Cope (COPI coat complex subunit epsilon) - Rat Genome Database

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Gene: Cope (COPI coat complex subunit epsilon) Rattus norvegicus
Analyze
Symbol: Cope
Name: COPI coat complex subunit epsilon
RGD ID: 1306785
Description: Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein localization to axon. Predicted to be located in COPI-coated vesicle; Golgi apparatus; and nucleoplasm. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coatomer protein complex, subunit epsilon; coatomer subunit epsilon; LOC290659
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,148,832 - 19,159,052 (-)NCBIGRCr8
mRatBN7.21619,114,871 - 19,125,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,114,871 - 19,128,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,154,662 - 19,164,872 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,287,172 - 20,297,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,207,623 - 19,217,833 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,863,141 - 20,873,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,863,141 - 20,873,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,714,916 - 20,725,283 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,602,842 - 19,609,515 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,598,764 - 19,609,319 (-)NCBI
Celera1619,308,848 - 19,315,509 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4,6-trinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aconitine  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
bufalin  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
glafenine  (EXP)
hydralazine  (ISO)
ivermectin  (ISO)
maneb  (ISO)
methidathion  (ISO)
nefazodone  (EXP)
nitrates  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14645249   PMID:21300694   PMID:25002582  


Genomics

Comparative Map Data
Cope
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,148,832 - 19,159,052 (-)NCBIGRCr8
mRatBN7.21619,114,871 - 19,125,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,114,871 - 19,128,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,154,662 - 19,164,872 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,287,172 - 20,297,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,207,623 - 19,217,833 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,863,141 - 20,873,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,863,141 - 20,873,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,714,916 - 20,725,283 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,602,842 - 19,609,515 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,598,764 - 19,609,319 (-)NCBI
Celera1619,308,848 - 19,315,509 (-)NCBICelera
Cytogenetic Map16p14NCBI
COPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,899,514 - 18,919,387 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,899,514 - 18,919,387 (-)EnsemblGRCh38hg38GRCh38
GRCh371919,010,323 - 19,030,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,871,323 - 18,891,199 (-)NCBINCBI36Build 36hg18NCBI36
Build 341918,871,322 - 18,891,199NCBI
Celera1918,915,147 - 18,935,023 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,574,751 - 18,594,613 (-)NCBIHuRef
CHM1_11919,009,997 - 19,029,866 (-)NCBICHM1_1
T2T-CHM13v2.01919,035,138 - 19,055,145 (-)NCBIT2T-CHM13v2.0
Cope
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,755,417 - 70,765,652 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,755,168 - 70,765,643 (+)EnsemblGRCm39 Ensembl
GRCm38870,302,767 - 70,313,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,302,518 - 70,312,993 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,826,684 - 72,836,889 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,231,774 - 73,241,979 (+)NCBIMGSCv36mm8
Celera872,859,282 - 72,869,463 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Cope
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,767,997 - 2,779,671 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,767,996 - 2,779,671 (+)NCBIChiLan1.0ChiLan1.0
COPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,761,008 - 23,780,688 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,767,216 - 22,787,079 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,337,678 - 18,357,399 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,345,680 - 19,364,737 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,345,680 - 19,364,737 (-)Ensemblpanpan1.1panPan2
COPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,195,198 - 44,211,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,195,231 - 44,211,617 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,110,594 - 44,127,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,682,117 - 44,698,534 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,682,162 - 44,698,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,919,406 - 43,935,822 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,329,615 - 44,346,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,605,077 - 44,621,505 (+)NCBIUU_Cfam_GSD_1.0
Cope
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,873,846 - 202,890,428 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,422,947 - 2,439,749 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,422,988 - 2,439,567 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,930,931 - 58,948,469 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,930,929 - 58,948,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,729,731 - 58,747,267 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,354,926 - 17,375,935 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,354,508 - 17,375,922 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,948,377 - 1,968,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cope
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,951,403 - 1,963,459 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,951,845 - 1,963,474 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cope
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:128
Interacting mature miRNAs:145
Transcripts:ENSRNOT00000027381
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat

Markers in Region
RH129667  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81619,148,845 - 19,149,118 (+)Marker Load Pipeline
mRatBN7.21619,114,884 - 19,115,157 (+)MAPPERmRatBN7.2
Rnor_6.01620,863,155 - 20,863,427NCBIRnor6.0
Rnor_5.01620,714,930 - 20,715,202UniSTSRnor5.0
RGSC_v3.41619,598,781 - 19,599,053UniSTSRGSC3.4
Celera1619,305,200 - 19,305,472UniSTS
Cytogenetic Map16p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000027381   ⟹   ENSRNOP00000027381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,114,871 - 19,125,055 (-)Ensembl
Rnor_6.0 Ensembl1620,863,141 - 20,873,344 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,118,980 - 19,128,907 (-)Ensembl
Rnor_6.0 Ensembl1620,867,249 - 20,873,313 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1620,863,141 - 20,873,521 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1620,866,958 - 20,869,321 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092425   ⟹   ENSRNOP00000075805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,114,871 - 19,125,051 (-)Ensembl
Rnor_6.0 Ensembl1620,863,141 - 20,869,555 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092706   ⟹   ENSRNOP00000075848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1620,863,198 - 20,864,176 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105529   ⟹   ENSRNOP00000089951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,114,877 - 19,128,907 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112532   ⟹   ENSRNOP00000079373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,114,877 - 19,128,907 (-)Ensembl
RefSeq Acc Id: NM_001399438   ⟹   NP_001386367
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,148,832 - 19,159,037 (-)NCBI
mRatBN7.21619,114,871 - 19,125,076 (-)NCBI
RefSeq Acc Id: XM_063275186   ⟹   XP_063131256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,148,832 - 19,159,052 (-)NCBI
Ensembl Acc Id: ENSRNOP00000075805   ⟸   ENSRNOT00000092425
Ensembl Acc Id: ENSRNOP00000075848   ⟸   ENSRNOT00000092706
Ensembl Acc Id: ENSRNOP00000027381   ⟸   ENSRNOT00000027381
Ensembl Acc Id: ENSRNOP00000079373   ⟸   ENSRNOT00000112532
Ensembl Acc Id: ENSRNOP00000089951   ⟸   ENSRNOT00000105529
RefSeq Acc Id: NP_001386367   ⟸   NM_001399438
- UniProtKB: G3V8Q1 (UniProtKB/TrEMBL),   A0A8I6A9R8 (UniProtKB/TrEMBL),   A6KA61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131256   ⟸   XM_063275186
- Peptide Label: isoform X1
- UniProtKB: G3V8Q1 (UniProtKB/TrEMBL),   A6KA59 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V8Q1-F1-model_v2 AlphaFold G3V8Q1 1-308 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700039
Promoter ID:EPDNEW_R10560
Type:multiple initiation site
Name:Cope_1
Description:coatomer protein complex, subunit epsilon
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01620,873,333 - 20,873,393EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306785 AgrOrtholog
BioCyc Gene G2FUF-11770 BioCyc
Ensembl Genes ENSRNOG00000020178 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027381.8 UniProtKB/TrEMBL
  ENSRNOT00000092367.2 UniProtKB/TrEMBL
  ENSRNOT00000092425.2 UniProtKB/TrEMBL
  ENSRNOT00000105529 ENTREZGENE
  ENSRNOT00000105529.1 UniProtKB/TrEMBL
  ENSRNOT00000112532.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8374450 IMAGE-MGC_LOAD
InterPro Coatomer_esu UniProtKB/TrEMBL
  TPR-like_helical_dom UniProtKB/TrEMBL
MGC_CLONE MGC:187698 IMAGE-MGC_LOAD
NCBI Gene 290659 ENTREZGENE
PANTHER COATOMER SUBUNIT EPSILON UniProtKB/TrEMBL
  Coatomer_E UniProtKB/TrEMBL
Pfam Coatomer_E UniProtKB/TrEMBL
PhenoGen Cope PhenoGen
PIRSF Coatomer_esu UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020178 RatGTEx
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0U1RRT4_RAT UniProtKB/TrEMBL
  A0A8I5ZMP1_RAT UniProtKB/TrEMBL
  A0A8I6A9R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHM5_RAT UniProtKB/TrEMBL
  A6KA59 ENTREZGENE, UniProtKB/TrEMBL
  A6KA61 ENTREZGENE, UniProtKB/TrEMBL
  B1WBX7_RAT UniProtKB/TrEMBL
  G3V8Q1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Cope  COPI coat complex subunit epsilon  Cope  coatomer protein complex, subunit epsilon  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cope  coatomer protein complex, subunit epsilon   Cope_predicted  coatomer protein complex, subunit epsilon (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cope_predicted  coatomer protein complex, subunit epsilon (predicted)      Symbol and Name status set to approved 70820 APPROVED