Zswim6 (zinc finger, SWIM-type containing 6) - Rat Genome Database

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Gene: Zswim6 (zinc finger, SWIM-type containing 6) Rattus norvegicus
Analyze
Symbol: Zswim6
Name: zinc finger, SWIM-type containing 6
RGD ID: 1306624
Description: Predicted to be involved in striatal medium spiny neuron differentiation. Predicted to act upstream of or within neuron projection morphogenesis and regulation of neuron migration. Predicted to be located in stereocilium. Predicted to be part of Cul2-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in acromelic frontonasal dysostosis. Orthologous to human ZSWIM6 (zinc finger SWIM-type containing 6); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ab2-064; LOC310062; zinc finger SWIM domain-containing protein 6; zinc finger, SWIM domain containing 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2239,211,131 - 39,378,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0238,978,042 - 39,042,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,979,865 - 39,007,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0258,068,503 - 58,133,311 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4238,939,758 - 38,967,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1238,858,310 - 39,031,145 (-)NCBI
Celera235,056,022 - 35,120,828 (-)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22028030   PMID:25105228   PMID:28433741  


Genomics

Comparative Map Data
Zswim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2239,211,131 - 39,378,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0238,978,042 - 39,042,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl238,979,865 - 39,007,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0258,068,503 - 58,133,311 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4238,939,758 - 38,967,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1238,858,310 - 39,031,145 (-)NCBI
Celera235,056,022 - 35,120,828 (-)NCBICelera
Cytogenetic Map2q14NCBI
ZSWIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38561,332,258 - 61,546,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl561,332,258 - 61,546,172 (+)EnsemblGRCh38hg38GRCh38
GRCh37560,628,085 - 60,841,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36560,663,758 - 60,877,756 (+)NCBINCBI36Build 36hg18NCBI36
Celera557,764,647 - 57,838,148 (+)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef557,585,234 - 57,798,491 (+)NCBIHuRef
CHM1_1560,627,755 - 60,841,658 (+)NCBICHM1_1
T2T-CHM13v2.0562,151,402 - 62,365,278 (+)NCBIT2T-CHM13v2.0
Zswim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913107,861,152 - 108,026,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13107,861,152 - 108,026,598 (-)EnsemblGRCm39 Ensembl
GRCm3813107,724,617 - 107,890,064 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13107,724,617 - 107,890,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713108,514,697 - 108,680,258 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613108,845,002 - 109,010,895 (-)NCBIMGSCv36mm8
Celera13112,064,904 - 112,230,294 (-)NCBICelera
Cytogenetic Map13D2.1NCBI
Zswim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554467,011,836 - 7,188,521 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554467,010,005 - 7,188,763 (-)NCBIChiLan1.0ChiLan1.0
ZSWIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1554,095,105 - 54,169,700 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl554,096,958 - 54,305,965 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0552,453,762 - 52,664,847 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZSWIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,954,786 - 48,064,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,991,716 - 48,063,680 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,946,333 - 45,140,308 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0248,347,499 - 48,541,916 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl248,347,407 - 48,540,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,417,813 - 45,611,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,204,341 - 46,398,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0247,056,413 - 47,250,499 (+)NCBIUU_Cfam_GSD_1.0
Zswim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,113,031 - 198,302,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364807,051,334 - 7,239,677 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364807,049,499 - 7,239,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSWIM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1640,105,227 - 40,305,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11640,105,499 - 40,305,379 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21643,072,339 - 43,305,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSWIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1457,501,906 - 57,717,375 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660495,992,635 - 6,209,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zswim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248158,482,855 - 8,673,090 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248158,481,026 - 8,673,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zswim6
893 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:52
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000064292
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat

Markers in Region
D2Rat12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,374,376 - 39,374,529 (+)MAPPERmRatBN7.2
Rnor_6.0239,141,434 - 39,141,586NCBIRnor6.0
Rnor_5.0258,231,832 - 58,231,984UniSTSRnor5.0
RGSC_v3.4239,101,957 - 39,102,109UniSTSRGSC3.4
RGSC_v3.4239,101,956 - 39,102,109RGDRGSC3.4
RGSC_v3.1239,022,326 - 39,022,478RGD
Celera235,219,415 - 35,219,567UniSTS
RH 3.4 Map2177.4RGD
RH 3.4 Map2177.4UniSTS
RH 2.0 Map254.9RGD
SHRSP x BN Map216.1598RGD
FHH x ACI Map224.1699RGD
Cytogenetic Map2q14UniSTS
D2Got18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,362,913 - 39,363,105 (+)MAPPERmRatBN7.2
Rnor_6.0239,129,825 - 39,130,016NCBIRnor6.0
Rnor_5.0258,220,223 - 58,220,414UniSTSRnor5.0
RGSC_v3.4239,090,543 - 39,090,734RGDRGSC3.4
RGSC_v3.4239,090,543 - 39,090,734UniSTSRGSC3.4
RGSC_v3.1239,010,912 - 39,011,103RGD
Celera235,207,961 - 35,208,152UniSTS
RH 3.4 Map2177.1RGD
RH 3.4 Map2177.1UniSTS
RH 2.0 Map253.8RGD
Cytogenetic Map2q14UniSTS
D2Got22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,276,357 - 39,276,596 (+)MAPPERmRatBN7.2
Rnor_6.0239,043,267 - 39,043,505NCBIRnor6.0
Rnor_5.0258,133,726 - 58,133,964UniSTSRnor5.0
RGSC_v3.4239,003,165 - 39,003,404RGDRGSC3.4
RGSC_v3.4239,003,166 - 39,003,404UniSTSRGSC3.4
RGSC_v3.1238,923,535 - 38,923,773RGD
Celera235,121,209 - 35,121,447UniSTS
RH 3.4 Map2177.1UniSTS
RH 3.4 Map2177.1RGD
RH 2.0 Map253.8RGD
Cytogenetic Map2q14UniSTS
BM387016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,362,737 - 39,362,934 (+)MAPPERmRatBN7.2
Rnor_6.0239,129,649 - 39,129,845NCBIRnor6.0
Rnor_5.0258,220,047 - 58,220,243UniSTSRnor5.0
RGSC_v3.4239,090,367 - 39,090,563UniSTSRGSC3.4
Celera235,207,785 - 35,207,981UniSTS
RH 3.4 Map2177.2UniSTS
Cytogenetic Map2q14UniSTS
RH130599  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,211,251 - 39,211,469 (+)MAPPERmRatBN7.2
Rnor_6.0238,978,163 - 38,978,380NCBIRnor6.0
Rnor_5.0258,068,622 - 58,068,839UniSTSRnor5.0
RGSC_v3.4238,938,061 - 38,938,278UniSTSRGSC3.4
Celera235,056,143 - 35,056,360UniSTS
RH 3.4 Map2178.3UniSTS
Cytogenetic Map2q14UniSTS
RH144303  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,252,855 - 39,253,063 (+)MAPPERmRatBN7.2
Rnor_6.0239,019,766 - 39,019,973NCBIRnor6.0
Rnor_5.0258,110,225 - 58,110,432UniSTSRnor5.0
RGSC_v3.4238,979,665 - 38,979,872UniSTSRGSC3.4
Celera235,097,762 - 35,097,969UniSTS
RH 3.4 Map2177.3UniSTS
Cytogenetic Map2q14UniSTS
BI285441  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,356,717 - 39,356,879 (+)MAPPERmRatBN7.2
Rnor_6.0239,123,630 - 39,123,791NCBIRnor6.0
Rnor_5.0258,214,028 - 58,214,189UniSTSRnor5.0
RGSC_v3.4239,084,348 - 39,084,509UniSTSRGSC3.4
Celera235,201,768 - 35,201,929UniSTS
RH 3.4 Map2176.0UniSTS
Cytogenetic Map2q14UniSTS
BF397496  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,284,899 - 39,285,051 (+)MAPPERmRatBN7.2
Rnor_6.0239,051,804 - 39,051,955NCBIRnor6.0
Rnor_5.0258,142,263 - 58,142,414UniSTSRnor5.0
RGSC_v3.4239,012,607 - 39,012,758UniSTSRGSC3.4
Celera235,129,748 - 35,129,899UniSTS
RH 3.4 Map2176.0UniSTS
Cytogenetic Map2q14UniSTS
AU048211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,349,916 - 39,350,091 (+)MAPPERmRatBN7.2
Rnor_6.0239,116,950 - 39,117,124NCBIRnor6.0
Rnor_5.0258,207,409 - 58,207,583UniSTSRnor5.0
RGSC_v3.4239,077,620 - 39,077,794UniSTSRGSC3.4
Celera235,194,729 - 35,194,911UniSTS
Cytogenetic Map2q14UniSTS
AI008171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,319,895 - 39,320,115 (+)MAPPERmRatBN7.2
Rnor_6.0239,086,932 - 39,087,151NCBIRnor6.0
Rnor_5.0258,177,391 - 58,177,610UniSTSRnor5.0
RGSC_v3.4239,047,602 - 39,047,821UniSTSRGSC3.4
Celera235,164,718 - 35,164,937UniSTS
RH 3.4 Map2175.1UniSTS
Cytogenetic Map2q14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 4 10 4 17 4 74 23 32 11
Low 2 39 47 37 2 37 8 10 12 9 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064292   ⟹   ENSRNOP00000059251
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,212,949 - 39,378,924 (-)Ensembl
Rnor_6.0 Ensembl238,979,868 - 39,007,976 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078884   ⟹   ENSRNOP00000073696
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,212,949 - 39,236,051 (-)Ensembl
Rnor_6.0 Ensembl238,979,865 - 39,003,552 (-)Ensembl
RefSeq Acc Id: XM_039103499   ⟹   XP_038959427
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2239,211,131 - 39,378,877 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038959427 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAP92586 (Get FASTA)   NCBI Sequence Viewer  
  EDM10299 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSRNOP00000059251   ⟸   ENSRNOT00000064292
RefSeq Acc Id: ENSRNOP00000073696   ⟸   ENSRNOT00000078884
RefSeq Acc Id: XP_038959427   ⟸   XM_039103499

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TP63-F1-model_v2 AlphaFold Q7TP63 1-793 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306624 AgrOrtholog
BioCyc Gene G2FUF-54493 BioCyc
Ensembl Genes ENSRNOG00000014528 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059251.3 UniProtKB/TrEMBL
  ENSRNOP00000073696.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064292.4 UniProtKB/TrEMBL
  ENSRNOT00000078884.2 UniProtKB/TrEMBL
NCBI Gene 310062 ENTREZGENE
PhenoGen Zswim6 PhenoGen
UniProt A0A0G2K667_RAT UniProtKB/TrEMBL
  F1M5P6_RAT UniProtKB/TrEMBL
  Q7TP63_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-25 Zswim6  zinc finger, SWIM-type containing 6  Zswim6  zinc finger, SWIM domain containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Zswim6  zinc finger, SWIM domain containing 6  Zswim6_predicted  zinc finger, SWIM domain containing 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zswim6_predicted  zinc finger, SWIM domain containing 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED