1 (chromodomain helicase DNA binding protein 1) Rattus norvegicus

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Symbol:

Chd1

Name:

chromodomain helicase DNA binding protein 1

RGD ID:

1306794

Description:

Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and methylated histone binding activity. Predicted to be involved in nucleosome organization and positive regulation by host of viral transcription. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in cytoplasm. Predicted to be active in chromatin and nuclear chromosome. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA binding protein 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

chromodomain-helicase-DNA-binding protein 1; LOC308215

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHD1 (chromodomain helicase DNA binding protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Chd1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chd1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHD1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHD1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chd1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHD1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHD1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chd1 (chromodomain helicase DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CHD1 (chromodomain helicase DNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Chd1 (chromodomain helicase DNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chd1 (chromodomain helicase DNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CHD1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CHD1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Chd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	chd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chd1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	65,334,905 - 65,402,270 (+)	NCBI		GRCr8
GRCr8 Ensembl	1	65,335,218 - 65,401,280 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	1	56,661,743 - 56,729,119 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	56,664,054 - 56,728,125 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	61,508,921 - 61,572,830 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	70,172,494 - 70,236,407 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	63,418,895 - 63,482,804 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	57,692,828 - 57,756,762 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	57,692,836 - 57,755,485 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	58,619,223 - 58,683,477 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	54,594,860 - 54,631,157 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	52,866,469 - 52,930,419 (+)	NCBI		Celera
RGSC_v3.1	1	54,565,816 - 54,634,109 (+)	NCBI
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

castration-resistant prostate carcinoma (ISO)

Colorectal Neoplasms (ISO)

developmental and epileptic encephalopathy 11 (ISO)

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Memory Disorders (ISO)

Muscle Hypotonia (ISO)

neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy (ISO)

Neurodevelopmental Disorders (ISO)

Pilarowski-Bjornsson Syndrome (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

chlordecone (ISO)

chloroprene (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dicyclanil (ISO)

diethylstilbestrol (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

fenthion (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

GSK-J4 (ISO)

indometacin (ISO)

irinotecan (ISO)

lead(0) (ISO)

methidathion (ISO)

miconazole (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pinosylvin (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trans-pinosylvin (ISO)

trichloroethene (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

chromatin organization (IEA)

chromatin remodeling (ISO)

nucleosome organization (IBA)

positive regulation by host of viral transcription (ISO)

Cellular Component

chromatin (IBA)

cytoplasm (ISO)

nuclear chromosome (ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IBA)

ATP-dependent chromatin remodeler activity (IBA)

chromatin binding (IBA)

DNA binding (IBA,IEA)

helicase activity (IEA)

histone binding (IBA)

histone H3K4me3 reader activity (ISO)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	The mutational landscape of lethal castration-resistant prostate cancer.	Grasso CS, etal., Nature. 2012 Jul 12;487(7406):239-43. doi: 10.1038/nature11125.
4.	Recurrent deletion of CHD1 in prostate cancer with relevance to cell invasiveness.	Huang S, etal., Oncogene. 2012 Sep 13;31(37):4164-70. doi: 10.1038/onc.2011.590. Epub 2011 Dec 19.
5.	Readout of epigenetic modifications.	Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:16415155	PMID:16751776	PMID:21029866	PMID:22046413	PMID:25297984	PMID:28866611

Genomics

Comparative Map Data

Chd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	65,334,905 - 65,402,270 (+)	NCBI		GRCr8
GRCr8 Ensembl	1	65,335,218 - 65,401,280 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	1	56,661,743 - 56,729,119 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	56,664,054 - 56,728,125 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	61,508,921 - 61,572,830 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	70,172,494 - 70,236,407 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	63,418,895 - 63,482,804 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	57,692,828 - 57,756,762 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	57,692,836 - 57,755,485 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	58,619,223 - 58,683,477 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	54,594,860 - 54,631,157 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	52,866,469 - 52,930,419 (+)	NCBI		Celera
RGSC_v3.1	1	54,565,816 - 54,634,109 (+)	NCBI
Cytogenetic Map	1	q12	NCBI

CHD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	98,853,985 - 98,929,007 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	98,853,985 - 98,929,007 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	98,189,689 - 98,264,711 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	98,218,808 - 98,290,138 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	98,219,348 - 98,290,140	NCBI
Celera	5	94,075,038 - 94,146,342 (-)	NCBI		Celera
Cytogenetic Map	5	q15-q21.1	NCBI
HuRef	5	93,378,590 - 93,449,621 (-)	NCBI		HuRef
CHM1_1	5	97,623,527 - 97,694,866 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	99,357,270 - 99,432,327 (-)	NCBI		T2T-CHM13v2.0

Chd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	15,925,229 - 15,992,874 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	15,925,229 - 15,992,872 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	15,704,967 - 15,772,612 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	15,704,967 - 15,772,610 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	15,841,931 - 15,909,576 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	15,409,980 - 15,475,054 (+)	NCBI		MGSCv36	mm8
Celera	17	16,497,340 - 16,562,836 (+)	NCBI		Celera
Cytogenetic Map	17	A2	NCBI
cM Map	17	8.95	NCBI

Chd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	14,200,617 - 14,268,361 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	14,200,618 - 14,268,361 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	94,105,319 - 94,179,266 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	92,256,234 - 92,332,806 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	94,165,414 - 94,238,836 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	99,719,858 - 99,790,411 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	99,721,032 - 99,790,263 (-)	Ensembl	panpan1.1		panPan2

CHD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	11,288,873 - 11,359,972 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	11,288,244 - 11,359,208 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	12,628,640 - 12,702,491 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	11,176,524 - 11,250,420 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	11,176,403 - 11,249,017 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	11,126,127 - 11,200,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	11,133,031 - 11,206,864 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	11,334,612 - 11,408,529 (+)	NCBI		UU_Cfam_GSD_1.0

Chd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	166,760,555 - 166,832,642 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	4,945,650 - 5,018,145 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	4,945,650 - 5,016,209 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	105,113,668 - 105,203,119 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	105,113,149 - 105,205,303 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	108,968,149 - 109,066,119 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	2,433,694 - 2,507,334 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	2,432,461 - 2,507,704 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	11,977,236 - 12,048,790 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624743	17,311,167 - 17,380,458 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Chd1
1806 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	18
Count of miRNA genes:	14
Interacting mature miRNAs:	18
Transcripts:	ENSRNOT00000019358
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	29409279	74409279	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	34565726	79565726	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat

Markers in Region

RH139427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,727,767 - 56,727,911 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,756,405 - 57,756,548	NCBI	Rnor6.0
Rnor_5.0	1	58,683,120 - 58,683,263	UniSTS	Rnor5.0
Celera	1	52,930,062 - 52,930,205	UniSTS
RH 3.4 Map	1	675.4	UniSTS
Cytogenetic Map	1	q12	UniSTS

RH131099

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,661,172 - 56,661,364 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,689,978 - 57,690,169	NCBI	Rnor6.0
Rnor_5.0	1	58,617,454 - 58,617,645	UniSTS	Rnor5.0
RGSC_v3.4	1	54,592,044 - 54,592,235	UniSTS	RGSC3.4
RH 3.4 Map	1	671.8	UniSTS
Cytogenetic Map	1	q12	UniSTS

RH141493

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,708,162 - 56,708,370 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,736,744 - 57,736,951	NCBI	Rnor6.0
Rnor_5.0	1	58,663,139 - 58,663,346	UniSTS	Rnor5.0
Celera	1	52,910,477 - 52,910,684	UniSTS
RH 3.4 Map	1	673.4	UniSTS
Cytogenetic Map	1	q12	UniSTS

BI276460

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,727,632 - 56,727,806 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,756,270 - 57,756,443	NCBI	Rnor6.0
Rnor_5.0	1	58,682,985 - 58,683,158	UniSTS	Rnor5.0
Celera	1	52,929,927 - 52,930,100	UniSTS
RH 3.4 Map	1	677.4	UniSTS
Cytogenetic Map	1	q12	UniSTS

AW535587

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,703,154 - 56,703,304 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,731,755 - 57,731,904	NCBI	Rnor6.0
Rnor_5.0	1	58,658,150 - 58,658,299	UniSTS	Rnor5.0
Celera	1	52,905,469 - 52,905,618	UniSTS
RH 3.4 Map	1	679.7	UniSTS
Cytogenetic Map	1	q12	UniSTS

AU049637

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,724,395 - 56,724,539 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,753,033 - 57,753,176	NCBI	Rnor6.0
Rnor_5.0	1	58,679,748 - 58,679,891	UniSTS	Rnor5.0
Celera	1	52,926,690 - 52,926,833	UniSTS
Cytogenetic Map	1	q12	UniSTS

MARC_15733-15734:1013528717:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,697,909 - 56,698,831 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,726,510 - 57,727,431	NCBI	Rnor6.0
Rnor_5.0	1	58,652,905 - 58,653,826	UniSTS	Rnor5.0
RGSC_v3.4	1	54,628,714 - 54,629,635	UniSTS	RGSC3.4
Celera	1	52,900,218 - 52,901,139	UniSTS
Cytogenetic Map	1	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	11	49	113	91	90	59	25	59	6	218	97	11	93	45	60	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ612304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019358 ⟹ ENSRNOP00000019358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	65,354,264 - 65,401,280 (+)	Ensembl
mRatBN7.2 Ensembl	1	56,664,054 - 56,728,125 (+)	Ensembl
Rnor_6.0 Ensembl	1	57,692,983 - 57,755,485 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083968 ⟹ ENSRNOP00000073550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	65,345,649 - 65,401,280 (+)	Ensembl
mRatBN7.2 Ensembl	1	56,680,365 - 56,728,125 (+)	Ensembl
Rnor_6.0 Ensembl	1	57,692,836 - 57,745,041 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000133383 ⟹ ENSRNOP00000104287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	65,335,218 - 65,401,172 (+)	Ensembl

RefSeq Acc Id:

NM_001107465 ⟹ NP_001100935

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,337,216 - 65,401,280 (+)	NCBI
mRatBN7.2	1	56,664,054 - 56,728,125 (+)	NCBI
Rnor_6.0	1	57,692,828 - 57,756,762 (+)	NCBI
Rnor_5.0	1	58,619,223 - 58,683,477 (+)	NCBI
RGSC_v3.4	1	54,594,860 - 54,631,157 (+)	RGD
Celera	1	52,866,469 - 52,930,419 (+)	RGD

Sequence:

show sequence

CCCCCAGGTGACATAGAGAGGGGGCCCTGGAAACCCGTGGATGTTGAAGAAAATTCATCTTTGA
ACTTTTGATATTCGAGGAAATCGGCATTCATACTCGTCTTTTATTATTCTGAGGAGATTTGTGT
TTTATTTAAAACTTGTTGATCTTTACAATGAATGGACACAGTGATGAAGAAAGTGTTAGAAATG
GCAGCGGAGAATCAAGTCAGTCAGAAGATGATTCTGGGTCAGCATCAGGCTCTGGATCTGGCTC
AAGCTCTGGCAGCAGCAGTGATGGGAGCAGCAGCCAGTCTGGGAGCAGCGACTCTGATTCTGGT
TCTGACTCCGGAAGTCAATCAGAGTCTGAGTCAGACACATCCCGAGAGAACAAAGTTCAAGCAA
AACCACCAAAAGTTGATGGAGCTGAGTTTTGGAAATCTAACCCCAGTATTCTGGCTGTTCAGAG
ATCTGCAATGCTTAGGAAGCAGACACAGCAGCCTCAGCAGCAGCGCCCAGCTTCATCTAATAGT
GGATCCGAAGAGGATTCCTCTAGCAGTGAAGACTCAGACGCCTCGTCCAGCGATGTCAAGAGGA
AAAAGCATAACGATGAAGATTGGCAAATGTCTGGGTCTGGATCTCCATCTCAGTCTGGTTCAGA
CTCAGAATCTGAAGACGAGAGAGATAAAAGTAGCTGTGATGGGACAGAGTCTGATTATGAGCCA
AAAAACAAAGTCAAAAGCAGAAAACCTCAGAATAGATCTAAGTCAAAAAGTGGGAAAAAAATTC
TTGGACAGAAAAAGAGGCAGATTGATTCGTCTGAGGATGAAGATGATGAGGACTACGATAATGA
TAAACGAAGCTCTCGACGCCAGGCCACCGTCAATGTGAGCTACAAGGAGGATGAAGAGATGAAA
ACTGACTCTGATGACCTGCTGGAGGTCTGCGGAGAGGACGTCCCTCAGACGGAGGATGAGGAGT
TTGAGACCATAGAAAGGTTTATGGATTGCAGAGTTGGGCGGAAAGGAGCTACTGGTGCTACTAC
AACCATTTATGCTATTGAAGCAGATGGTGACCCAAATGCAGGATTCGAAAAAAGCAAAGAGCCG
GGAGACGTCCAGTATTTAATTAAGTGGAAAGGGTGGTCGCACATCCATAACACGTGGGAGACGG
AAGAAACCCTCAAGCAGCAGAACGTTAGAGGGATGAAAAAGTTGGATAATTATAAGAAAAAAGA
TCAGGAGACAAAACGATGGCTGAAAAATGCTTCTCCGGAAGATGTGGAATATTACAACTGCCAG
CAAGAGCTTACCGATGACCTCCACAAACAGTACCAGATAGTGGAGCGCATAATTGCTCATTCCA
ATCAGAAGTCAGCAGCTGGTCTTCCTGATTACTATTGCAAATGGCAGGGGCTTCCCTACTCTGA
GTGCAGCTGGGAGGACGGAGCGCTCATTTCCAAAAAGTTCCAGACGTGTATCGATGAGTATTTT
AGCAGGAATCAGTCAAAAACTACACCTTTTAAAGATTGCAAAGTACTGAAACAAAGACCAAGAT
TTGTAGCTCTGAAGAAACAACCATCCTATATTGGAGGACATGAGGGTTTAGAATTGAGAGACTA
TCAGCTGAATGGTTTAAACTGGCTTGCTCACTCTTGGTGCAAAGGAAATAGTTGCATACTTGCT
GATGAAATGGGCCTTGGAAAAACGATACAGACCATCTCATTTTTGAACTATTTGTTTCATGAAC
ATCAGTTATACGGACCTTTTCTACTAGTTGTCCCGCTCTCCACTCTGACTTCCTGGCAAAGGGA
AATTCAGACGTGGGCGTCTCAGATGAATGCTGTGGTTTATTTAGGTGACATTAACAGCAGAAAC
ATGATAAGAACGCACGAATGGATGCATCCCCAGACCAAACGGTTAAAGTTTAACATACTTTTAA
CAACGTATGAAATTTTATTGAAGGATAAGGCATTCCTTGGTGGTCTGAATTGGGCATTTATAGG
TGTTGATGAAGCACATCGATTAAAAAATGATGATTCCCTTCTATATAAAACTTTAATTGATTTC
AAATCTAATCACCGCCTCTTAATCACTGGAACTCCTCTGCAGAACTCCCTGAAAGAGCTCTGGT
CATTGCTGCATTTCATTATGCCAGAAAAGTTTTCTTCATGGGAAGATTTTGAGGAAGAACATGG
TAAAGGCAGAGAATATGGTTATGCAAGCCTCCACAAGGAGCTTGAGCCATTTCTGTTACGCAGA
GTTAAGAAAGATGTGGAAAAATCTCTTCCTGCCAAGGTGGAGCAGATTTTAAGAATGGAAATGA
GTGCTTTACAGAAACAATATTACAAGTGGATTTTAACTAGGAATTACAAAGCCCTCAGCAAAGG
TTCCAAGGGCAGTACCTCAGGCTTTTTGAACATTATGATGGAGCTAAAGAAATGTTGTAACCAT
TGCTACCTCATTAAACCACCAGATAATAACGAATTCTATAATAAACAGGAGGCCTTACAACACT
TAATCCGTAGTAGTGGAAAATTAATTCTTCTAGACAAGCTGTTGATTCGTCTAAGAGAAAGAGG
CAATCGAGTCCTCATTTTTTCTCAGATGGTGCGGATGTTAGATATACTTGCAGAATATTTGAAG
TATCGCCAATTCCCCTTTCAAAGATTAGATGGATCAATAAAAGGGGAGCTGAGGAGACAAGCTC
TAGACCACTTTAATGCGGAGGGGTCAGAGGATTTCTGCTTTTTGCTCTCTACCCGAGCTGGGGG
TTTAGGCATTAACTTAGCCTCTGCTGACACTGTTGTTATATTCGATTCGGATTGGAATCCACAA
AATGATCTTCAGGCTCAAGCTAGAGCTCATCGAATTGGGCAGAAGAAACAGGTGAATATATATC
GCTTGGTTACAAAGGGATCCGTTGAAGAAGATATTCTTGAAAGGGCCAAAAAGAAAATGGTCTT
GGATCATCTTGTGATTCAACGAATGGATACCACTGGGAAGACAGTGTTGCACACAGGCTCCGCT
CCATCAAGTTCTACCCCCTTCAATAAAGAGGAATTATCAGCCATTTTAAAGTTTGGTGCTGAGG
AGCTTTTTAAGGAGCCTGAAGGAGAAGAGCAGGAGCCCCAGGAGATGGATATAGATGAAATCTT
GAAGAGAGCTGAGACTCACGAAAATGAGCCAGGCCCGCTGACTGTCGGGGATGAGCTGCTCTCC
CAGTTTAAGGTTGCCAATTTTTCAAATATGGATGAAGATGACATTGAATTGGAACCTGAAAGAA
ATTCAAAGAACTGGGAGGACATCATTCCAGAAGAGCAAAGACGACGGTTAGAAGAGGAGGAGAG
ACAAAAGGAGCTGGAAGAAATTTATATGCTCCCGAGAATGAGAAACTGTGCAAAGCAGATAAGT
TTCAATGGAAGTGAAGGGCGGCGGAGTAGAAGCAGAAGATACTCGGGATCTGATAGTGATTCAA
TCTCGGAAAGGAAGCGGCCGAAGAAACGTGGGCGACCACGCACCATCCCTCGGGAGAACATTAA
AGGCTTTAGTGATGCGGAGATTAGGCGGTTTATCAAGAGCTATAAGAAATTTGGTGGCCCTCTG
GAGAGGTTAGATGCAATTGCTCGAGATGCTGAATTGGTTGATAAATCGGAAACAGACCTCAGAA
GACTAGGAGAACTGGTGCATAATGGTTGTGTTAAAGCTTTAAAAGATAGTTCTTCGGGAACAGA
GCGAGCAGGTGGCAGACTTGGAAAGGTGAAGGGGCCAACGTTCCGAATATCCGGAGTACAGGTG
AATGCGAAGCTGGTCATTGCTCACGAGGACGAGCTGATACCTTTGCATAAGTCCATTCCCTCAG
ACCCGGAGGAGAGGAAGCAGTATACAATCCCATGCCATACAAAGGCTGCTCACTTCGATATAGA
CTGGGGCAAAGAGGATGACTCGAATTTATTAATTGGTATCTATGAATATGGCTATGGAAGCTGG
GAAATGATTAAAATGGATCCAGACCTCAGCTTAACACACAAGATTCTTCCAGATGATCCTGATA
AAAAACCACAAGCAAAACAGTTACAGACTCGAGCAGACTACCTCATCAAACTACTTAGCAGAGA
TCTTGCAAAAAAAGAGGCTCAGAGGCTTTCTGGTGCGGGAGGCTCAAAGAGGAGAAAAACAAGA
GCTAAAAAGAATAAAGCAATGAAGTCCATCAAAGTCAAAGAGGAAATAAAGAGTGACTCATCGC
CCCTGCCTTCAGAGAGGTCTGAGGAGGAGGACGATAACGTGAATGACTCCAAGCCTGAAAGTAA
AGACCGCTCCAAAAAGTCTGTGGTGTCTGATGCTCCCGTCCACATCACTGCAAGTGGAGAGCCA
GTCCCCATAGCTGAAGAGTCTGAAGAGCTGGATCAGAAGACATTCAGTATTTGTAAAGAAAGAA
TGAGACCGGTGAAGGCAGCTTTGAAACAACTTGACAGGCCTGAGAAGGGCCTTTCGGAAAGAGA
GCAGCTGGAACACACTAGACAGTGTTTAATCAAGATCGGCGACCATATCACTGAATGTTTGAAG
GAGTATTCCAATCCTGAGCAAATTAAGCAGTGGAGAAAAAACCTGTGGATTTTTGTTTCTAAGT
TTACTGAATTTGATGCAAGGAAATTACATAAATTATATAAGCATGCTATTAAAAAACGACAAGA
ATCTCAGCAAAACAGTGACCAGAATAGCAATGTTCCTACCACTCATGTGATTAGGAATCCAGAC
ATGGAAAGGTTAAAAGAGAATACAAATCACGATGACAGCAGCAGGGACGGCTACTCTTCGGACA
GACACTTATCTCAGTGCCATGATCATCACAAGGACCGCCATCAGGGAGACTCTTATAAAAAGAG
TGACTCTCGGAAGAGACCCTACTCCTCATTTAGCAACGGCAAAGACCATCGCGAGTGGGATCAC
TACAGGCAAGACAGTAGGTACTATAGTGACAGAGAGAAACACAGAAAACTGGATGACCACAGGA
GTCGAGAGCACAGGCCAAGTGTGGAAGGCAGCTTAAAGGACAGGTGTCATTCTGACCACCGATC
TCACTCGGACCATCGGATGCATTCAGACCATCGCTCCAGCACTGAGCACACACACCATAAGTCT
TCCAGGGATTATAGGTACCTCTCAGATTGGCAGCTGGACCACCGAGCTGCCAGCAGTGGCCCTA
GGTCTCCTTTAGATCAGAGGTCTCCATATGGCTCCAGGTCCCCATTTGAACATTCAGCTGAACA
CAGAAGTACACCTGAACACACCTGGAGTAGTCGGAAGACATAACAGATACTGATGGTTTTGTCT
TTCTGGACTTCATTTTAGCCATAGATCATAAACCAACACAGTAATTGCCTTACATGACTTGAAA
GATACAAACAGCTCTTCTATCTATCGGTAGCAGTATTGTTACTTCTTTCCAGGACGCAAGGTCT
ATTATCCCAACAGAAGAGAAGATATTTTTATATTTAAGGATTATGCTGCACTGTACTGCAATAC
TGTAGTACCTTTTTTTCTTTTTTTAAAGAAATGGAAAATGTTTACTATACCAGGGACCTCAGCA
CTGCCCTCCCGTGTAGGCTGTATAAAACTGTTTATACGTCAGTGATTTTAGACTGACTCCATTT
AAATTATGTTTGTATATGAACTTTACTCTGACCTGTGATCATGTTTCAGGAAGGAATGAAAGAG
AGGTCTTTTCTTAATAAAGAAAAATCGCTCAAGGACTTTGTTCACTTTCCAAAGCTACTTGTTT
ACATTGTACACTGCGACCACCTTGCCGCTTCCCGTCACAAGCTTGAATATTTAAATCCTGTACT
GAAGTCTGTAAGATAGCCGGGAACTTCCTGTTTGTGATTATTATTATGCCTTTTTACAGAAGAA
GATGGCTGTAAATTATTGTAAATGTATAAATGAGCTTTCCTTCCTTACCCTTCTCAGGCTTCTT
CTGACTGTTCCTTTCCCTACCAACTCAGGCCTTCTTATTAAAAAAAAAAAAATCAGTGTAATAA
CACTCTTTAATGATTTGTCTCGATGGAATCATTGTTTAGAATGTAAAAATGGGGAAAGGGGCCA
CTTATTCATTTCGTCCTCTTTTTATATTGAATATTTTTGTTAGATACATGTTTTACCCCTCCTT
TTTAAAGTCAATTTTGTGTTTGTAGTTTTTACAGAAGAAGAAGTGGTGAGGGTTACATGTGAGA
TAGAAACTTGATGCTCTGGGAAAGTTTGCAGATGCATTTGGTTTAAAAGGGTAGGTGTGTGAAC
ACTTTCAAAATCCAGACTGGCCAAACGTTCTTGTGAGTCCATTTGTTTTCCCTCTCACGTGGGC
AATAATGTCAAATGTGCTATGCAGCCAGGCTAACATTTTAGACGGACTTGATTGACTTTTTAAT
ATAAACTGTTACAGTGCACACTGATTGTACATAAAACCTTATATATGACAAATTAAATTCTAAG
AAAAAGGATATGTGGGCTCCTGGAGTTTCTGCTGCATCCTTGTTTCCTCAAGCATTTAATCTTT
TGTTTTAAGTAACTGCTGCCAGAAAGAAAGGTGTTTTGGT

hide sequence

RefSeq Acc Id:

XM_039110776 ⟹ XP_038966704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,335,444 - 65,402,270 (+)	NCBI
mRatBN7.2	1	56,662,282 - 56,729,119 (+)	NCBI

RefSeq Acc Id:

XM_039110782 ⟹ XP_038966710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,334,905 - 65,402,270 (+)	NCBI
mRatBN7.2	1	56,661,743 - 56,728,029 (+)	NCBI

RefSeq Acc Id:

XM_039110785 ⟹ XP_038966713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,335,802 - 65,402,270 (+)	NCBI
mRatBN7.2	1	56,662,714 - 56,728,029 (+)	NCBI

RefSeq Acc Id:

XM_039110789 ⟹ XP_038966717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,335,444 - 65,381,621 (+)	NCBI
mRatBN7.2	1	56,662,282 - 56,708,463 (+)	NCBI

RefSeq Acc Id:

XM_063288558 ⟹ XP_063144628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,335,801 - 65,381,621 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100935	(Get FASTA)	NCBI Sequence Viewer
	XP_038966704	(Get FASTA)	NCBI Sequence Viewer
	XP_038966710	(Get FASTA)	NCBI Sequence Viewer
	XP_038966713	(Get FASTA)	NCBI Sequence Viewer
	XP_038966717	(Get FASTA)	NCBI Sequence Viewer
	XP_063144628	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99810	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019358.8
	ENSRNOP00000073550
	ENSRNOP00000073550.2
	ENSRNOP00000104287

RefSeq Acc Id:

NP_001100935 ⟸ NM_001107465

- UniProtKB:

D4AAG9 (UniProtKB/TrEMBL), A6KB55 (UniProtKB/TrEMBL), A0A0G2K5T4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGHSDEESVRNGSGESSQSEDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSES
ESDTSRENKVQAKPPKVDGAEFWKSNPSILAVQRSAMLRKQTQQPQQQRPASSNSGSEEDSSSS
EDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSESEDERDKSSCDGTESDYEPKNKVKSRKP
QNRSKSKSGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEV
CGEDVPQTEDEEFETIERFMDCRVGRKGATGATTTIYAIEADGDPNAGFEKSKEPGDVQYLIKW
KGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHK
QYQIVERIIAHSNQKSAAGLPDYYCKWQGLPYSECSWEDGALISKKFQTCIDEYFSRNQSKTTP
FKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTI
QTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH
PQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLIT
GTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSL
PAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDN
NEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRL
DGSIKGELRRQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARA
HRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSN
MDEDDIELEPERNSKNWEDIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRS
RSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD
AELVDKSETDLRRLGELVHNGCVKALKDSSSGTERAGGRLGKVKGPTFRISGVQVNAKLVIAHE
DELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL
SLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEAQRLSGAGGSKRRKTRAKKNKAMKS
IKVKEEIKSDSSPLPSERSEEEDDNVNDSKPESKDRSKKSVVSDAPVHITASGEPVPIAEESEE
LDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIK
QWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNSDQNSNVPTTHVIRNPDMERLKENTN
HDDSSRDGYSSDRHLSQCHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHREWDHYRQDSRYYS
DREKHRKLDDHRSREHRPSVEGSLKDRCHSDHRSHSDHRMHSDHRSSTEHTHHKSSRDYRYLSD
WQLDHRAASSGPRSPLDQRSPYGSRSPFEHSAEHRSTPEHTWSSRKT

hide sequence

Ensembl Acc Id:

ENSRNOP00000073550 ⟸ ENSRNOT00000083968

Ensembl Acc Id:

ENSRNOP00000019358 ⟸ ENSRNOT00000019358

RefSeq Acc Id:	XP_038966710 ⟸ XM_039110782
- Peptide Label:	isoform X1
- UniProtKB:	D4AAG9 (UniProtKB/TrEMBL), A6KB55 (UniProtKB/TrEMBL), A0A0G2K5T4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966704 ⟸ XM_039110776
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038966717 ⟸ XM_039110789
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038966713 ⟸ XM_039110785
- Peptide Label:	isoform X1
- UniProtKB:	D4AAG9 (UniProtKB/TrEMBL), A6KB55 (UniProtKB/TrEMBL), A0A0G2K5T4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144628 ⟸ XM_063288558
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000104287 ⟸ ENSRNOT00000133383

Protein Domains

Chromo Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAG9-F1-model_v2	AlphaFold	D4AAG9	1-1711	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306794	AgrOrtholog
BioCyc Gene	G2FUF-61291	BioCyc
Ensembl Genes	ENSRNOG00000014434	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019358.8	UniProtKB/TrEMBL
	ENSRNOT00000083968	ENTREZGENE
	ENSRNOT00000083968.2	UniProtKB/TrEMBL
	ENSRNOT00000133383	ENTREZGENE
Gene3D-CATH	2.40.50.40	UniProtKB/TrEMBL
	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CDH1_2_SANT_HL1	UniProtKB/TrEMBL
	Chromo_domain	UniProtKB/TrEMBL
	Chromodomain	UniProtKB/TrEMBL
	Chromodomain-like	UniProtKB/TrEMBL
	Chromodomain_CS	UniProtKB/TrEMBL
	DEAD-like_N	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	DUF4208	UniProtKB/TrEMBL
	Hrp3-like_HTH	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
KEGG Report	rno:308215	UniProtKB/TrEMBL
NCBI Gene	308215	ENTREZGENE
PANTHER	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1	UniProtKB/TrEMBL
	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	UniProtKB/TrEMBL
Pfam	CDH1_2_SANT_HL1	UniProtKB/TrEMBL
	Chromo	UniProtKB/TrEMBL
	DUF4208	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	Hrp3	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PhenoGen	Chd1	PhenoGen
PROSITE	CHROMO_1	UniProtKB/TrEMBL
	CHROMO_2	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014434	RatGTEx
SMART	CHROMO	UniProtKB/TrEMBL
	DEXDc	UniProtKB/TrEMBL
	DUF4208	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	Chromodomain-like	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K5T4	ENTREZGENE, UniProtKB/TrEMBL
	A6KB55	ENTREZGENE, UniProtKB/TrEMBL
	D4AAG9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Chd1	chromodomain helicase DNA binding protein 1	Chd1_predicted	chromodomain helicase DNA binding protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Chd1_predicted	chromodomain helicase DNA binding protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

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