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Gene: Pcdh9 (protocadherin 9) Rattus norvegicus

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Symbol:

Pcdh9

Name:

protocadherin 9

RGD ID:

1306348

Description:

Predicted to enable cell adhesion molecule binding activity. Involved in forebrain development. Is active in glutamatergic synapse and synaptic membrane. Orthologous to human PCDH9 (protocadherin 9); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC120097141; LOC306091; protocadherin-9; uncharacterized LOC120097141

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCDH9 (protocadherin 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pcdh9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pcdh9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCDH9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCDH9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcdh9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCDH9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PCDH9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pcdh9 (protocadherin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PCDH9 (protocadherin 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pcdh9 (protocadherin 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pcdh9 (protocadherin 9)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cdh-9	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Drosophila melanogaster (fruit fly):	Cad96Cb	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	pcdh9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	76,078,024 - 76,127,778 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8	15	75,748,472 - 76,646,644 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	75,749,278 - 76,645,302 (-)	Ensembl				GRCr8
mRatBN7.2	15	69,340,108 - 70,237,531 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	69,340,645 - 70,237,538 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	73,385,787 - 74,283,083 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	74,471,032 - 75,368,337 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	71,367,999 - 72,310,028 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	76,787,108 - 77,738,668 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	80,341,840 - 80,658,843 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	15	80,956,263 - 81,286,488 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	75,827,180 - 76,739,147 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	68,728,387 - 69,614,167 (-)	NCBI		Celera
RGSC_v3.1	15	75,842,960 - 76,753,010 (-)	NCBI
Cytogenetic Map	15	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

chromosome 13q14 deletion syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (EXP)

15-acetyldeoxynivalenol (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

DDT (EXP)

diethylstilbestrol (EXP)

dioxygen (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

genistein (ISO)

ketoconazole (ISO)

maneb (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

paraquat (EXP,ISO)

PCB138 (ISO)

pentanal (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tert-butyl hydroperoxide (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IBA,IEA)

forebrain development (IEP)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

Cellular Component

cell-cell contact zone (IEA,ISO)

glutamatergic synapse (EXP,IBA,IDA,IEP)

growth cone (IEA,ISO)

membrane (IEA)

plasma membrane (IBA,IEA)

synaptic membrane (EXP,IDA,IEP)

Molecular Function

calcium ion binding (IEA)

cell adhesion molecule binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Spatiotemporal expression pattern of non-clustered protocadherin family members in the developing rat brain.	Kim SY, etal., Neuroscience. 2007 Jul 29;147(4):996-1021. Epub 2007 Jul 5.
3.	Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts.	Loh KH, etal., Cell. 2016 Aug 25;166(5):1295-1307.e21. doi: 10.1016/j.cell.2016.07.041.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:22982106

Genomics

Comparative Map Data

Pcdh9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	76,078,024 - 76,127,778 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8	15	75,748,472 - 76,646,644 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	75,749,278 - 76,645,302 (-)	Ensembl				GRCr8
mRatBN7.2	15	69,340,108 - 70,237,531 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	69,340,645 - 70,237,538 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	73,385,787 - 74,283,083 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	74,471,032 - 75,368,337 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	71,367,999 - 72,310,028 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	76,787,108 - 77,738,668 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	80,341,840 - 80,658,843 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	15	80,956,263 - 81,286,488 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	75,827,180 - 76,739,147 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	68,728,387 - 69,614,167 (-)	NCBI		Celera
RGSC_v3.1	15	75,842,960 - 76,753,010 (-)	NCBI
Cytogenetic Map	15	q21	NCBI

PCDH9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	66,302,834 - 67,230,336 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	66,302,834 - 67,230,445 (-)	Ensembl			hg38	GRCh38
GRCh37	13	66,876,966 - 67,804,468 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	65,774,967 - 66,702,464 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	65,774,967 - 66,702,464	NCBI
Celera	13	47,778,636 - 48,706,116 (-)	NCBI		Celera
Cytogenetic Map	13	q21.32	NCBI
HuRef	13	47,575,260 - 48,502,804 (-)	NCBI		HuRef
CHM1_1	13	66,844,545 - 67,771,982 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	65,522,767 - 66,450,396 (-)	NCBI		T2T-CHM13v2.0

Pcdh9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	93,251,136 - 94,132,619 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	93,250,846 - 94,128,115 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	93,013,700 - 93,892,834 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	93,013,410 - 93,890,679 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	93,412,920 - 94,287,951 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	91,896,835 - 92,773,764 (-)	NCBI		MGSCv36	mm8
MGSCv36	14	84,158,372 - 85,033,109 (-)	NCBI		MGSCv36	mm8
Celera	14	90,651,091 - 91,529,532 (-)	NCBI		Celera
Cytogenetic Map	14	E2.1	NCBI
cM Map	14	45.8	NCBI

Pcdh9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	38,667,015 - 39,532,423 (+)	Ensembl
ChiLan1.0	NW_004955404	38,666,480 - 39,534,211 (+)	NCBI	ChiLan1.0	ChiLan1.0

PCDH9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	67,859,201 - 68,775,102 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	66,450,616 - 67,366,559 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	47,512,960 - 48,430,521 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	66,308,482 - 67,224,143 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	66,310,212 - 67,222,134 (-)	Ensembl			panPan2	panpan1.1

PCDH9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	21,326,040 - 22,212,847 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	21,327,856 - 22,213,083 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	21,176,900 - 22,063,212 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	21,577,598 - 22,465,466 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	21,579,414 - 22,465,684 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	21,278,289 - 22,165,850 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	21,365,500 - 22,246,733 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	21,419,187 - 22,313,542 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pcdh9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	138,092,918 - 138,942,759 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936553	424,988 - 1,272,450 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936553	424,425 - 971,388 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCDH9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	38,523,033 - 39,453,741 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	38,522,221 - 39,455,166 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	41,808,073 - 42,265,226 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCDH9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	45,256,171 - 46,194,724 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666046	1,136,960 - 2,056,266 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcdh9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	27,606,224 - 28,543,269 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624748	27,604,426 - 28,543,256 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Pcdh9
6197 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	160
Count of miRNA genes:	125
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000057924
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	68327165	100062518	Rat
724545	Niddm54	Non-insulin dependent diabetes mellitus QTL 54		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	50794494	73699215	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
724548	Niddm55	Non-insulin dependent diabetes mellitus QTL 55		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	68327360	73699069	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
631516	Gluco31	Glucose level QTL 31	7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	55596089	95018120	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2317050	Aia24	Adjuvant induced arthritis QTL 24	2.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	52847908	73690657	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	60990468	73690657	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
731177	Uae26	Urinary albumin excretion QTL 26	2.4	0.025	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	15	67588667	101769107	Rat
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	53806152	98806152	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
61477	Aia4	Adjuvant induced arthritis QTL 4	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	15	55596089	91365858	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	58156477	101769107	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat

Markers in Region

D15Rat94

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,625,793 - 69,625,966 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	77,072,146 - 77,072,316	NCBI	Rnor6.0
Rnor_5.0	15	80,627,077 - 80,627,247	UniSTS	Rnor5.0
RGSC_v3.4	15	76,115,380 - 76,115,762	RGD	RGSC3.4
RGSC_v3.4	15	76,115,491 - 76,115,661	UniSTS	RGSC3.4
Celera	15	69,012,625 - 69,012,795	UniSTS
RGSC_v3.1	15	76,131,160 - 76,131,542	RGD
SHRSP x BN Map	15	41.3498	RGD
SHRSP x BN Map	15	41.3498	UniSTS
Cytogenetic Map	15	q21	UniSTS

D15Got211

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,545,428 - 69,545,505 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	76,991,703 - 76,991,779	NCBI	Rnor6.0
Rnor_5.0	15	80,546,433 - 80,546,509	UniSTS	Rnor5.0
RGSC_v3.4	15	76,034,917 - 76,034,993	UniSTS	RGSC3.4
Celera	15	68,932,391 - 68,932,467	UniSTS
Cytogenetic Map	15	q21	UniSTS

BE102165

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,898,848 - 69,898,997 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	77,397,613 - 77,397,761	NCBI	Rnor6.0
Rnor_5.0	15	80,949,492 - 80,949,640	UniSTS	Rnor5.0
RGSC_v3.4	15	76,396,481 - 76,396,629	UniSTS	RGSC3.4
Celera	15	69,278,271 - 69,278,419	UniSTS
Cytogenetic Map	15	q21	UniSTS

RH45841

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,340,410 - 69,340,548 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	76,787,411 - 76,787,548	NCBI	Rnor6.0
Rnor_5.0	15	80,342,141 - 80,342,278	UniSTS	Rnor5.0
RGSC_v3.4	15	75,827,481 - 75,827,618	UniSTS	RGSC3.4
Celera	15	68,728,689 - 68,728,826	UniSTS
Cytogenetic Map	15	q21	UniSTS

BE102662

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,705,889 - 69,706,061 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	77,164,994 - 77,165,165	NCBI	Rnor6.0
Rnor_5.0	15	80,719,657 - 80,719,828	UniSTS	Rnor5.0
RGSC_v3.4	15	76,198,767 - 76,198,938	UniSTS	RGSC3.4
Celera	15	69,092,212 - 69,092,383	UniSTS
Cytogenetic Map	15	q21	UniSTS

RH137936

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	70,212,748 - 70,212,894 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	77,713,859 - 77,714,004	NCBI	Rnor6.0
Rnor_5.0	15	81,263,572 - 81,263,717	UniSTS	Rnor5.0
RGSC_v3.4	15	76,714,386 - 76,714,531	UniSTS	RGSC3.4
Celera	15	69,591,251 - 69,591,396	UniSTS
Cytogenetic Map	15	q21	UniSTS

BF390670

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,913,712 - 69,913,909 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	77,411,078 - 77,411,274	NCBI	Rnor6.0
Rnor_5.0	15	80,962,957 - 80,963,153	UniSTS	Rnor5.0
RGSC_v3.4	15	76,411,340 - 76,411,536	UniSTS	RGSC3.4
Celera	15	69,293,090 - 69,293,286	UniSTS
Cytogenetic Map	15	q21	UniSTS

fb39b03.x1

Rat Assembly	Chr	Position (strand)	Source
Celera	15	68,735,414 - 68,737,035	UniSTS
Celera	15	68,735,432 - 68,737,035	UniSTS
Cytogenetic Map	15	q21	UniSTS

UniSTS:546922

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	69,340,247 - 69,341,246 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	76,787,248 - 76,788,246	NCBI	Rnor6.0
Rnor_5.0	15	80,341,978 - 80,342,976	UniSTS	Rnor5.0
Celera	15	68,728,525 - 68,729,524	UniSTS
Cytogenetic Map	15	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	13	70	205	61	60	29	43	29	6	310	151	19	196	113	109	31	45	45

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005494384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ863132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057924 ⟹ ENSRNOP00000054733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	75,749,278 - 76,645,302 (-)	Ensembl
mRatBN7.2 Ensembl	15	69,340,645 - 70,237,538 (-)	Ensembl
Rnor_6.0 Ensembl	15	77,733,402 - 77,736,892 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096830 ⟹ ENSRNOP00000077280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	75,749,278 - 76,645,302 (-)	Ensembl
mRatBN7.2 Ensembl	15	69,340,645 - 70,237,538 (-)	Ensembl

RefSeq Acc Id:

NM_001191688 ⟹ NP_001178617

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,474 - 76,643,952 (-)	NCBI
mRatBN7.2	15	69,340,110 - 70,235,665 (-)	NCBI
Rnor_6.0	15	76,787,110 - 77,736,775 (-)	NCBI
Rnor_5.0	15	80,341,840 - 80,658,843 (-)	NCBI
Rnor_5.0	15	80,956,263 - 81,286,488 (-)	NCBI
Celera	15	68,728,387 - 69,614,167 (-)	NCBI

Sequence:

show sequence

CTTGCAATCCGTGCATCATTCCTCAGTGGGAACCTTTAAACTCTAAAATCCAAGGGAAGAAAAT
AAAGACATTATCATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGC
TGGATTCCGCAATAGCTCAAGAACTTATTTACACTATTAGAGAGGAATTGCCCGAAAATGTGCC
CATAGGAAATATACCAAAGGATCTGAATATTTCTCACATCAACGCTGCCACAGGGACGAGTGCC
AGCCTTGTCTACAGGCTGGTTTCTAAAGCTGGGGATGCCCCTCTGGTGAAAGTATCCAGTAGCA
CTGGGGAGATTTTCACAACCTCCAACAGAATAGACAGAGAGAAACTCTGTGCCGGAGCTTCTTA
TGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTGATCCTCCCCAATGACTTTTTCAGA
CTGATCAAAATCAAGATCATTGTCAAGGATACCAATGATAATGCCCCCATGTTTCCGTCTCCCG
TCATCAATATTTCCATCCCAGAGAACACTTTGATCAACAGTCGCTTTCCAATCCCATCAGCCAC
AGACCCTGACACGGGCTTCAATGGGGTACAGCATTATGAATTGCTGAATGGGCAGAGTGTTTTT
GGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTGGCCGCAATTGATCGTTCAGCAGAACT
TGGATAGAGAACAAAAAGATACCTATGTGATGAAAATCAAAGTGGAGGATGGGGGCACTCCACA
GAAATCCAGCACAGCCATACTCCAGGTCACAGTAAGTGATGTCAATGACAACAGGCCAGTGTTT
AAAGAGGGTCAAGTGGAAGTGCATATTCCAGAGAATGCTCCTGTAGGGACCTCTGTGATTCAGC
TCCATGCTACTGATGCAGACATAGGCAGCAATGCTGAAATCCGGTACATCTTTGGTGCCCAGGT
CGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAACACAACTGGGCTGATTACAGTTCAGAGG
TCCTTAGATAGGGAAGAGACAGCCATTCACAAAGTGACAGTGCTGGCTAGTGACGGCAGCTCCA
CTCCTGCCAGAGCCACCGTTACCATCAATGTCACAGATGTAAATGATAATCCTCCAAACATAGA
CCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTATCTCTCTGAGAAAGATCCAGTCAAT
ACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACGGATGTGAATGGCAAAGTGATCTGTT
TTATTGAAAGAGAGGTCCCATTTCATCTGAAGGCAGTGTATGACAACCAGTATCTGCTAGAGAC
CTCGTCTCTGCTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATCGTTGCCTCTGATTCT
GGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGTTAAGCTTGAGGACGAAAATGACAACC
CACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAAAACAACCGACGTGGGTTATA
CTTAACAACTATTAGTGCTACGGATGAAGACAGTGGGAAAAATGCAGACATTGTTTATCAGCTT
GGACCCAATGCCTCCTTCTTTGATCTGGACAGAAAGACAGGAGTTCTGACAGCCTCCAGAGTCT
TTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTAACTGCCAGGGACAACGGGACCCCTCC
CCTGCAGAGCCAAGCAGCCGTGATAGTTACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTC
ACTCATAATCATTTTCAGTTTTTTGTGTCTGAGAATCTGCCAAAGTATAGTACTGTGGGGGTAA
TCACAGTGACAGACGAGGACGCTGGAGAGAATAAAGCTGTGACTCTTTCCATTCTAAATGACAA
TGAAAATTTCGTGTTGGATCCCTATTCAGGAGTCATAAAGTCCAATGTCTCCTTTGATAGAGAA
CAGCAGAGTTCCTACACGTTTGATGTCAAAGCCACTGACGGAGGACAGCCACCTCGGTCCTCTA
CTGCAAAAGTAACTATCAATGTCATGGATGTCAATGACAATAGTCCAGTTGTCATTTCTCCACC
ATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGTTCCGTGGTTGCTGAAGTT
TTTGCTGTGGATATTGACACCGGGATGAATGCAGAACTTAAGTATACCATAGTGAGCGGGAACA
ACAAAGGATTATTTCGGATTGATCCAGTAACGGGCAATATCACCTTAGAAGAAAAGCCGGCACC
TACTGACGTGGGCCTGCACCGTCTCGTGGTCAACATAAGTGACCTGGGGTACCCTAAGGCTTTG
CACACTCTTGTGCTGGTATTTCTTTACGTGAACGACACTGCTGGAAACGCCTCGTATATATATG
ACTTGATCCGTAGGACTATGGAGACCCCGCTGGACAGGAACATAGGAGATAGTGGTCAACCTTA
TCAAAACGAGGACTATCTCACCATCATGATTGCCATCGTTGCCGGGGCCATGGTCGTCATCGTC
GTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGCGTCGAGGTTCAAGGCTGCTCAGAGGA
GCAAACAAGGTGCTGAATGGATGTCCCCAAACCAGGAGAATAAACAAAACAAGAAAAAGAAACG
GAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACTTTGTTACTATCGAAGAGTCCAAACCT
GATGATGCGGTTCATGAACCTATCAATGGGACCATAAGCCTGCCTGCTGAGCTGGAGGAACAGA
GTATAGGAAGATTTGACTGGGGCCCGGCCCCTCCAACAACCTTCAAGCCTAACAGCCCTGACCT
GGCCAAGCACTACAAATCTGCCTCTCCACAGCCTGCGTTTCATCTCAAACCAGACACTCCAGTT
TCCGTGAAAAAGCACCACGTCATTCAAGAGCTCCCTTTGGACAACACCTTTGTTGGGGGCTGCG
ACACCCTTTCCAAACGCTCCTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGCTCCCA
AGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGACAGTGTAACTCACACAGCAAAAATGAC
CTTATTCCTGTCACACATCAGAAATGCCCCAGCTCTACCGGTTTCCACATTCGAGAGAATGAAG
AAAGTCATTCTGAGTCTCAGCGTCGTGTTACCTTTCACCTTCCGGATGGCTCCCAGGAAAGCTG
CAGTGACAGTGGTCTGGGAGACCACGAGCCGGTGGGTAGTGGAACCCTGATCTCACACCCTCTT
CCTCTGGTTCAGCCACAGGACGAATTCTACGACCAGGCCTCTCCGGACAAGAGGACCGAAGCAG
ACGGCAACTCGGACCCCAATTCTGATGGACCTCTGGGTCCCCGAGGGTTAGCTGAAGCTACAGA
GATGTGCACTCAGGAGTGTCTTGTTTTGGGTCACTCTGATAATTGCTGGATGCCCCCTGGCTTG
GGTCCCTACCAACACCCTAAATCTCCTCTGTCAACCTTTGCACCCCAGAAAGAATGGATCAAGA
AAGACAAGCTCGTGAATGGCCACACCCTGACAAGAGCTTGGAAAGAAGATACCAACAGGAACCA
GTTCAATGACCGTAAGCAGTATGGCTCCAATGAAGGCCATTTCAGCAATGGCAGCCACATGGCA
GACATTCCTCTGGCAAATCTGAAGTCCTATAAGCAAGCAGGAGGCACGATTGAGAGTCCTAAGG
AGCACCAACTTTAAGACGAAGCTGTACGGGACCTAATAACTTTAATCTAAATAGACATGCTAAT
ACTGTGTGTTGGAGCTTTATGTATTCGATAGATCTTTACAGCTATGCCCCTTATAGTAGGGAAC
ACTCATAACTTTGTGTTAGCACGATGGAGAATACAATGCTTTGCAACATAAGGGAGGAAATAGA
CCTCCTAGCCATGCGATGACGTTCTTTACTAGAATTGATTAAACTCTCCAGAGATGTCTCCATT
GTGCAATTTATTTTTATTACTGCATTTTCTTTTGACCCTGGACTGCTGCTATGAACAATAGAAT
ATGCATTCGGAGAGTAAGAAAGTCCCACAGATTAGAGTGACTGACAAAACATATCCAGTTAGAA
ATTTGTGCTCTTTTTGTCTTTGATTTATGCTGGGACCTCTATACTTGACATTATACTTCAAACT
TTAAAAGATAAGCATTAAACCTATTGTGCTGTTAACACCGTTAGTGGACACTTGTAAGTCAATC
AGTGTTAAAGTATCTGTAAATAGAAGCAAGCTATTATTAACAACTTTTGTGTACTTAGAGCACT
CACCTAAAAATGTTGTAGCATAATTCTGTGTTGATGGTTGCTTCTTTCCTTTTTCGATTTCCCT
CTTTCTTCTTATTTCTGTTGTTTCTTTCAGTGAGGTGTTTCTGCGTTAGTAGTCTGTCTTGGCA
CACATTGTTCAAAGAATCTTAAACATTTGTGTTTTTAAACGGTTCTGAAATCTTGCTTCTTATA
TGATAACTTAGAATGTTAGAACTCTGTAAACCTATAAAGACAAAAGAAAATATGAAAACTTCAA
ACAACAAGAGTAGCAGACGTATACTTCTGCAAACTCTTGGAAATTCAGAACCTCTTTTTTTGAT
ATCCTTATTTTCAAAGTAGGCAAAATTAAAAACGACTTAATTAGTACCATTAAGTGAGAAAGTG
ATGGGAAAGTGTTATCCATCAAGTGTGATGTAATATTCTGTACTTGTTACTCTTTCAAAACTAA
TGTATTAAAATCAGCATATACTGAAGAAAAAATCATTACTCAAAAATAGTTTCAATTGGGCAAA
TGTGTGTCTTCAACTTTGTTGAAATGACAGAGTTTGTGTTGATCCTCATATACAATAATGTTGT
TGTAACACAAGTGTTATTAGACCATAGCCACAAAATATTTAATGTGTTGTGCCTTCATGATGTA
ACAGAACATTCTCCAGGTAGGTAGTTGGGGAAAATAAAGGGATAAATCTCTAATTATTGCTGTT
TAACTGTTTCTTATCATAGTTGGTCAATGCCTGGCAGGTACCAGCATTTTGTCACTTGGGTCAA
ACCAAGGGAGTGACAGATAATGTTAATAAGATCTCAGTTGCACGTGCAAACAAATCCAAATTTG
AACATTCTTAGGAGGTTTTTTGTTAAGGCATGACAGATGATTTAAACAAATAAATAGCATGCAA
CAAAATGTCTTTATTGAAAGGAGTGGAAGTTATATTAATGCCACGGTTCACCATCAATTTACAC
GTTAAAAAAAAAGAAAAAAGTTTAAAAAAATTGCTAATCTGATAGTTAATTTGTTCTTACCAAA
AATGAAGTTACTTTGTAAATAGCAGTTCACATTTTTCCACAGTATAATGGAAAATAATGGGTAG
GGGTGCATTGCTTATTGAAGTCATTTTTGTCGGTTTGTGAGGGGTGTTTGATGACTTTGACAAA
ATAAATATCTAAACAATTATCCTTGTTACAGCTTTGCAAGTTCTACGTTATTTACACTTATCAG
CTCTTGCAATAAATGTTCTGAATTACT

hide sequence

RefSeq Acc Id:

XM_008770867 ⟹ XP_008769089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,340,108 - 70,237,531 (-)	NCBI
Rnor_6.0	15	76,787,108 - 77,738,666 (-)	NCBI

Sequence:

show sequence

CCTCTGGGCTTATTGAGAGTTATATCAAGAAATTCAGTTCAGAGAGAGGAGAGAGAGGAGAGGG
AGAAGGAGAAGGGGGTAGAAGAGAAGGGAAAAGCGAAGAGTACGCGAGGTAGGAAGGAGAGCCT
CAGTCTCTGGAGCGCGAAAGAGCTCACGGATTAAGAATTTGCCGGGCAATTGGCACCCCGGGAA
AACATCCAGAAAATCACCATCACCCAACTCTGACGTTTCCTACCAGAAGTTAAAGACTTCAGCA
GTATTGCCATCGGATGCAAATGGTAGGCTGGATACTGTGGGATACACTCCCGAGCTGAAGTAGT
GCAATTGGATGTGGCGTGCGTTAAATACCAGAAGAGCCCAGACCCAGTGGGTAAAAGCGAGGAA
ATGTGGAGAGAATGACTAACGACAAATCTGTGAATTTGTTCTCGGGAGTTGCTAATTTGCCAGC
CCGAAGCCACACATTTTACAAGGAGGAAACGTTTTGCTGCTTCTGAATTCTCCCCAAACTGGTG
CTACCAGATGCATGGCTTTCTATGTGTTGGAACAAATCCTTCTTAACTGCAGCCTACTGGGAAA
GGGGCAAGGTTGAGGCAACTAACTGGCTGTCTCCACATAAGAGATGAGATGTAATGCCTCCTCC
TCCTCCGGTCCATGCACACTTCCTCTTGCAATCCGTGCATCATTCCTCAGTGGGAACCTTTAAA
CTCTAAAATCCAAGGGAAGAAAATAAAGACATTATCATGGACCTGAGGGATTTTTACCTGTTGG
CTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTATTTACACTATTAG
AGAGGAATTGCCCGAAAATGTGCCCATAGGAAATATACCAAAGGATCTGAATATTTCTCACATC
AACGCTGCCACAGGGACGAGTGCCAGCCTTGTCTACAGGCTGGTTTCTAAAGCTGGGGATGCCC
CTCTGGTGAAAGTATCCAGTAGCACTGGGGAGATTTTCACAACCTCCAACAGAATAGACAGAGA
GAAACTCTGTGCCGGAGCTTCTTATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTG
ATCCTCCCCAATGACTTTTTCAGACTGATCAAAATCAAGATCATTGTCAAGGATACCAATGATA
ATGCCCCCATGTTTCCGTCTCCCGTCATCAATATTTCCATCCCAGAGAACACTTTGATCAACAG
TCGCTTTCCAATCCCATCAGCCACAGACCCTGACACGGGCTTCAATGGGGTACAGCATTATGAA
TTGCTGAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTGGC
CGCAATTGATCGTTCAGCAGAACTTGGATAGAGAACAAAAAGATACCTATGTGATGAAAATCAA
AGTGGAGGATGGGGGCACTCCACAGAAATCCAGCACAGCCATACTCCAGGTCACAGTAAGTGAT
GTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAAGTGCATATTCCAGAGAATGCTC
CTGTAGGGACCTCTGTGATTCAGCTCCATGCTACTGATGCAGACATAGGCAGCAATGCTGAAAT
CCGGTACATCTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAACACA
ACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGGGAAGAGACAGCCATTCACAAAGTGACAG
TGCTGGCTAGTGACGGCAGCTCCACTCCTGCCAGAGCCACCGTTACCATCAATGTCACAGATGT
AAATGATAATCCTCCAAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTAT
CTCTCTGAGAAAGATCCAGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACGG
ATGTGAATGGCAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATCTGAAGGCAGTGTA
TGACAACCAGTATCTGCTAGAGACCTCGTCTCTGCTGGACTATGAGGGCACCAAAGAATTCAGC
TTTAAAATCGTTGCCTCTGATTCTGGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGTTA
AGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTC
TGAAAACAACCGACGTGGGTTATACTTAACAACTATTAGTGCTACGGATGAAGACAGTGGGAAA
AATGCAGACATTGTTTATCAGCTTGGACCCAATGCCTCCTTCTTTGATCTGGACAGAAAGACAG
GAGTTCTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTAAC
TGCCAGGGACAACGGGACCCCTCCCCTGCAGAGCCAAGCAGCCGTGATAGTTACTGTTCTGGAT
GAGAATGACAATAGCCCCAAGTTCACTCATAATCATTTTCAGTTTTTTGTGTCTGAGAATCTGC
CAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGACGAGGACGCTGGAGAGAATAAAGCTGT
GACTCTTTCCATTCTAAATGACAATGAAAATTTCGTGTTGGATCCCTATTCAGGAGTCATAAAG
TCCAATGTCTCCTTTGATAGAGAACAGCAGAGTTCCTACACGTTTGATGTCAAAGCCACTGACG
GAGGACAGCCACCTCGGTCCTCTACTGCAAAAGTAACTATCAATGTCATGGATGTCAATGACAA
TAGTCCAGTTGTCATTTCTCCACCATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCATT
CCTGGTTCCGTGGTTGCTGAAGTTTTTGCTGTGGATATTGACACCGGGATGAATGCAGAACTTA
AGTATACCATAGTGAGCGGGAACAACAAAGGATTATTTCGGATTGATCCAGTAACGGGCAATAT
CACCTTAGAAGAAAAGCCGGCACCTACTGACGTGGGCCTGCACCGTCTCGTGGTCAACATAAGT
GACCTGGGGTACCCTAAGGCTTTGCACACTCTTGTGCTGGTATTTCTTTACGTGAACGACACTG
CTGGAAACGCCTCGTATATATATGACTTGATCCGTAGGACTATGGAGACCCCGCTGGACAGGAA
CATAGGAGATAGTGGTCAACCTTATCAAAACGAGGACTATCTCACCATCATGATTGCCATCGTT
GCCGGGGCCATGGTCGTCATCGTCGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGCGT
CGAGGTTCAAGGCTGCTCAGAGGAGCAAACAAGGTGCTGAATGGATGTCCCCAAACCAGGAGAA
TAAACAAAACAAGAAAAAGAAACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACTTT
GTTACTATCGAAGAGTCCAAACCTGATGATGCGGTTCATGAACCTATCAATGGGACCATAAGCC
TGCCTGCTGAGCTGGAGGAACAGAGTATAGGAAGATTTGACTGGGGCCCGGCCCCTCCAACAAC
CTTCAAGCCTAACAGCCCTGACCTGGCCAAGCACTACAAATCTGCCTCTCCACAGCCTGCGTTT
CATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAGCACCACGTCATTCAAGAGCTCCCTTTGG
ACAACACCTTTGTTGGGGGCTGCGACACCCTTTCCAAACGCTCCTCCACTAGTTCAGATCACTT
CAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGACAG
CCACAGGACGAATTCTACGACCAGGCCTCTCCGGACAAGAGGACCGAAGCAGACGGCAACTCGG
ACCCCAATTCTGATGGACCTCTGGGTCCCCGAGGGTTAGCTGAAGCTACAGAGATGTGCACTCA
GGAGTGTCTTGTTTTGGGTCACTCTGATAATTGCTGGATGCCCCCTGGCTTGGGTCCCTACCAA
CACCCTAAATCTCCTCTGTCAACCTTTGCACCCCAGAAAGAATGGATCAAGAAAGACAAGCTCG
TGAATGGCCACACCCTGACAAGAGCTTGGAAAGAAGATACCAACAGGAACCAGTTCAATGACCG
TAAGCAGTATGGCTCCAATGAAGGCCATTTCAGCAATGGCAGCCACATGGCAGACATTCCTCTG
GCAAATCTGAAGTCCTATAAGCAAGCAGGAGGCACGATTGAGAGTCCTAAGGAGCACCAACTTT
AAGACGAAGCTGTACGGGACCTAATAACTTTAATCTAAATAGACATGCTAATACTGTGTGTTGG
AGCTTTATGTATTCGATAGATCTTTACAGCTATGCCCCTTATAGTAGGGAACACTCATAACTTT
GTGTTAGCACGATGGAGAATACAATGCTTTGCAACATAAGGGAGGAAATAGACCTCCTAGCCAT
GCGATGACGTTCTTTACTAGAATTGATTAAACTCTCCAGAGATGTCTCCATTGTGCAATTTATT
TTTATTACTGCATTTTCTTTTGACCCTGGACTGCTGCTATGAACAATAGAATATGCATTCGGAG
AGTAAGAAAGTCCCACAGATTAGAGTGACTGACAAAACATATCCAGTTAGAAATTTGTGCTCTT
TTTGTCTTTGATTTATGCTGGGACCTCTATACTTGACATTATACTTCAAACTTTAAAAGATAAG
CATTAAACCTATTGTGCTGTTAACACCGTTAGTGGACACTTGTAAGTCAATCAGTGTTAAAGTA
TCTGTAAATAGAAGCAAGCTATTATTAACAACTTTTGTGTACTTAGAGCACTCACCTAAAAATG
TTGTAGCATAATTCTGTGTTGATGGTTGCTTCTTTCCTTTTTCGATTTCCCTCTTTCTTCTTAT
TTCTGTTGTTTCTTTCAGTGAGGTGTTTCTGCGTTAGTAGTCTGTCTTGGCACACATTGTTCAA
AGAATCTTAAACATTTGTGTTTTTAAACGGTTCTGAAATCTTGCTTCTTATATGATAACTTAGA
ATGTTAGAACTCTGTAAACCTATAAAGACAAAAGAAAATATGAAAACTTCAAACAACAAGAGTA
GCAGACGTATACTTCTGCAAACTCTTGGAAATTCAGAACCTCTTTTTTTGATATCCTTATTTTC
AAAGTAGGCAAAATTAAAAACGACTTAATTAGTACCATTAAGTGAGAAAGTGATGGGAAAGTGT
TATCCATCAAGTGTGATGTAATATTCTGTACTTGTTACTCTTTCAAAACTAATGTATTAAAATC
AGCATATACTGAAGAAAAAATCATTACTCAAAAATAGTTTCAATTGGGCAAATGTGTGTCTTCA
ACTTTGTTGAAATGACAGAGTTTGTGTTGATCCTCATATACAATAATGTTGTTGTAACACAAGT
GTTATTAGACCATAGCCACAAAATATTTAATGTGTTGTGCCTTCATGATGTAACAGAACATTCT
CCAGGTAGGTAGTTGGGGAAAATAAAGGGATAAATCTCTAATTATTGCTGTTTAACTGTTTCTT
ATCATAGTTGGTCAATGCCTGGCAGGTACCAGCATTTTGTCACTTGGGTCAAACCAAGGGAGTG
ACAGATAATGTTAATAAGATCTCAGTTGCACGTGCAAACAAATCCAAATTTGAACATTCTTAGG
AGGTTTTTTGTTAAGGCATGACAGATGATTTAAACAAATAAATAGCATGCAACAAAATGTCTTT
ATTGAAAGGAGTGGAAGTTATATTAATGCCACGGTTCACCATCAATTTACACGTTAAAAAAAAA
GAAAAAAGTTTAAAAAAATTGCTAATCTGATAGTTAATTTGTTCTTACCAAAAATGAAGTTACT
TTGTAAATAGCAGTTCACATTTTTCCACAGTATAATGGAAAATAATGGGTAGGGGTGCATTGCT
TATTGAAGTCATTTTTGTCGGTTTGTGAGGGGTGTTTGATGACTTTGACAAAATAAATATCTAA
ACAATTATCCTTGTTACAGCTTTGCAAGTTCTACGTTATTTACACTTATCAGCTCTTGCAATAA
ATGTTCTGAATTACTCA

hide sequence

RefSeq Acc Id:

XM_017599710 ⟹ XP_017455199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,340,108 - 70,237,531 (-)	NCBI
Rnor_6.0	15	76,787,108 - 77,738,668 (-)	NCBI

Sequence:

show sequence

TCCCTCTGGGCTTATTGAGAGTTATATCAAGAAATTCAGTTCAGAGAGAGGAGAGAGAGGAGAG
GGAGAAGGAGAAGGGGGTAGAAGAGAAGGGAAAAGCGAAGAGTACGCGAGGTAGGAAGGAGAGC
CTCAGTCTCTGGAGCGCGAAAGAGCTCACGGATTAAGAATTTGCCGGGCAATTGGCACCCCGGG
AAAACATCCAGAAAATCACCATCACCCAACTCTGACGTTTCCTACCAGAAGTTAAAGACTTCAG
CAGTATTGCCATCGGATGCAAATGGTAGGCTGGATACTGTGGGATACACTCCCGAGCTGAAGTA
GTGCAATTGGATGTGGCGTGCGTTAAATACCAGAAGAGCCCAGACCCAGTGGGTAAAAGCGAGG
AAATGTGGAGAGAATGACTAACGACAAATCTGTGAATTTGTTCTCGGGAGTTGCTAATTTGCCA
GCCCGAAGCCACACATTTTACAAGGAGGAAACGTTTTGCTGCTTCTGAATTCTCCCCAAACTGG
TGCTACCAGATGCATGGCTTTCTATGTGTTGGAACAAATCCTTCTTAACTGCAGCCTACTGGGA
AAGGGGCAAGGTTGAGGCAACTAACTGGCTGTCTCCACATAAGAGATGAGATGTAATGCCTCCT
CCTCCTCCGGTCCATGCACACTTCCTCTTGCAATCCGTGCATCATTCCTCAGTGGGAACCTTTA
AACTCTAAAATCCAAGGGAAGAAAATAAAGACATTATCATGGACCTGAGGGATTTTTACCTGTT
GGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTATTTACACTATT
AGAGAGGAATTGCCCGAAAATGTGCCCATAGGAAATATACCAAAGGATCTGAATATTTCTCACA
TCAACGCTGCCACAGGGACGAGTGCCAGCCTTGTCTACAGGCTGGTTTCTAAAGCTGGGGATGC
CCCTCTGGTGAAAGTATCCAGTAGCACTGGGGAGATTTTCACAACCTCCAACAGAATAGACAGA
GAGAAACTCTGTGCCGGAGCTTCTTATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGG
TGATCCTCCCCAATGACTTTTTCAGACTGATCAAAATCAAGATCATTGTCAAGGATACCAATGA
TAATGCCCCCATGTTTCCGTCTCCCGTCATCAATATTTCCATCCCAGAGAACACTTTGATCAAC
AGTCGCTTTCCAATCCCATCAGCCACAGACCCTGACACGGGCTTCAATGGGGTACAGCATTATG
AATTGCTGAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTG
GCCGCAATTGATCGTTCAGCAGAACTTGGATAGAGAACAAAAAGATACCTATGTGATGAAAATC
AAAGTGGAGGATGGGGGCACTCCACAGAAATCCAGCACAGCCATACTCCAGGTCACAGTAAGTG
ATGTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAAGTGCATATTCCAGAGAATGC
TCCTGTAGGGACCTCTGTGATTCAGCTCCATGCTACTGATGCAGACATAGGCAGCAATGCTGAA
ATCCGGTACATCTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAACA
CAACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGGGAAGAGACAGCCATTCACAAAGTGAC
AGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCCAGAGCCACCGTTACCATCAATGTCACAGAT
GTAAATGATAATCCTCCAAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGT
ATCTCTCTGAGAAAGATCCAGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACAC
GGATGTGAATGGCAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATCTGAAGGCAGTG
TATGACAACCAGTATCTGCTAGAGACCTCGTCTCTGCTGGACTATGAGGGCACCAAAGAATTCA
GCTTTAAAATCGTTGCCTCTGATTCTGGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGT
TAAGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTT
TCTGAAAACAACCGACGTGGGTTATACTTAACAACTATTAGTGCTACGGATGAAGACAGTGGGA
AAAATGCAGACATTGTTTATCAGCTTGGACCCAATGCCTCCTTCTTTGATCTGGACAGAAAGAC
AGGAGTTCTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTA
ACTGCCAGGGACAACGGGACCCCTCCCCTGCAGAGCCAAGCAGCCGTGATAGTTACTGTTCTGG
ATGAGAATGACAATAGCCCCAAGTTCACTCATAATCATTTTCAGTTTTTTGTGTCTGAGAATCT
GCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGACGAGGACGCTGGAGAGAATAAAGCT
GTGACTCTTTCCATTCTAAATGACAATGAAAATTTCGTGTTGGATCCCTATTCAGGAGTCATAA
AGTCCAATGTCTCCTTTGATAGAGAACAGCAGAGTTCCTACACGTTTGATGTCAAAGCCACTGA
CGGAGGACAGCCACCTCGGTCCTCTACTGCAAAAGTAACTATCAATGTCATGGATGTCAATGAC
AATAGTCCAGTTGTCATTTCTCCACCATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCA
TTCCTGGTTCCGTGGTTGCTGAAGTTTTTGCTGTGGATATTGACACCGGGATGAATGCAGAACT
TAAGTATACCATAGTGAGCGGGAACAACAAAGGATTATTTCGGATTGATCCAGTAACGGGCAAT
ATCACCTTAGAAGAAAAGCCGGCACCTACTGACGTGGGCCTGCACCGTCTCGTGGTCAACATAA
GTGACCTGGGGTACCCTAAGGCTTTGCACACTCTTGTGCTGGTATTTCTTTACGTGAACGACAC
TGCTGGAAACGCCTCGTATATATATGACTTGATCCGTAGGACTATGGAGACCCCGCTGGACAGG
AACATAGGAGATAGTGGTCAACCTTATCAAAACGAGGACTATCTCACCATCATGATTGCCATCG
TTGCCGGGGCCATGGTCGTCATCGTCGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGC
GTCGAGGTTCAAGGCTGCTCAGAGGAGCAAACAAGGTGCTGAATGGATGTCCCCAAACCAGGAG
AATAAACAAAACAAGAAAAAGAAACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACT
TTGTTACTATCGAAGAGTCCAAACCTGATGATGCGGTTCATGAACCTATCAATGGGACCATAAG
CCTGCCTGCTGAGCTGGAGGAACAGAGTATAGGAAGATTTGACTGGGGCCCGGCCCCTCCAACA
ACCTTCAAGCCTAACAGCCCTGACCTGGCCAAGCACTACAAATCTGCCTCTCCACAGCCTGCGT
TTCATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAGCACCACGTCATTCAAGAGCTCCCTTT
GGACAACACCTTTGTTGGGGGCTGCGACACCCTTTCCAAACGCTCCTCCACTAGTTCAGATCAC
TTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGAC
AGTGTAACTCACACAGCAAAAATGACCTTATTCCTGTCACACATCAGAAATGCCCCAGCTCTAC
CGGTTTCCACATTCGAGAGAATGAAGAAAGTCATTCTGAGTCTCAGCGTCGTGTTACCTTTCAC
CTTCCGGATGGCTCCCAGGAAAGCTGCAGTGACAGTGGTCTGGGAGACCACGAGCCGGTGGGTA
GTGGAACCCTGATCTCACACCCTCTTCCTCTGGTTCAGCCACAGGACGAATTCTACGACCAGGC
CTCTCCGGACAAGAGGACCGAAGCAGACGGCAACTCGGACCCCAATTCTGATGGACCTCTGGGT
CCCCGAGGGTTAGCTGAAGCTACAGAGATGTGCACTCAGGAGTGTCTTGTTTTGGGTCACTCTG
ATAATTGCTGGATGCCCCCTGGCTTGGGTCCCTACCAACACCCTAAATCTCCTCTGTCAACCTT
TGCACCCCAGAAAGAATGGATCAAGAAAGACAAGCTCGTGAATGGCCACACCCTGACAAGAGCT
TGGAAAGAAGATACCAACAGGAACCAGTTCAATGACCGTAAGCAGTATGGCTCCAATGAAGGCC
ATTTCAGCAATGGCAGCCACATGGCAGACATTCCTCTGGCAAATCTGAAGTCCTATAAGCAAGC
AGGAGGCACGATTGAGAGTCCTAAGGAGCACCAACTTTAAGACGAAGCTGTACGGGACCTAATA
ACTTTAATCTAAATAGACATGCTAATACTGTGTGTTGGAGCTTTATGTATTCGATAGATCTTTA
CAGCTATGCCCCTTATAGTAGGGAACACTCATAACTTTGTGTTAGCACGATGGAGAATACAATG
CTTTGCAACATAAGGGAGGAAATAGACCTCCTAGCCATGCGATGACGTTCTTTACTAGAATTGA
TTAAACTCTCCAGAGATGTCTCCATTGTGCAATTTATTTTTATTACTGCATTTTCTTTTGACCC
TGGACTGCTGCTATGAACAATAGAATATGCATTCGGAGAGTAAGAAAGTCCCACAGATTAGAGT
GACTGACAAAACATATCCAGTTAGAAATTTGTGCTCTTTTTGTCTTTGATTTATGCTGGGACCT
CTATACTTGACATTATACTTCAAACTTTAAAAGATAAGCATTAAACCTATTGTGCTGTTAACAC
CGTTAGTGGACACTTGTAAGTCAATCAGTGTTAAAGTATCTGTAAATAGAAGCAAGCTATTATT
AACAACTTTTGTGTACTTAGAGCACTCACCTAAAAATGTTGTAGCATAATTCTGTGTTGATGGT
TGCTTCTTTCCTTTTTCGATTTCCCTCTTTCTTCTTATTTCTGTTGTTTCTTTCAGTGAGGTGT
TTCTGCGTTAGTAGTCTGTCTTGGCACACATTGTTCAAAGAATCTTAAACATTTGTGTTTTTAA
ACGGTTCTGAAATCTTGCTTCTTATATGATAACTTAGAATGTTAGAACTCTGTAAACCTATAAA
GACAAAAGAAAATATGAAAACTTCAAACAACAAGAGTAGCAGACGTATACTTCTGCAAACTCTT
GGAAATTCAGAACCTCTTTTTTTGATATCCTTATTTTCAAAGTAGGCAAAATTAAAAACGACTT
AATTAGTACCATTAAGTGAGAAAGTGATGGGAAAGTGTTATCCATCAAGTGTGATGTAATATTC
TGTACTTGTTACTCTTTCAAAACTAATGTATTAAAATCAGCATATACTGAAGAAAAAATCATTA
CTCAAAAATAGTTTCAATTGGGCAAATGTGTGTCTTCAACTTTGTTGAAATGACAGAGTTTGTG
TTGATCCTCATATACAATAATGTTGTTGTAACACAAGTGTTATTAGACCATAGCCACAAAATAT
TTAATGTGTTGTGCCTTCATGATGTAACAGAACATTCTCCAGGTAGGTAGTTGGGGAAAATAAA
GGGATAAATCTCTAATTATTGCTGTTTAACTGTTTCTTATCATAGTTGGTCAATGCCTGGCAGG
TACCAGCATTTTGTCACTTGGGTCAAACCAAGGGAGTGACAGATAATGTTAATAAGATCTCAGT
TGCACGTGCAAACAAATCCAAATTTGAACATTCTTAGGAGGTTTTTTGTTAAGGCATGACAGAT
GATTTAAACAAATAAATAGCATGCAACAAAATGTCTTTATTGAAAGGAGTGGAAGTTATATTAA
TGCCACGGTTCACCATCAATTTACACGTTAAAAAAAAAGAAAAAAGTTTAAAAAAATTGCTAAT
CTGATAGTTAATTTGTTCTTACCAAAAATGAAGTTACTTTGTAAATAGCAGTTCACATTTTTCC
ACAGTATAATGGAAAATAATGGGTAGGGGTGCATTGCTTATTGAAGTCATTTTTGTCGGTTTGT
GAGGGGTGTTTGATGACTTTGACAAAATAAATATCTAAACAATTATCCTTGTTACAGCTTTGCA
AGTTCTACGTTATTTACACTTATCAGCTCTTGCAATAAATGTTCTGAATTACTCA

hide sequence

RefSeq Acc Id:

XM_017599711 ⟹ XP_017455200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,340,108 - 70,237,531 (-)	NCBI
Rnor_6.0	15	76,787,108 - 77,738,667 (-)	NCBI

Sequence:

show sequence

CCCTCTGGGCTTATTGAGAGTTATATCAAGAAATTCAGTTCAGAGAGAGGAGAGAGAGGAGAGG
GAGAAGGAGAAGGGGGTAGAAGAGAAGGGAAAAGCGAAGAGTACGCGAGGTAGGAAGGAGAGCC
TCAGTCTCTGGAGCGCGAAAGAGCTCACGGATTAAGAATTTGCCGGGCAATTGGCACCCCGGGA
AAACATCCAGAAAATCACCATCACCCAACTCTGACGTTTCCTACCAGAAGTTAAAGACTTCAGC
AGTATTGCCATCGGATGCAAATGGTAGGCTGGATACTGTGGGATACACTCCCGAGCTGAAGTAG
TGCAATTGGATGTGGCGTGCGTTAAATACCAGAAGAGCCCAGACCCAGTGGGTAAAAGCGAGGA
AATGTGGAGAGAATGACTAACGACAAATCTGTGAATTTGTTCTCGGGAGTTGCTAATTTGCCAG
CCCGAAGCCACACATTTTACAAGGAGGAAACGTTTTGCTGCTTCTGAATTCTCCCCAAACTGGT
GCTACCAGATGCATGGCTTTCTATGTGTTGGAACAAATCCTTCTTAACTGCAGCCTACTGGGAA
AGGGGCAAGGTTGAGGCAACTAACTGGCTGTCTCCACATAAGAGATGAGATGTAATGCCTCCTC
CTCCTCCGGTCCATGCACACTTCCTCTTGCAATCCGTGCATCATTCCTCAGTGGGAACCTTTAA
ACTCTAAAATCCAAGGGAAGAAAATAAAGACATTATCATGGACCTGAGGGATTTTTACCTGTTG
GCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTATTTACACTATTA
GAGAGGAATTGCCCGAAAATGTGCCCATAGGAAATATACCAAAGGATCTGAATATTTCTCACAT
CAACGCTGCCACAGGGACGAGTGCCAGCCTTGTCTACAGGCTGGTTTCTAAAGCTGGGGATGCC
CCTCTGGTGAAAGTATCCAGTAGCACTGGGGAGATTTTCACAACCTCCAACAGAATAGACAGAG
AGAAACTCTGTGCCGGAGCTTCTTATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGT
GATCCTCCCCAATGACTTTTTCAGACTGATCAAAATCAAGATCATTGTCAAGGATACCAATGAT
AATGCCCCCATGTTTCCGTCTCCCGTCATCAATATTTCCATCCCAGAGAACACTTTGATCAACA
GTCGCTTTCCAATCCCATCAGCCACAGACCCTGACACGGGCTTCAATGGGGTACAGCATTATGA
ATTGCTGAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTGG
CCGCAATTGATCGTTCAGCAGAACTTGGATAGAGAACAAAAAGATACCTATGTGATGAAAATCA
AAGTGGAGGATGGGGGCACTCCACAGAAATCCAGCACAGCCATACTCCAGGTCACAGTAAGTGA
TGTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAAGTGCATATTCCAGAGAATGCT
CCTGTAGGGACCTCTGTGATTCAGCTCCATGCTACTGATGCAGACATAGGCAGCAATGCTGAAA
TCCGGTACATCTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAACAC
AACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGGGAAGAGACAGCCATTCACAAAGTGACA
GTGCTGGCTAGTGACGGCAGCTCCACTCCTGCCAGAGCCACCGTTACCATCAATGTCACAGATG
TAAATGATAATCCTCCAAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTA
TCTCTCTGAGAAAGATCCAGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACG
GATGTGAATGGCAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATCTGAAGGCAGTGT
ATGACAACCAGTATCTGCTAGAGACCTCGTCTCTGCTGGACTATGAGGGCACCAAAGAATTCAG
CTTTAAAATCGTTGCCTCTGATTCTGGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGTT
AAGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTT
CTGAAAACAACCGACGTGGGTTATACTTAACAACTATTAGTGCTACGGATGAAGACAGTGGGAA
AAATGCAGACATTGTTTATCAGCTTGGACCCAATGCCTCCTTCTTTGATCTGGACAGAAAGACA
GGAGTTCTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTAA
CTGCCAGGGACAACGGGACCCCTCCCCTGCAGAGCCAAGCAGCCGTGATAGTTACTGTTCTGGA
TGAGAATGACAATAGCCCCAAGTTCACTCATAATCATTTTCAGTTTTTTGTGTCTGAGAATCTG
CCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGACGAGGACGCTGGAGAGAATAAAGCTG
TGACTCTTTCCATTCTAAATGACAATGAAAATTTCGTGTTGGATCCCTATTCAGGAGTCATAAA
GTCCAATGTCTCCTTTGATAGAGAACAGCAGAGTTCCTACACGTTTGATGTCAAAGCCACTGAC
GGAGGACAGCCACCTCGGTCCTCTACTGCAAAAGTAACTATCAATGTCATGGATGTCAATGACA
ATAGTCCAGTTGTCATTTCTCCACCATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCAT
TCCTGGTTCCGTGGTTGCTGAAGTTTTTGCTGTGGATATTGACACCGGGATGAATGCAGAACTT
AAGTATACCATAGTGAGCGGGAACAACAAAGGATTATTTCGGATTGATCCAGTAACGGGCAATA
TCACCTTAGAAGAAAAGCCGGCACCTACTGACGTGGGCCTGCACCGTCTCGTGGTCAACATAAG
TGACCTGGGGTACCCTAAGGCTTTGCACACTCTTGTGCTGGTATTTCTTTACGTGAACGACACT
GCTGGAAACGCCTCGTATATATATGACTTGATCCGTAGGACTATGGAGACCCCGCTGGACAGGA
ACATAGGAGATAGTGGTCAACCTTATCAAAACGAGGACTATCTCACCATCATGATTGCCATCGT
TGCCGGGGCCATGGTCGTCATCGTCGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGCG
TCGAGGTTCAAGGCTGCTCAGAGGAGCAAACAAGGTGCTGAATGGATGTCCCCAAACCAGGAGA
ATAAACAAAACAAGAAAAAGAAACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACTT
TGTTACTATCGAAGAGTCCAAACCTGATGATGCGGTTCATGAACCTATCAATGGGACCATAAGC
CTGCCTGCTGAGCTGGAGGAACAGAGTATAGGAAGATTTGACTGGGGCCCGGCCCCTCCAACAA
CCTTCAAGCCTAACAGCCCTGACCTGGCCAAGCACTACAAATCTGCCTCTCCACAGCCTGCGTT
TCATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAGCACCACGTCATTCAAGAGCTCCCTTTG
GACAACACCTTTGTTGGGGGCTGCGACACCCTTTCCAAACGCTCCTCCACTAGTTCAGATCACT
TCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGACA
GTCTCAGCGTCGTGTTACCTTTCACCTTCCGGATGGCTCCCAGGAAAGCTGCAGTGACAGTGGT
CTGGGAGACCACGAGCCGGTGGGTAGTGGAACCCTGATCTCACACCCTCTTCCTCTGGTTCAGC
CACAGGACGAATTCTACGACCAGGCCTCTCCGGACAAGAGGACCGAAGCAGACGGCAACTCGGA
CCCCAATTCTGATGGACCTCTGGGTCCCCGAGGGTTAGCTGAAGCTACAGAGATGTGCACTCAG
GAGTGTCTTGTTTTGGGTCACTCTGATAATTGCTGGATGCCCCCTGGCTTGGGTCCCTACCAAC
ACCCTAAATCTCCTCTGTCAACCTTTGCACCCCAGAAAGAATGGATCAAGAAAGACAAGCTCGT
GAATGGCCACACCCTGACAAGAGCTTGGAAAGAAGATACCAACAGGAACCAGTTCAATGACCGT
AAGCAGTATGGCTCCAATGAAGGCCATTTCAGCAATGGCAGCCACATGGCAGACATTCCTCTGG
CAAATCTGAAGTCCTATAAGCAAGCAGGAGGCACGATTGAGAGTCCTAAGGAGCACCAACTTTA
AGACGAAGCTGTACGGGACCTAATAACTTTAATCTAAATAGACATGCTAATACTGTGTGTTGGA
GCTTTATGTATTCGATAGATCTTTACAGCTATGCCCCTTATAGTAGGGAACACTCATAACTTTG
TGTTAGCACGATGGAGAATACAATGCTTTGCAACATAAGGGAGGAAATAGACCTCCTAGCCATG
CGATGACGTTCTTTACTAGAATTGATTAAACTCTCCAGAGATGTCTCCATTGTGCAATTTATTT
TTATTACTGCATTTTCTTTTGACCCTGGACTGCTGCTATGAACAATAGAATATGCATTCGGAGA
GTAAGAAAGTCCCACAGATTAGAGTGACTGACAAAACATATCCAGTTAGAAATTTGTGCTCTTT
TTGTCTTTGATTTATGCTGGGACCTCTATACTTGACATTATACTTCAAACTTTAAAAGATAAGC
ATTAAACCTATTGTGCTGTTAACACCGTTAGTGGACACTTGTAAGTCAATCAGTGTTAAAGTAT
CTGTAAATAGAAGCAAGCTATTATTAACAACTTTTGTGTACTTAGAGCACTCACCTAAAAATGT
TGTAGCATAATTCTGTGTTGATGGTTGCTTCTTTCCTTTTTCGATTTCCCTCTTTCTTCTTATT
TCTGTTGTTTCTTTCAGTGAGGTGTTTCTGCGTTAGTAGTCTGTCTTGGCACACATTGTTCAAA
GAATCTTAAACATTTGTGTTTTTAAACGGTTCTGAAATCTTGCTTCTTATATGATAACTTAGAA
TGTTAGAACTCTGTAAACCTATAAAGACAAAAGAAAATATGAAAACTTCAAACAACAAGAGTAG
CAGACGTATACTTCTGCAAACTCTTGGAAATTCAGAACCTCTTTTTTTGATATCCTTATTTTCA
AAGTAGGCAAAATTAAAAACGACTTAATTAGTACCATTAAGTGAGAAAGTGATGGGAAAGTGTT
ATCCATCAAGTGTGATGTAATATTCTGTACTTGTTACTCTTTCAAAACTAATGTATTAAAATCA
GCATATACTGAAGAAAAAATCATTACTCAAAAATAGTTTCAATTGGGCAAATGTGTGTCTTCAA
CTTTGTTGAAATGACAGAGTTTGTGTTGATCCTCATATACAATAATGTTGTTGTAACACAAGTG
TTATTAGACCATAGCCACAAAATATTTAATGTGTTGTGCCTTCATGATGTAACAGAACATTCTC
CAGGTAGGTAGTTGGGGAAAATAAAGGGATAAATCTCTAATTATTGCTGTTTAACTGTTTCTTA
TCATAGTTGGTCAATGCCTGGCAGGTACCAGCATTTTGTCACTTGGGTCAAACCAAGGGAGTGA
CAGATAATGTTAATAAGATCTCAGTTGCACGTGCAAACAAATCCAAATTTGAACATTCTTAGGA
GGTTTTTTGTTAAGGCATGACAGATGATTTAAACAAATAAATAGCATGCAACAAAATGTCTTTA
TTGAAAGGAGTGGAAGTTATATTAATGCCACGGTTCACCATCAATTTACACGTTAAAAAAAAAG
AAAAAAGTTTAAAAAAATTGCTAATCTGATAGTTAATTTGTTCTTACCAAAAATGAAGTTACTT
TGTAAATAGCAGTTCACATTTTTCCACAGTATAATGGAAAATAATGGGTAGGGGTGCATTGCTT
ATTGAAGTCATTTTTGTCGGTTTGTGAGGGGTGTTTGATGACTTTGACAAAATAAATATCTAAA
CAATTATCCTTGTTACAGCTTTGCAAGTTCTACGTTATTTACACTTATCAGCTCTTGCAATAAA
TGTTCTGAATTACTCA

hide sequence

RefSeq Acc Id:

XM_017599712 ⟹ XP_017455201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,340,108 - 70,237,531 (-)	NCBI
Rnor_6.0	15	76,787,108 - 77,738,667 (-)	NCBI

Sequence:

show sequence

CCCTCTGGGCTTATTGAGAGTTATATCAAGAAATTCAGTTCAGAGAGAGGAGAGAGAGGAGAGG
GAGAAGGAGAAGGGGGTAGAAGAGAAGGGAAAAGCGAAGAGTACGCGAGGTAGGAAGGAGAGCC
TCAGTCTCTGGAGCGCGAAAGAGCTCACGGATTAAGAATTTGCCGGGCAATTGGCACCCCGGGA
AAACATCCAGAAAATCACCATCACCCAACTCTGACGTTTCCTACCAGAAGTTAAAGACTTCAGC
AGTATTGCCATCGGATGCAAATGGTAGGCTGGATACTGTGGGATACACTCCCGAGCTGAAGTAG
TGCAATTGGATGTGGCGTGCGTTAAATACCAGAAGAGCCCAGACCCAGTGGGTAAAAGCGAGGA
AATGTGGAGAGAATGACTAACGACAAATCTGTGAATTTGTTCTCGGGAGTTGCTAATTTGCCAG
CCCGAAGCCACACATTTTACAAGGAGGAAACGTTTTGCTGCTTCTGAATTCTCCCCAAACTGGT
GCTACCAGATGCATGGCTTTCTATGTGTTGGAACAAATCCTTCTTAACTGCAGCCTACTGGGAA
AGGGGCAAGGTTGAGGCAACTAACTGGCTGTCTCCACATAAGAGATGAGATGTAATGCCTCCTC
CTCCTCCGGTCCATGCACACTTCCTCTTGCAATCCGTGCATCATTCCTCAGTGGGAACCTTTAA
ACTCTAAAATCCAAGGGAAGAAAATAAAGACATTATCATGGACCTGAGGGATTTTTACCTGTTG
GCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTATTTACACTATTA
GAGAGGAATTGCCCGAAAATGTGCCCATAGGAAATATACCAAAGGATCTGAATATTTCTCACAT
CAACGCTGCCACAGGGACGAGTGCCAGCCTTGTCTACAGGCTGGTTTCTAAAGCTGGGGATGCC
CCTCTGGTGAAAGTATCCAGTAGCACTGGGGAGATTTTCACAACCTCCAACAGAATAGACAGAG
AGAAACTCTGTGCCGGAGCTTCTTATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGT
GATCCTCCCCAATGACTTTTTCAGACTGATCAAAATCAAGATCATTGTCAAGGATACCAATGAT
AATGCCCCCATGTTTCCGTCTCCCGTCATCAATATTTCCATCCCAGAGAACACTTTGATCAACA
GTCGCTTTCCAATCCCATCAGCCACAGACCCTGACACGGGCTTCAATGGGGTACAGCATTATGA
ATTGCTGAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTGG
CCGCAATTGATCGTTCAGCAGAACTTGGATAGAGAACAAAAAGATACCTATGTGATGAAAATCA
AAGTGGAGGATGGGGGCACTCCACAGAAATCCAGCACAGCCATACTCCAGGTCACAGTAAGTGA
TGTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAAGTGCATATTCCAGAGAATGCT
CCTGTAGGGACCTCTGTGATTCAGCTCCATGCTACTGATGCAGACATAGGCAGCAATGCTGAAA
TCCGGTACATCTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAACAC
AACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGGGAAGAGACAGCCATTCACAAAGTGACA
GTGCTGGCTAGTGACGGCAGCTCCACTCCTGCCAGAGCCACCGTTACCATCAATGTCACAGATG
TAAATGATAATCCTCCAAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTA
TCTCTCTGAGAAAGATCCAGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACG
GATGTGAATGGCAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATCTGAAGGCAGTGT
ATGACAACCAGTATCTGCTAGAGACCTCGTCTCTGCTGGACTATGAGGGCACCAAAGAATTCAG
CTTTAAAATCGTTGCCTCTGATTCTGGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGTT
AAGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTT
CTGAAAACAACCGACGTGGGTTATACTTAACAACTATTAGTGCTACGGATGAAGACAGTGGGAA
AAATGCAGACATTGTTTATCAGCTTGGACCCAATGCCTCCTTCTTTGATCTGGACAGAAAGACA
GGAGTTCTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTAA
CTGCCAGGGACAACGGGACCCCTCCCCTGCAGAGCCAAGCAGCCGTGATAGTTACTGTTCTGGA
TGAGAATGACAATAGCCCCAAGTTCACTCATAATCATTTTCAGTTTTTTGTGTCTGAGAATCTG
CCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGACGAGGACGCTGGAGAGAATAAAGCTG
TGACTCTTTCCATTCTAAATGACAATGAAAATTTCGTGTTGGATCCCTATTCAGGAGTCATAAA
GTCCAATGTCTCCTTTGATAGAGAACAGCAGAGTTCCTACACGTTTGATGTCAAAGCCACTGAC
GGAGGACAGCCACCTCGGTCCTCTACTGCAAAAGTAACTATCAATGTCATGGATGTCAATGACA
ATAGTCCAGTTGTCATTTCTCCACCATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCAT
TCCTGGTTCCGTGGTTGCTGAAGTTTTTGCTGTGGATATTGACACCGGGATGAATGCAGAACTT
AAGTATACCATAGTGAGCGGGAACAACAAAGGATTATTTCGGATTGATCCAGTAACGGGCAATA
TCACCTTAGAAGAAAAGCCGGCACCTACTGACGTGGGCCTGCACCGTCTCGTGGTCAACATAAG
TGACCTGGGGTACCCTAAGGCTTTGCACACTCTTGTGCTGGTATTTCTTTACGTGAACGACACT
GCTGGAAACGCCTCGTATATATATGACTTGATCCGTAGGACTATGGAGACCCCGCTGGACAGGA
ACATAGGAGATAGTGGTCAACCTTATCAAAACGAGGACTATCTCACCATCATGATTGCCATCGT
TGCCGGGGCCATGGTCGTCATCGTCGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGCG
TCGAGGTTCAAGGCTGCTCAGAGGAGCAAACAAGGTGCTGAATGGATGTCCCCAAACCAGGAGA
ATAAACAAAACAAGAAAAAGAAACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACTT
TGTTACTATCGAAGAGTCCAAACCTGATGATGCGGTTCATGAACCTATCAATGGGACCATAAGC
CTGCCTGCTGAGCTGGAGGAACAGAGTATAGGAAGATTTGACTGGGGCCCGGCCCCTCCAACAA
CCTTCAAGCCTAACAGCCCTGACCTGGCCAAGCACTACAAATCTGCCTCTCCACAGCCTGCGTT
TCATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAGCACCACGTCATTCAAGAGCTCCCTTTG
GACAACACCTTTGTTGGGGGCTGCGACACCCTTTCCAAACGCTCCTCCACTAGTTCAGATCACT
TCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGACA
GTGTAACTCACACAGCAAAAATGACCTTATTCCTGTCACACATCAGAAATGCCCCAGCTCTACC
GGTTTCCACATTCGAGAGAATGAAGAAAGTCATTCTGAGCCACAGGACGAATTCTACGACCAGG
CCTCTCCGGACAAGAGGACCGAAGCAGACGGCAACTCGGACCCCAATTCTGATGGACCTCTGGG
TCCCCGAGGGTTAGCTGAAGCTACAGAGATGTGCACTCAGGAGTGTCTTGTTTTGGGTCACTCT
GATAATTGCTGGATGCCCCCTGGCTTGGGTCCCTACCAACACCCTAAATCTCCTCTGTCAACCT
TTGCACCCCAGAAAGAATGGATCAAGAAAGACAAGCTCGTGAATGGCCACACCCTGACAAGAGC
TTGGAAAGAAGATACCAACAGGAACCAGTTCAATGACCGTAAGCAGTATGGCTCCAATGAAGGC
CATTTCAGCAATGGCAGCCACATGGCAGACATTCCTCTGGCAAATCTGAAGTCCTATAAGCAAG
CAGGAGGCACGATTGAGAGTCCTAAGGAGCACCAACTTTAAGACGAAGCTGTACGGGACCTAAT
AACTTTAATCTAAATAGACATGCTAATACTGTGTGTTGGAGCTTTATGTATTCGATAGATCTTT
ACAGCTATGCCCCTTATAGTAGGGAACACTCATAACTTTGTGTTAGCACGATGGAGAATACAAT
GCTTTGCAACATAAGGGAGGAAATAGACCTCCTAGCCATGCGATGACGTTCTTTACTAGAATTG
ATTAAACTCTCCAGAGATGTCTCCATTGTGCAATTTATTTTTATTACTGCATTTTCTTTTGACC
CTGGACTGCTGCTATGAACAATAGAATATGCATTCGGAGAGTAAGAAAGTCCCACAGATTAGAG
TGACTGACAAAACATATCCAGTTAGAAATTTGTGCTCTTTTTGTCTTTGATTTATGCTGGGACC
TCTATACTTGACATTATACTTCAAACTTTAAAAGATAAGCATTAAACCTATTGTGCTGTTAACA
CCGTTAGTGGACACTTGTAAGTCAATCAGTGTTAAAGTATCTGTAAATAGAAGCAAGCTATTAT
TAACAACTTTTGTGTACTTAGAGCACTCACCTAAAAATGTTGTAGCATAATTCTGTGTTGATGG
TTGCTTCTTTCCTTTTTCGATTTCCCTCTTTCTTCTTATTTCTGTTGTTTCTTTCAGTGAGGTG
TTTCTGCGTTAGTAGTCTGTCTTGGCACACATTGTTCAAAGAATCTTAAACATTTGTGTTTTTA
AACGGTTCTGAAATCTTGCTTCTTATATGATAACTTAGAATGTTAGAACTCTGTAAACCTATAA
AGACAAAAGAAAATATGAAAACTTCAAACAACAAGAGTAGCAGACGTATACTTCTGCAAACTCT
TGGAAATTCAGAACCTCTTTTTTTGATATCCTTATTTTCAAAGTAGGCAAAATTAAAAACGACT
TAATTAGTACCATTAAGTGAGAAAGTGATGGGAAAGTGTTATCCATCAAGTGTGATGTAATATT
CTGTACTTGTTACTCTTTCAAAACTAATGTATTAAAATCAGCATATACTGAAGAAAAAATCATT
ACTCAAAAATAGTTTCAATTGGGCAAATGTGTGTCTTCAACTTTGTTGAAATGACAGAGTTTGT
GTTGATCCTCATATACAATAATGTTGTTGTAACACAAGTGTTATTAGACCATAGCCACAAAATA
TTTAATGTGTTGTGCCTTCATGATGTAACAGAACATTCTCCAGGTAGGTAGTTGGGGAAAATAA
AGGGATAAATCTCTAATTATTGCTGTTTAACTGTTTCTTATCATAGTTGGTCAATGCCTGGCAG
GTACCAGCATTTTGTCACTTGGGTCAAACCAAGGGAGTGACAGATAATGTTAATAAGATCTCAG
TTGCACGTGCAAACAAATCCAAATTTGAACATTCTTAGGAGGTTTTTTGTTAAGGCATGACAGA
TGATTTAAACAAATAAATAGCATGCAACAAAATGTCTTTATTGAAAGGAGTGGAAGTTATATTA
ATGCCACGGTTCACCATCAATTTACACGTTAAAAAAAAAGAAAAAAGTTTAAAAAAATTGCTAA
TCTGATAGTTAATTTGTTCTTACCAAAAATGAAGTTACTTTGTAAATAGCAGTTCACATTTTTC
CACAGTATAATGGAAAATAATGGGTAGGGGTGCATTGCTTATTGAAGTCATTTTTGTCGGTTTG
TGAGGGGTGTTTGATGACTTTGACAAAATAAATATCTAAACAATTATCCTTGTTACAGCTTTGC
AAGTTCTACGTTATTTACACTTATCAGCTCTTGCAATAAATGTTCTGAATTACTCA

hide sequence

RefSeq Acc Id:

XM_017599713 ⟹ XP_017455202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,750,522 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,559,030 - 70,237,531 (-)	NCBI
Rnor_6.0	15	77,004,358 - 77,738,668 (-)	NCBI

Sequence:

show sequence

TCCCTCTGGGCTTATTGAGAGTTATATCAAGAAATTCAGTTCAGAGAGAGGAGAGAGAGGAGAG
GGAGAAGGAGAAGGGGGTAGAAGAGAAGGGAAAAGCGAAGAGTACGCGAGGTAGGAAGGAGAGC
CTCAGTCTCTGGAGCGCGAAAGAGCTCACGGATTAAGAATTTGCCGGGCAATTGGCACCCCGGG
AAAACATCCAGAAAATCACCATCACCCAACTCTGACGTTTCCTACCAGAAGTTAAAGACTTCAG
CAGTATTGCCATCGGATGCAAATGGTAGGCTGGATACTGTGGGATACACTCCCGAGCTGAAGTA
GTGCAATTGGATGTGGCGTGCGTTAAATACCAGAAGAGCCCAGACCCAGTGGGTAAAAGCGAGG
AAATGTGGAGAGAATGACTAACGACAAATCTGTGAATTTGTTCTCGGGAGTTGCTAATTTGCCA
GCCCGAAGCCACACATTTTACAAGGAGGAAACGTTTTGCTGCTTCTGAATTCTCCCCAAACTGG
TGCTACCAGATGCATGGCTTTCTATGTGTTGGAACAAATCCTTCTTAACTGCAGCCTACTGGGA
AAGGGGCAAGGTTGAGGCAACTAACTGGCTGTCTCCACATAAGAGATGAGATGTAATGCCTCCT
CCTCCTCCGGTCCATGCACACTTCCTCTTGCAATCCGTGCATCATTCCTCAGTGGGAACCTTTA
AACTCTAAAATCCAAGGGAAGAAAATAAAGACATTATCATGGACCTGAGGGATTTTTACCTGTT
GGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTATTTACACTATT
AGAGAGGAATTGCCCGAAAATGTGCCCATAGGAAATATACCAAAGGATCTGAATATTTCTCACA
TCAACGCTGCCACAGGGACGAGTGCCAGCCTTGTCTACAGGCTGGTTTCTAAAGCTGGGGATGC
CCCTCTGGTGAAAGTATCCAGTAGCACTGGGGAGATTTTCACAACCTCCAACAGAATAGACAGA
GAGAAACTCTGTGCCGGAGCTTCTTATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGG
TGATCCTCCCCAATGACTTTTTCAGACTGATCAAAATCAAGATCATTGTCAAGGATACCAATGA
TAATGCCCCCATGTTTCCGTCTCCCGTCATCAATATTTCCATCCCAGAGAACACTTTGATCAAC
AGTCGCTTTCCAATCCCATCAGCCACAGACCCTGACACGGGCTTCAATGGGGTACAGCATTATG
AATTGCTGAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAAAAGTG
GCCGCAATTGATCGTTCAGCAGAACTTGGATAGAGAACAAAAAGATACCTATGTGATGAAAATC
AAAGTGGAGGATGGGGGCACTCCACAGAAATCCAGCACAGCCATACTCCAGGTCACAGTAAGTG
ATGTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAAGTGCATATTCCAGAGAATGC
TCCTGTAGGGACCTCTGTGATTCAGCTCCATGCTACTGATGCAGACATAGGCAGCAATGCTGAA
ATCCGGTACATCTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAACA
CAACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGGGAAGAGACAGCCATTCACAAAGTGAC
AGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCCAGAGCCACCGTTACCATCAATGTCACAGAT
GTAAATGATAATCCTCCAAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGT
ATCTCTCTGAGAAAGATCCAGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACAC
GGATGTGAATGGCAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATCTGAAGGCAGTG
TATGACAACCAGTATCTGCTAGAGACCTCGTCTCTGCTGGACTATGAGGGCACCAAAGAATTCA
GCTTTAAAATCGTTGCCTCTGATTCTGGGAAGCCCAGTTTGAATCAGACTGCCCTGGTAAGGGT
TAAGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTT
TCTGAAAACAACCGACGTGGGTTATACTTAACAACTATTAGTGCTACGGATGAAGACAGTGGGA
AAAATGCAGACATTGTTTATCAGCTTGGACCCAATGCCTCCTTCTTTGATCTGGACAGAAAGAC
AGGAGTTCTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTA
ACTGCCAGGGACAACGGGACCCCTCCCCTGCAGAGCCAAGCAGCCGTGATAGTTACTGTTCTGG
ATGAGAATGACAATAGCCCCAAGTTCACTCATAATCATTTTCAGTTTTTTGTGTCTGAGAATCT
GCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGACGAGGACGCTGGAGAGAATAAAGCT
GTGACTCTTTCCATTCTAAATGACAATGAAAATTTCGTGTTGGATCCCTATTCAGGAGTCATAA
AGTCCAATGTCTCCTTTGATAGAGAACAGCAGAGTTCCTACACGTTTGATGTCAAAGCCACTGA
CGGAGGACAGCCACCTCGGTCCTCTACTGCAAAAGTAACTATCAATGTCATGGATGTCAATGAC
AATAGTCCAGTTGTCATTTCTCCACCATCCAACACCTCCTTTAAGTTGGTGCCCCTCTCAGCCA
TTCCTGGTTCCGTGGTTGCTGAAGTTTTTGCTGTGGATATTGACACCGGGATGAATGCAGAACT
TAAGTATACCATAGTGAGCGGGAACAACAAAGGATTATTTCGGATTGATCCAGTAACGGGCAAT
ATCACCTTAGAAGAAAAGCCGGCACCTACTGACGTGGGCCTGCACCGTCTCGTGGTCAACATAA
GTGACCTGGGGTACCCTAAGGCTTTGCACACTCTTGTGCTGGTATTTCTTTACGTGAACGACAC
TGCTGGAAACGCCTCGTATATATATGACTTGATCCGTAGGACTATGGAGACCCCGCTGGACAGG
AACATAGGAGATAGTGGTCAACCTTATCAAAACGAGGACTATCTCACCATCATGATTGCCATCG
TTGCCGGGGCCATGGTCGTCATCGTCGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGC
GTCGAGGTTCAAGGCTGCTCAGAGGAGCAAACAAGGTGCTGAATGGATGTCCCCAAACCAGGAG
AATAAACAAAACAAGAAAAAGAAACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACT
TTGTTACTATCGAAGAGTCCAAACCTGATGATGCGGTTCATGAACCTATCAATGGGACCATAAG
CCTGCCTGCTGAGCTGGAGGAACAGAGTATAGGAAGATTTGACTGGGGCCCGGCCCCTCCAACA
ACCTTCAAGCCTAACAGCCCTGACCTGGCCAAGCACTACAAATCTGCCTCTCCACAGCCTGCGT
TTCATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAGCACCACGTCATTCAAGAGCTCCCTTT
GGACAACACCTTTGTTGGGGGCTGCGACACCCTTTCCAAACGCTCCTCCACTAGTTCAGATCAC
TTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGAC
AGTGTAACTCACACAGCAAAAATGACCTTATTCCTGTCACACATCAGAAATGCCCCAGCTCTAC
CGGTTTCCACATTCGAGAGAATGAAGAAAGTCATTCTGAGTCTCAGCGTCGTGTTACCTTTCAC
CTTCCGGATGGCTCCCAGGAAAGCTGCAGTGACAGTGGTCTGGGAGACCACGAGCCGGTGGGTA
GTGGAACCCTGATCTCACACCCTCTTCCTCTGGTTCAGCCACAGGACGAATTCTACGACCAGGC
CTCTCCGGACAAGAGGACCGAAGCAGACGGCAACTCGGACCCCAATTCTGAATTAAAAAGTACA
CGATGTTTTCTCCATGCCTGGGTCCAACCTCAAACAACAAAATAGACCGCTAAACTGACCTCTT
CTTCCTGGACTCTGAGGTAAGTTTATATCCCATCATAGATGAGGATTTCACTATTGATTTAGTT
TTAGCTACCAAGTGTGTTTCCTCAACTGTCTTTGTACCATCCTTAAGATTACTGTATTACACAG
TGCAGTGTGTAATGTTTTAAATAAACAGGTTAGTGATTTTGTCCCTTCTGTCTTAAAAGTTATA
AATATCTTATAAAAACATTTGACCTCCCATTGGATTAGATTATATTTGATGTTTTTGTCAACAG
TACTCAAAAACTTCAAAGGATTAGGCATATGAGACATCAGTAAATTTATCATAACTACTCACAC
ATGCAAATCAAAATGAATCCACCTGTTCCCTCCTTGCGTGTGTCATTAAAAACCATAAGAGTTT
CTTAACAAAGGAAATGTTGAGGTAAAAATGTAACTGGTACTTGAGGGTATTGGCCTGACAGGAT
AGCTGAATACTTTATATTGTAGTCACCTAATATTTATTAACCTATACAATAAAATCTGCATCCC
TACTGGGAAGCATATGTCACACTAGTTATCCCAGCACTGTTAATTCTGGGGATCACATGTTTGA
AGAAAGCCTGGACCATATACCAAGATCAGAGCCAACTATAGCATGTTATGATGCATGTCTTCCA
ATACTAAAACAGAAAAAAAGTGGCTTTTTAGCACTATGTAAATTAACGTTAGACAATAGGTTTG
CATATTTTTTATGGGGAAGATGAGTTATTTTTAGATTTCCTATTGATAATTGAAAAGTCGTTCT
GTTGGGTCTTCTTTCGATGATTTAAAAAAATGGAGTTTTAAGGAATATACTCTTCGTTTCATTG
AGGAAGAGGCATAAAGGGGTATGCAATTGCTCGTTTTTGCATTCATGAATCATTATTTTGCATA
GTGCACTTCAAAAAATTTGTTTGAGCAGAGACTGAAGGAAAGGCCAT

hide sequence

RefSeq Acc Id:

XM_039093368 ⟹ XP_038949296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,645,821 (-)	NCBI
mRatBN7.2	15	69,340,108 - 70,237,528 (-)	NCBI

RefSeq Acc Id:

XM_039093371 ⟹ XP_038949299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,817,746 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,409,392 - 70,237,531 (-)	NCBI

RefSeq Acc Id:

XM_039093372 ⟹ XP_038949300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,750,522 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,559,030 - 70,237,531 (-)	NCBI

RefSeq Acc Id:

XM_039093373 ⟹ XP_038949301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,750,522 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,559,030 - 70,237,531 (-)	NCBI

RefSeq Acc Id:

XM_039093374 ⟹ XP_038949302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,817,748 - 76,646,644 (-)	NCBI
mRatBN7.2	15	69,409,395 - 70,237,531 (-)	NCBI

RefSeq Acc Id:

XM_063274318 ⟹ XP_063130388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,645,820 (-)	NCBI

RefSeq Acc Id:

XM_063274319 ⟹ XP_063130389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,748,472 - 76,645,820 (-)	NCBI

RefSeq Acc Id:

XM_063274320 ⟹ XP_063130390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	75,817,747 - 76,646,644 (-)	NCBI

RefSeq Acc Id:

XR_005494384

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	76,078,024 - 76,127,778 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178617	(Get FASTA)	NCBI Sequence Viewer
	NP_001418423	(Get FASTA)	NCBI Sequence Viewer
	NP_001418424	(Get FASTA)	NCBI Sequence Viewer
	NP_001418425	(Get FASTA)	NCBI Sequence Viewer
	NP_001418426	(Get FASTA)	NCBI Sequence Viewer
	NP_001418427	(Get FASTA)	NCBI Sequence Viewer
	NP_001418428	(Get FASTA)	NCBI Sequence Viewer
	XP_008769089	(Get FASTA)	NCBI Sequence Viewer
	XP_017455199	(Get FASTA)	NCBI Sequence Viewer
	XP_017455200	(Get FASTA)	NCBI Sequence Viewer
	XP_017455201	(Get FASTA)	NCBI Sequence Viewer
	XP_017455202	(Get FASTA)	NCBI Sequence Viewer
	XP_038949296	(Get FASTA)	NCBI Sequence Viewer
	XP_038949299	(Get FASTA)	NCBI Sequence Viewer
	XP_038949300	(Get FASTA)	NCBI Sequence Viewer
	XP_038949301	(Get FASTA)	NCBI Sequence Viewer
	XP_038949302	(Get FASTA)	NCBI Sequence Viewer
	XP_063130388	(Get FASTA)	NCBI Sequence Viewer
	XP_063130389	(Get FASTA)	NCBI Sequence Viewer
	XP_063130390	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABJ52183	(Get FASTA)	NCBI Sequence Viewer
	EDM02402	(Get FASTA)	NCBI Sequence Viewer
	EDM02403	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054733
	ENSRNOP00000054733.5
	ENSRNOP00000077280
	ENSRNOP00000077280.1

RefSeq Acc Id:	NP_001178617 ⟸ NM_001191688
- Peptide Label:	precursor
- UniProtKB:	A0A8I5ZK96 (UniProtKB/TrEMBL), A6HU40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVY RLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKI KIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDI VETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQ VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR EETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIA LITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPS LNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNA SFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNH FQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSS YTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVD IDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLV LVFLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFV TVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAV HEPINGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKNDLIPV THQKCPSSTGFHIRENEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQ PQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQ HPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDTNRNQFNDRKQYGSNEGHFSNGSHMADIPL ANLKSYKQAGGTIESPKEHQL hide sequence

RefSeq Acc Id:	XP_008769089 ⟸ XM_008770867
- Peptide Label:	isoform X4
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVY RLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKI KIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDI VETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQ VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR EETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIA LITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPS LNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNA SFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNH FQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSS YTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVD IDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLV LVFLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFV TVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAV HEPINGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQPQDEFYDQASPD KRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQ KEWIKKDKLVNGHTLTRAWKEDTNRNQFNDRKQYGSNEGHFSNGSHMADIPLANLKSYKQAGGT IESPKEHQL hide sequence

RefSeq Acc Id:	XP_017455199 ⟸ XM_017599710
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZK96 (UniProtKB/TrEMBL), A6HU40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVY RLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKI KIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDI VETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQ VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR EETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIA LITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPS LNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNA SFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNH FQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSS YTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVD IDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLV LVFLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFV TVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAV HEPINGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKNDLIPV THQKCPSSTGFHIRENEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQ PQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQ HPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDTNRNQFNDRKQYGSNEGHFSNGSHMADIPL ANLKSYKQAGGTIESPKEHQL hide sequence

RefSeq Acc Id:	XP_017455200 ⟸ XM_017599711
- Peptide Label:	isoform X2
- UniProtKB:	F1LS01 (UniProtKB/TrEMBL), A6HU38 (UniProtKB/TrEMBL), A6HU40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVY RLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKI KIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDI VETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQ VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR EETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIA LITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPS LNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNA SFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNH FQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSS YTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVD IDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLV LVFLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFV TVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAV HEPINGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFHLPDG SQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGL AEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKED TNRNQFNDRKQYGSNEGHFSNGSHMADIPLANLKSYKQAGGTIESPKEHQL hide sequence

RefSeq Acc Id:	XP_017455201 ⟸ XM_017599712
- Peptide Label:	isoform X3
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVY RLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKI KIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDI VETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQ VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR EETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIA LITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPS LNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNA SFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNH FQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSS YTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVD IDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLV LVFLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFV TVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAV HEPINGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKNDLIPV THQKCPSSTGFHIRENEESHSEPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCT QECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDTNRNQFND RKQYGSNEGHFSNGSHMADIPLANLKSYKQAGGTIESPKEHQL hide sequence

RefSeq Acc Id:	XP_017455202 ⟸ XM_017599713
- Peptide Label:	isoform X5
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVY RLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKI KIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDI VETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQ VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR EETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIA LITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPS LNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNA SFFDLDRKTGVLTASRVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNH FQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSS YTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVD IDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLV LVFLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFV TVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAV HEPINGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKNDLIPV THQKCPSSTGFHIRENEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQ PQDEFYDQASPDKRTEADGNSDPNSELKSTRCFLHAWVQPQTTK hide sequence

Ensembl Acc Id:

ENSRNOP00000054733 ⟸ ENSRNOT00000057924

RefSeq Acc Id:	XP_038949296 ⟸ XM_039093368
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZK96 (UniProtKB/TrEMBL), A6HU40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949299 ⟸ XM_039093371
- Peptide Label:	isoform X6
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949302 ⟸ XM_039093374
- Peptide Label:	isoform X10
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949301 ⟸ XM_039093373
- Peptide Label:	isoform X9
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949300 ⟸ XM_039093372
- Peptide Label:	isoform X7
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077280 ⟸ ENSRNOT00000096830

RefSeq Acc Id:	XP_063130389 ⟸ XM_063274319
- Peptide Label:	isoform X4
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130388 ⟸ XM_063274318
- Peptide Label:	isoform X2
- UniProtKB:	A6HU38 (UniProtKB/TrEMBL), F1LS01 (UniProtKB/TrEMBL), A6HU40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130390 ⟸ XM_063274320
- Peptide Label:	isoform X8
- UniProtKB:	A6HU40 (UniProtKB/TrEMBL)

Protein Domains

Cadherin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LS01-F1-model_v2	AlphaFold	F1LS01	1-1032	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306348	AgrOrtholog
BioCyc Gene	G2FUF-12869	BioCyc
Ensembl Genes	ENSRNOG00000038068	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057924	ENTREZGENE
	ENSRNOT00000057924.5	UniProtKB/TrEMBL
	ENSRNOT00000096830	ENTREZGENE
	ENSRNOT00000096830.1	UniProtKB/TrEMBL
Gene3D-CATH	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	Cadherin_N	UniProtKB/TrEMBL
	Protocadherin	UniProtKB/TrEMBL
	Protocadherin/Cadherin-CA	UniProtKB/TrEMBL
KEGG Report	rno:306091	UniProtKB/TrEMBL
NCBI Gene	306091	ENTREZGENE
PANTHER	CADHERIN-87A	UniProtKB/TrEMBL
	PROTOCADHERIN-9	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	Cadherin_2	UniProtKB/TrEMBL
	Protocadherin	UniProtKB/TrEMBL
PharmGKB	PCDH9	RGD
PhenoGen	Pcdh9	PhenoGen
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000038068	RatGTEx
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	A0A8I5ZK96	ENTREZGENE, UniProtKB/TrEMBL
	A6HU38	ENTREZGENE, UniProtKB/TrEMBL
	A6HU40	ENTREZGENE, UniProtKB/TrEMBL
	F1LS01	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-07-18	Pcdh9	protocadherin 9	LOC120097141	uncharacterized LOC120097141	Data Merged	737654	PROVISIONAL
2021-01-26	LOC120097141	uncharacterized LOC120097141			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Pcdh9	protocadherin 9	Pcdh9_predicted	protocadherin 9 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pcdh9_predicted	protocadherin 9 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD