Dst (dystonin) - Rat Genome Database

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Gene: Dst (dystonin) Rattus norvegicus
Analyze
Symbol: Dst
Name: dystonin
RGD ID: 1306566
Description: Predicted to enable several functions, including integrin binding activity; microtubule plus-end binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including cytoskeleton organization; hemidesmosome assembly; and maintenance of cell polarity. Predicted to act upstream of or within several processes, including cytoplasmic microtubule organization; regulation of microtubule polymerization or depolymerization; and retrograde axonal transport. Predicted to be located in several cellular components, including cytoskeleton; endoplasmic reticulum; and nucleus. Predicted to be active in several cellular components, including focal adhesion; hemidesmosome; and type III intermediate filament. Predicted to colocalize with intermediate filament. Human ortholog(s) of this gene implicated in epidermolysis bullosa simplex and hereditary sensory and autonomic neuropathy type 6. Orthologous to human DST (dystonin); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bullous pemphigoid antigen 1; LOC316313
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,631,716 - 44,025,535 (+)NCBIGRCr8
mRatBN7.2936,135,657 - 36,529,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl936,135,284 - 36,529,615 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx944,733,010 - 45,026,540 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,864,187 - 50,157,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0948,146,091 - 48,439,616 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0937,902,336 - 38,296,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,902,303 - 38,196,273 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0937,586,701 - 37,979,658 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4932,757,554 - 33,051,275 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1932,758,967 - 33,051,638 (+)NCBI
Celera933,927,773 - 34,321,367 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (EXP)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
melphalan  (ISO)
methamphetamine  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
ML-7  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-ethyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP)
Octicizer  (ISO)
oleic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
permethrin  (EXP)
phenethyl isothiocyanate  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
Ptaquiloside  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenomethionine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
Y-27632  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1634998   PMID:7736575   PMID:8707838   PMID:8889548   PMID:10428034   PMID:11375975   PMID:11751855   PMID:12482924   PMID:14576348   PMID:14581450   PMID:16289082   PMID:17114649  
PMID:17287360   PMID:18638474   PMID:19403692   PMID:19632184   PMID:19932097   PMID:20209123   PMID:21423176   PMID:21630459   PMID:23269794   PMID:23376485   PMID:33450132  


Genomics

Comparative Map Data
Dst
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,631,716 - 44,025,535 (+)NCBIGRCr8
mRatBN7.2936,135,657 - 36,529,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl936,135,284 - 36,529,615 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx944,733,010 - 45,026,540 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,864,187 - 50,157,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0948,146,091 - 48,439,616 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0937,902,336 - 38,296,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,902,303 - 38,196,273 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0937,586,701 - 37,979,658 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4932,757,554 - 33,051,275 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1932,758,967 - 33,051,638 (+)NCBI
Celera933,927,773 - 34,321,367 (+)NCBICelera
Cytogenetic Map9q21NCBI
DST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38656,457,996 - 56,954,830 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl656,457,987 - 56,954,830 (-)EnsemblGRCh38hg38GRCh38
GRCh37656,322,794 - 56,819,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36656,430,744 - 56,816,422 (-)NCBINCBI36Build 36hg18NCBI36
Celera657,984,956 - 58,169,868 (-)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef656,158,712 - 56,652,953 (-)NCBIHuRef
CHM1_1656,325,822 - 56,819,767 (-)NCBICHM1_1
T2T-CHM13v2.0656,299,279 - 56,793,877 (-)NCBIT2T-CHM13v2.0
Dst
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,946,969 - 34,347,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,947,306 - 34,347,742 (+)EnsemblGRCm39 Ensembl
GRCm38133,907,888 - 34,308,662 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,908,225 - 34,308,661 (+)EnsemblGRCm38mm10GRCm38
MGSCv37134,068,670 - 34,365,497 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36133,956,371 - 34,253,198 (+)NCBIMGSCv36mm8
Celera133,786,289 - 34,078,455 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map112.91NCBI
Dst
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555023,267,527 - 3,610,823 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555023,175,918 - 3,610,823 (+)NCBIChiLan1.0ChiLan1.0
DST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2570,931,526 - 71,425,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1666,808,384 - 67,306,877 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0656,014,832 - 56,513,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1657,646,402 - 58,144,563 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl657,646,402 - 58,039,636 (-)Ensemblpanpan1.1panPan2
DST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11223,715,637 - 24,195,220 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1223,716,466 - 24,195,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1223,605,476 - 24,084,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01224,213,304 - 24,693,512 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1224,213,299 - 24,576,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11223,705,703 - 24,191,186 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01223,812,683 - 24,292,223 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01223,943,092 - 24,423,680 (-)NCBIUU_Cfam_GSD_1.0
Dst
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494659,187,310 - 59,615,541 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364764,344,716 - 4,771,878 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364764,344,673 - 4,772,892 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl728,812,252 - 29,300,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1728,812,423 - 29,300,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2733,273,626 - 33,751,908 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11714,652,044 - 15,133,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1714,652,233 - 15,133,862 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605821,021,492 - 21,263,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dst
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475318,321,591 - 18,674,329 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475318,321,591 - 18,778,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dst
2829 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:526
Count of miRNA genes:187
Interacting mature miRNAs:206
Transcripts:ENSRNOT00000016538, ENSRNOT00000017235, ENSRNOT00000044452, ENSRNOT00000046621, ENSRNOT00000060007, ENSRNOT00000068447
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat

Markers in Region
D9Rat191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,503,273 - 36,503,422 (-)MAPPERmRatBN7.2
Rnor_6.0937,928,384 - 37,928,532NCBIRnor6.0
Rnor_5.0937,612,749 - 37,612,897UniSTSRnor5.0
RGSC_v3.4933,024,934 - 33,025,083RGDRGSC3.4
RGSC_v3.4933,024,935 - 33,025,083UniSTSRGSC3.4
RGSC_v3.1933,026,348 - 33,026,497RGD
Celera934,295,042 - 34,295,190UniSTS
FHH x ACI Map924.71UniSTS
FHH x ACI Map924.71RGD
Cytogenetic Map9q21UniSTS
BF405229  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,515,662 - 36,516,374 (-)MAPPERmRatBN7.2
Rnor_6.0937,915,433 - 37,916,144NCBIRnor6.0
Rnor_5.0937,599,798 - 37,600,509UniSTSRnor5.0
RGSC_v3.4933,037,323 - 33,038,034UniSTSRGSC3.4
Celera934,307,430 - 34,308,141UniSTS
RH 3.4 Map9343.3UniSTS
Cytogenetic Map9q21UniSTS
RH143165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,404,892 - 36,405,140 (-)MAPPERmRatBN7.2
Rnor_6.0938,027,045 - 38,027,292NCBIRnor6.0
Rnor_5.0937,711,410 - 37,711,657UniSTSRnor5.0
RGSC_v3.4932,926,585 - 32,926,832UniSTSRGSC3.4
Celera934,196,674 - 34,196,921UniSTS
RH 3.4 Map9344.9UniSTS
Cytogenetic Map9q21UniSTS
AI175602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,458,275 - 36,458,438 (-)MAPPERmRatBN7.2
Rnor_6.0937,973,354 - 37,973,516NCBIRnor6.0
Rnor_5.0937,657,719 - 37,657,881UniSTSRnor5.0
RGSC_v3.4932,979,964 - 32,980,126UniSTSRGSC3.4
Celera934,250,049 - 34,250,211UniSTS
RH 3.4 Map9338.09UniSTS
Cytogenetic Map9q21UniSTS
STS-Z40753  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0937,739,273 - 37,739,738NCBIRnor5.0
RGSC_v3.4932,898,504 - 32,898,968UniSTSRGSC3.4
Celera934,168,593 - 34,169,057UniSTS
Cytogenetic Map9q21UniSTS
fc48d10.y1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,279,774 - 36,280,241 (-)MAPPERmRatBN7.2
Rnor_6.0938,152,123 - 38,152,589NCBIRnor6.0
Rnor_5.0937,836,488 - 37,836,954UniSTSRnor5.0
RGSC_v3.4932,801,471 - 32,801,937UniSTSRGSC3.4
Celera934,071,562 - 34,072,028UniSTS
Cytogenetic Map9q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 43 35 19 18 19 8 10 74 35 41 11 8
Low 2 22 22 1 22 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CB325745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000044452   ⟹   ENSRNOP00000043470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,236,085 - 36,529,615 (+)Ensembl
Rnor_6.0 Ensembl937,902,303 - 38,196,273 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095264   ⟹   ENSRNOP00000082222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,236,022 - 36,529,615 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095842   ⟹   ENSRNOP00000091179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,340,918 - 36,529,615 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096417   ⟹   ENSRNOP00000080301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,135,284 - 36,529,615 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101194   ⟹   ENSRNOP00000082905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,230,019 - 36,529,615 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102656   ⟹   ENSRNOP00000094042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,236,085 - 36,529,615 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103786   ⟹   ENSRNOP00000096628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,379,977 - 36,405,354 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112664   ⟹   ENSRNOP00000087471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,379,977 - 36,529,615 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119100   ⟹   ENSRNOP00000077437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,230,019 - 36,356,072 (+)Ensembl
RefSeq Acc Id: NM_001108208   ⟹   NP_001101678
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,732,022 - 44,025,535 (+)NCBI
mRatBN7.2936,236,085 - 36,529,617 (+)NCBI
RefSeq Acc Id: XM_006244701   ⟹   XP_006244763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,836,293 - 44,025,535 (+)NCBI
mRatBN7.2936,340,334 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,091,326 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244713   ⟹   XP_006244775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244714   ⟹   XP_006244776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,044 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,196,244 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244716   ⟹   XP_006244778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,872,694 - 43,901,390 (+)NCBI
mRatBN7.2936,376,765 - 36,405,481 (+)NCBI
Rnor_6.0938,026,704 - 38,055,436 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766967   ⟹   XP_008765189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,770 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766968   ⟹   XP_008765190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,833 - 44,025,535 (+)NCBI
mRatBN7.2936,236,157 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,196,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596770   ⟹   XP_017452259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596771   ⟹   XP_017452260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596772   ⟹   XP_017452261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596773   ⟹   XP_017452262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596774   ⟹   XP_017452263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596775   ⟹   XP_017452264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596776   ⟹   XP_017452265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596777   ⟹   XP_017452266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596779   ⟹   XP_017452268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,725,512 - 44,025,535 (+)NCBI
mRatBN7.2936,229,876 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,202,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596780   ⟹   XP_017452269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596781   ⟹   XP_017452270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,045 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,196,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596783   ⟹   XP_017452272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,047 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,196,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596784   ⟹   XP_017452273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,689 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,819 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596785   ⟹   XP_017452274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596786   ⟹   XP_017452275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083554   ⟹   XP_038939482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,689 - 36,529,617 (+)NCBI
RefSeq Acc Id: XM_039083555   ⟹   XP_038939483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,689 - 36,528,566 (+)NCBI
RefSeq Acc Id: XM_039083556   ⟹   XP_038939484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,833 - 44,025,535 (+)NCBI
mRatBN7.2936,236,157 - 36,528,566 (+)NCBI
RefSeq Acc Id: XM_039083558   ⟹   XP_038939486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,045 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,529,617 (+)NCBI
RefSeq Acc Id: XM_063267132   ⟹   XP_063123202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267134   ⟹   XP_063123204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267135   ⟹   XP_063123205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,725,512 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267136   ⟹   XP_063123206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,046 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267138   ⟹   XP_063123208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267139   ⟹   XP_063123209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,837,426 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267140   ⟹   XP_063123210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,725,512 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267142   ⟹   XP_063123212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,872,747 - 44,025,535 (+)NCBI