Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Galt | Rat | galactosemia | | ISO | GALT (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:22773758 | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Galt | Rat | galactosemia | | ISO | GALT (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:22773758 | |
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# | Reference Title | Reference Citation |
1. | Developmental aspects and some characteristics of mammalian galactose 1-phosphate uridyltransferase. | Bertoli D and Segal S, J Biol Chem. 1966 Sep 10;241(17):4023-9. |
2. | In vivo and in vitro expression of rat galactose-1-phosphate uridyltransferase (GALT) in the developing central and peripheral nervous system. | Daude N, etal., Brain Res Dev Brain Res. 1996 Jul 20;94(2):190-6. |
3. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
4. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
5. | Developmental and tissue-specific modulation of rat galactose-1-phosphate uridyltransferase steady state messenger RNA and specific activity levels. | Heidenreich RA, etal., Pediatr Res. 1993 Oct;34(4):416-9. |
6. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
7. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
8. | Online Mendelian Inheritance in Man, OMIM (TM). | Online Mendelian Inheritance in Man, OMIM (TM). |
9. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
10. | SMPDB Annotation Import Pipeline | Pipeline to import SMPDB annotations from SMPDB into RGD |
11. | GOA pipeline | RGD automated data pipeline |
12. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
13. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
14. | Modulation of rat tissue galactose-1-phosphate uridyltransferase by uridine and uridine triphosphate. | Rogers S and Segal S, Pediatr Res. 1991 Sep;30(3):222-6. |
15. | Activity of hepatic galactose-metabolizing enzymes in the pregnant rat and fetus. | Rogers SR, etal., Pediatr Res. 1989 Feb;25(2):161-6. |
16. | Development of a rat subline with symptoms of hereditary galactosemia and study of its biochemical characteristics | Solov'eva NA, etal., Genetika. 1975;11(5):63-71. |
PMID:1897530 | PMID:7323947 | PMID:8400361 | PMID:11286504 | PMID:12477932 | PMID:14741191 | PMID:20605918 | PMID:27005423 | PMID:31845342 | PMID:32882063 | PMID:34964137 |
Galt (Rattus norvegicus - Norway rat) |
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GALT (Homo sapiens - human) |
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Galt (Mus musculus - house mouse) |
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Galt (Chinchilla lanigera - long-tailed chinchilla) |
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GALT (Pan paniscus - bonobo/pygmy chimpanzee) |
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GALT (Canis lupus familiaris - dog) |
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Galt (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GALT (Sus scrofa - pig) |
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GALT (Chlorocebus sabaeus - green monkey) |
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Galt (Heterocephalus glaber - naked mole-rat) |
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Variants in Galt
6 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AW553376 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001013089 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006238033 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008763615 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017593237 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017593238 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039109440 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039109441 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287304 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC110351 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC098756 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
L05541 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000019886 ⟹ ENSRNOP00000019886 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001013089 ⟹ NP_001013107 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017593237 ⟹ XP_017448726 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039109440 ⟹ XP_038965368 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039109441 ⟹ XP_038965369 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063287304 ⟹ XP_063143374 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001013107 | (Get FASTA) | NCBI Sequence Viewer |
XP_017448726 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038965368 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038965369 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143374 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAC37609 | (Get FASTA) | NCBI Sequence Viewer |
AAH98756 | (Get FASTA) | NCBI Sequence Viewer | |
EDL98691 | (Get FASTA) | NCBI Sequence Viewer | |
EDL98692 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000019886.5 | ||
GenBank Protein | P43424 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001013107 ⟸ NM_001013089 |
- UniProtKB: | Q4KM61 (UniProtKB/Swiss-Prot), P43424 (UniProtKB/Swiss-Prot), A6IIX1 (UniProtKB/TrEMBL), A0A8L2QA97 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017448726 ⟸ XM_017593237 |
- Peptide Label: | isoform X3 |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000019886 ⟸ ENSRNOT00000019886 |
RefSeq Acc Id: | XP_038965368 ⟸ XM_039109440 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038965369 ⟸ XM_039109441 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063143374 ⟸ XM_063287304 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8L2QA97 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P43424-F1-model_v2 | AlphaFold | P43424 | 1-379 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13693658 | ||||||||
Promoter ID: | EPDNEW_R4183 | ||||||||
Type: | initiation region | ||||||||
Name: | Galt_1 | ||||||||
Description: | galactose-1-phosphate uridylyltransferase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1306483 | AgrOrtholog |
BioCyc Gene | G2FUF-41542 | BioCyc |
Ensembl Genes | ENSRNOG00000014766 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000019886.6 | UniProtKB/TrEMBL |
Gene3D-CATH | 3.30.428.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7370278 | IMAGE-MGC_LOAD |
InterPro | GalP_UDPtransf1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GalP_UDPtransf1_His-AS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GalP_Utransf_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GalP_Utransf_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
HIT-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:298003 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:112778 | IMAGE-MGC_LOAD |
NCBI Gene | 298003 | ENTREZGENE |
PANTHER | GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR11943 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | GalP_UDP_tr_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GalP_UDP_transf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Galt | PhenoGen |
PIRSF | GalT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | GAL_P_UDP_TRANSF_I | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000014766 | RatGTEx |
Superfamily-SCOP | SSF54197 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A8L2QA97 | ENTREZGENE, UniProtKB/TrEMBL |
A6IIX1 | ENTREZGENE, UniProtKB/TrEMBL | |
A6IIX2_RAT | UniProtKB/TrEMBL | |
GALT_RAT | UniProtKB/Swiss-Prot, ENTREZGENE | |
Q4KM61 | ENTREZGENE | |
UniProt Secondary | Q4KM61 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-10-17 | Galt | galactose-1-phosphate uridylyltransferase | Galt | galactose-1-phosphate uridyl transferase | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Galt | galactose-1-phosphate uridyl transferase | Galt_predicted | galactose-1-phosphate uridyl transferase (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Galt_predicted | galactose-1-phosphate uridyl transferase (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |