Scara5 (scavenger receptor class A, member 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Scara5 (scavenger receptor class A, member 5) Rattus norvegicus
Analyze
Symbol: Scara5
Name: scavenger receptor class A, member 5
RGD ID: 1306539
Description: Predicted to enable ferritin receptor activity. Predicted to be involved in several processes, including intracellular iron ion homeostasis; iron ion transmembrane transport; and protein homotrimerization. Predicted to act upstream of or within cellular response to heat. Predicted to be located in cell surface and plasma membrane. Orthologous to human SCARA5 (scavenger receptor class A member 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305974; RGD1306539; scavenger receptor class A member 5; scavenger receptor class A, member 5 (putative); similar to RIKEN cDNA 4933425F03
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81544,055,576 - 44,160,593 (+)NCBIGRCr8
mRatBN7.21539,880,017 - 39,985,007 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,880,035 - 39,983,373 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1541,744,215 - 41,849,282 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01542,894,412 - 42,999,482 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01541,340,405 - 41,445,347 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01549,069,142 - 49,177,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1549,069,145 - 49,177,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01552,807,988 - 52,912,488 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41545,083,644 - 45,189,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11545,112,218 - 45,202,970 (+)NCBI
Celera1539,553,541 - 39,658,427 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP,ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
diethyl phthalate  (ISO)
diiodine  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
Erionite  (ISO)
ferric oxide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glycidol  (EXP)
hexane-1,6-diamine  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
methapyrilene  (EXP,ISO)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
nitrofen  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trimellitic anhydride  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16407294   PMID:18755693   PMID:19154717   PMID:21810271  


Genomics

Comparative Map Data
Scara5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81544,055,576 - 44,160,593 (+)NCBIGRCr8
mRatBN7.21539,880,017 - 39,985,007 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,880,035 - 39,983,373 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1541,744,215 - 41,849,282 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01542,894,412 - 42,999,482 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01541,340,405 - 41,445,347 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01549,069,142 - 49,177,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1549,069,145 - 49,177,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01552,807,988 - 52,912,488 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41545,083,644 - 45,189,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11545,112,218 - 45,202,970 (+)NCBI
Celera1539,553,541 - 39,658,427 (+)NCBICelera
Cytogenetic Map15p12NCBI
SCARA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38827,869,883 - 27,992,673 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl827,869,883 - 27,992,673 (-)EnsemblGRCh38hg38GRCh38
GRCh37827,727,400 - 27,850,190 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36827,783,655 - 27,906,117 (-)NCBINCBI36Build 36hg18NCBI36
Celera826,687,547 - 26,810,041 (-)NCBICelera
Cytogenetic Map8p21.1NCBI
HuRef826,272,203 - 26,395,878 (-)NCBIHuRef
CHM1_1827,929,218 - 28,052,486 (-)NCBICHM1_1
T2T-CHM13v2.0828,147,213 - 28,270,893 (-)NCBIT2T-CHM13v2.0
Scara5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391465,903,852 - 66,002,275 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1465,903,852 - 66,002,275 (+)EnsemblGRCm39 Ensembl
GRCm381465,666,403 - 65,764,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1465,666,403 - 65,764,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv371466,285,240 - 66,383,663 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361464,620,537 - 64,718,936 (+)NCBIMGSCv36mm8
Celera1463,417,881 - 63,517,650 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.35NCBI
Scara5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540350,386,125 - 50,486,361 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540350,386,212 - 50,486,335 (-)NCBIChiLan1.0ChiLan1.0
SCARA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2746,404,842 - 46,532,377 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1822,119,139 - 22,246,707 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0827,143,737 - 27,271,301 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1824,345,260 - 24,469,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl824,345,260 - 24,469,881 (-)Ensemblpanpan1.1panPan2
SCARA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12529,591,248 - 29,714,159 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2529,591,294 - 29,712,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2530,244,446 - 30,367,343 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02529,783,775 - 29,905,783 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2529,783,862 - 29,905,760 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12529,713,016 - 29,835,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02529,594,206 - 29,717,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02529,760,500 - 29,883,455 (+)NCBIUU_Cfam_GSD_1.0
Scara5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049437,718,073 - 7,794,248 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936675765,378 - 863,843 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936675763,467 - 868,021 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCARA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11411,615,629 - 11,747,336 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21412,845,888 - 12,978,031 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCARA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1825,975,310 - 26,097,312 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl825,975,122 - 26,097,102 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605216,040,831 - 16,162,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scara5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475822,663,129 - 22,753,776 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475822,661,136 - 22,757,578 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Scara5
509 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:61
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000019487
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
D15Rat120  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81544,094,824 - 44,094,935 (+)Marker Load Pipeline
mRatBN7.21539,919,237 - 39,919,348 (+)MAPPERmRatBN7.2
Rnor_6.01549,111,041 - 49,111,151NCBIRnor6.0
Rnor_5.01552,847,018 - 52,847,128UniSTSRnor5.0
RGSC_v3.41545,124,534 - 45,124,641RGDRGSC3.4
RGSC_v3.41545,124,531 - 45,124,641UniSTSRGSC3.4
RGSC_v3.11545,140,234 - 45,140,341RGD
Celera1539,592,707 - 39,592,817UniSTS
SHRSP x BN Map1533.4699UniSTS
SHRSP x BN Map1533.4699RGD
Cytogenetic Map15p12UniSTS
D15Rat143  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81544,065,351 - 44,065,492 (+)Marker Load Pipeline
mRatBN7.21539,889,760 - 39,889,901 (+)MAPPERmRatBN7.2
Rnor_6.01549,081,619 - 49,081,759NCBIRnor6.0
Rnor_5.01552,817,596 - 52,817,736UniSTSRnor5.0
RGSC_v3.41545,094,621 - 45,094,762RGDRGSC3.4
RGSC_v3.41545,094,622 - 45,094,762UniSTSRGSC3.4
RGSC_v3.11545,110,321 - 45,110,462RGD
Celera1539,563,249 - 39,563,391UniSTS
RH 2.0 Map15275.0RGD
SHRSP x BN Map1533.4699RGD
Cytogenetic Map15p12UniSTS
D15Got47  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81544,094,762 - 44,094,922 (+)Marker Load Pipeline
mRatBN7.21539,919,175 - 39,919,335 (+)MAPPERmRatBN7.2
Rnor_6.01549,110,979 - 49,111,138NCBIRnor6.0
Rnor_5.01552,846,956 - 52,847,115UniSTSRnor5.0
RGSC_v3.41545,124,468 - 45,124,628RGDRGSC3.4
RGSC_v3.41545,124,469 - 45,124,628UniSTSRGSC3.4
RGSC_v3.11545,140,168 - 45,140,328RGD
Celera1539,592,645 - 39,592,804UniSTS
RH 2.0 Map15277.2RGD
Cytogenetic Map15p12UniSTS
30.MMHAP14FRB12.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,976,244 - 39,976,352 (+)MAPPERmRatBN7.2
Rnor_6.01549,168,397 - 49,168,504NCBIRnor6.0
Rnor_5.01552,903,726 - 52,903,833UniSTSRnor5.0
RGSC_v3.41545,180,449 - 45,180,556UniSTSRGSC3.4
Celera1539,649,665 - 39,649,772UniSTS
Cytogenetic Map15p12UniSTS
RH139634  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,984,637 - 39,984,817 (+)MAPPERmRatBN7.2
Rnor_6.01549,176,790 - 49,176,969NCBIRnor6.0
Rnor_5.01552,912,119 - 52,912,298UniSTSRnor5.0
RGSC_v3.41545,188,842 - 45,189,021UniSTSRGSC3.4
Celera1539,658,058 - 39,658,237UniSTS
Cytogenetic Map15p12UniSTS
RH138852  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,966,812 - 39,967,027 (+)MAPPERmRatBN7.2
Rnor_6.01549,158,965 - 49,159,179NCBIRnor6.0
Rnor_5.01552,894,294 - 52,894,508UniSTSRnor5.0
RGSC_v3.41545,171,017 - 45,171,231UniSTSRGSC3.4
Celera1539,640,233 - 39,640,447UniSTS
Cytogenetic Map15p12UniSTS
UniSTS:478958  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,950,854 - 39,951,157 (+)MAPPERmRatBN7.2
Rnor_6.01549,143,000 - 49,143,302NCBIRnor6.0
Rnor_5.01552,878,170 - 52,878,472UniSTSRnor5.0
RGSC_v3.41545,155,083 - 45,155,385UniSTSRGSC3.4
Celera1539,624,290 - 39,624,592UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 47 113 91 90 59 25 59 6 216 95 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000019487   ⟹   ENSRNOP00000019487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1539,880,035 - 39,983,373 (+)Ensembl
Rnor_6.0 Ensembl1549,069,145 - 49,177,166 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116802   ⟹   ENSRNOP00000077438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1539,880,035 - 39,962,357 (+)Ensembl
RefSeq Acc Id: NM_001135855   ⟹   NP_001129327
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81544,055,645 - 44,160,593 (+)NCBI
mRatBN7.21539,880,054 - 39,985,007 (+)NCBI
Rnor_6.01549,069,180 - 49,177,159 (+)NCBI
Rnor_5.01552,807,988 - 52,912,488 (+)NCBI
RGSC_v3.41545,083,644 - 45,189,211 (+)RGD
Celera1539,553,541 - 39,658,427 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252204   ⟹   XP_006252266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81544,055,576 - 44,160,592 (+)NCBI
mRatBN7.21539,880,017 - 39,985,006 (+)NCBI
Rnor_6.01549,069,142 - 49,177,158 (+)NCBI
Rnor_5.01552,807,988 - 52,912,488 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001129327 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418361 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252266 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85362 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019487.5
  ENSRNOP00000077438.1
RefSeq Acc Id: NP_001129327   ⟸   NM_001135855
- UniProtKB: A6K6K2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252266   ⟸   XM_006252204
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000019487   ⟸   ENSRNOT00000019487
Ensembl Acc Id: ENSRNOP00000077438   ⟸   ENSRNOT00000116802
Protein Domains
SRCR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A213-F1-model_v2 AlphaFold D4A213 1-493 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699790
Promoter ID:EPDNEW_R10313
Type:initiation region
Name:Scara5_1
Description:scavenger receptor class A, member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01549,069,161 - 49,069,221EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306539 AgrOrtholog
BioCyc Gene G2FUF-13349 BioCyc
Ensembl Genes ENSRNOG00000014398 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019487.6 UniProtKB/TrEMBL
  ENSRNOT00000116802.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.250.10 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Nematode_Cuticular_Collagen UniProtKB/TrEMBL
  SCARA5 UniProtKB/TrEMBL
  SRCR-like_dom_sf UniProtKB/TrEMBL
  SRCR-S1_Scavenger_Rcptor UniProtKB/TrEMBL
  Srcr_rcpt UniProtKB/TrEMBL
  Srcr_rcpt-rel UniProtKB/TrEMBL
KEGG Report rno:305974 UniProtKB/TrEMBL
NCBI Gene 305974 ENTREZGENE
PANTHER COLLAGEN UniProtKB/TrEMBL
  SCAVENGER RECEPTOR CLASS A MEMBER 3 UniProtKB/TrEMBL
  SRCR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SRCR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  SRCR UniProtKB/TrEMBL
PhenoGen Scara5 PhenoGen
PRINTS SPERACTRCPTR UniProtKB/TrEMBL
PROSITE SRCR_1 UniProtKB/TrEMBL
  SRCR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014398 RatGTEx
SMART SM00202 UniProtKB/TrEMBL
Superfamily-SCOP Srcr_receptor UniProtKB/TrEMBL
UniProt A0A8I5YCD6_RAT UniProtKB/TrEMBL
  A6K6K2 ENTREZGENE, UniProtKB/TrEMBL
  D3Z926 ENTREZGENE
  D4A213 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3Z926 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-16 Scara5  scavenger receptor class A, member 5  Scara5  scavenger receptor class A, member 5 (putative)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Scara5  scavenger receptor class A, member 5 (putative)   Scara5_predicted  scavenger receptor class A, member 5 (putative) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Scara5_predicted  scavenger receptor class A, member 5 (putative) (predicted)  RGD1306539_predicted  similar to RIKEN cDNA 4933425F03 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306539_predicted  similar to RIKEN cDNA 4933425F03 (predicted)  LOC305974_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305974_predicted  similar to RIKEN cDNA 4933425F03 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL