Sugp2 (SURP and G patch domain containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sugp2 (SURP and G patch domain containing 2) Rattus norvegicus
Analyze
Symbol: Sugp2
Name: SURP and G patch domain containing 2
RGD ID: 1306042
Description: Predicted to enable RNA binding activity. Predicted to be involved in RNA processing. Predicted to be located in nuclear body. Predicted to be active in nucleoplasm. Orthologous to human SUGP2 (SURP and G-patch domain containing 2); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361126; serine/arginine-rich splicing factor 14; Sfrs14; splicing factor, arginine/serine-rich 14; Srsf14; SURP and G-patch domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,193,910 - 19,225,364 (-)NCBIGRCr8
mRatBN7.21619,159,951 - 19,191,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,164,767 - 19,191,340 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,201,651 - 19,231,064 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,334,130 - 20,363,498 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,254,612 - 19,284,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,908,162 - 20,939,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,910,177 - 20,939,545 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,758,637 - 20,789,858 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,644,374 - 19,673,741 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,655,740 - 19,674,045 (-)NCBI
Celera1619,350,650 - 19,380,138 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Sugp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,193,910 - 19,225,364 (-)NCBIGRCr8
mRatBN7.21619,159,951 - 19,191,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,164,767 - 19,191,340 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,201,651 - 19,231,064 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,334,130 - 20,363,498 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,254,612 - 19,284,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,908,162 - 20,939,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,910,177 - 20,939,545 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,758,637 - 20,789,858 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,644,374 - 19,673,741 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,655,740 - 19,674,045 (-)NCBI
Celera1619,350,650 - 19,380,138 (-)NCBICelera
Cytogenetic Map16p14NCBI
SUGP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,990,887 - 19,033,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,990,888 - 19,034,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371919,101,696 - 19,144,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,962,702 - 19,005,368 (-)NCBINCBI36Build 36hg18NCBI36
Celera1919,006,510 - 19,049,196 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,665,852 - 18,708,164 (-)NCBIHuRef
CHM1_11919,101,376 - 19,144,068 (-)NCBICHM1_1
T2T-CHM13v2.01919,126,690 - 19,169,638 (-)NCBIT2T-CHM13v2.0
Sugp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,686,838 - 70,715,755 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,686,876 - 70,732,565 (+)EnsemblGRCm39 Ensembl
GRCm38870,234,188 - 70,263,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,234,226 - 70,279,915 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,758,125 - 72,787,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,163,222 - 73,192,094 (+)NCBIMGSCv36mm8
Celera872,790,767 - 72,819,602 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Sugp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,710,656 - 2,732,203 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,710,656 - 2,731,849 (+)NCBIChiLan1.0ChiLan1.0
SUGP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,852,334 - 23,895,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,858,554 - 22,901,489 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,429,029 - 18,471,958 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,433,192 - 19,468,116 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,436,661 - 19,473,103 (-)Ensemblpanpan1.1panPan2
SUGP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,097,273 - 44,132,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,097,405 - 44,129,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,013,862 - 44,074,420 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,585,313 - 44,645,936 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,585,341 - 44,616,886 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,822,645 - 43,883,224 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,231,940 - 44,292,950 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,507,596 - 44,568,645 (+)NCBIUU_Cfam_GSD_1.0
Sugp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,791,918 - 202,826,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,340,640 - 2,375,773 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,341,103 - 2,375,755 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUGP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,828,251 - 58,865,852 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,828,009 - 58,865,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,626,985 - 58,664,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUGP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,453,085 - 17,496,161 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,455,840 - 17,492,313 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,826,009 - 1,870,605 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sugp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,990,622 - 2,012,965 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,991,529 - 2,013,694 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sugp2
85 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:218
Count of miRNA genes:151
Interacting mature miRNAs:170
Transcripts:ENSRNOT00000027457
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat

Markers in Region
D16Rat78  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,182,158 - 19,182,264 (+)MAPPERmRatBN7.2
Rnor_6.01620,930,366 - 20,930,471NCBIRnor6.0
Rnor_5.01620,780,679 - 20,780,784UniSTSRnor5.0
RGSC_v3.41619,664,561 - 19,664,667RGDRGSC3.4
RGSC_v3.41619,664,562 - 19,664,667UniSTSRGSC3.4
RGSC_v3.11619,664,559 - 19,664,665RGD
Celera1619,370,823 - 19,370,928UniSTS
SHRSP x BN Map167.88RGD
SHRSP x BN Map167.88UniSTS
Cytogenetic Map16p14UniSTS
RH128832  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,162,411 - 19,162,631 (+)MAPPERmRatBN7.2
Rnor_6.01620,910,623 - 20,910,842NCBIRnor6.0
Rnor_5.01620,760,937 - 20,761,156UniSTSRnor5.0
RGSC_v3.41619,644,820 - 19,645,039UniSTSRGSC3.4
Celera1619,351,096 - 19,351,315UniSTS
RH 3.4 Map16221.1UniSTS
Cytogenetic Map16p14UniSTS
RH129372  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,183,327 - 19,183,537 (+)MAPPERmRatBN7.2
mRatBN7.2414,210,546 - 14,210,756 (+)MAPPERmRatBN7.2
Rnor_6.0410,818,542 - 10,818,751NCBIRnor6.0
Rnor_6.01620,931,532 - 20,931,741NCBIRnor6.0
Rnor_5.01620,781,845 - 20,782,054UniSTSRnor5.0
Rnor_5.0410,810,800 - 10,811,009UniSTSRnor5.0
RGSC_v3.41619,665,728 - 19,665,937UniSTSRGSC3.4
RGSC_v3.449,731,126 - 9,731,335UniSTSRGSC3.4
Celera49,771,951 - 9,772,160UniSTS
Celera1619,371,986 - 19,372,195UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map4q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_360382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027457   ⟹   ENSRNOP00000027457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,164,767 - 19,191,340 (-)Ensembl
Rnor_6.0 Ensembl1620,910,177 - 20,939,545 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104056   ⟹   ENSRNOP00000090226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,167,011 - 19,191,340 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115218   ⟹   ENSRNOP00000084908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,164,767 - 19,191,340 (-)Ensembl
RefSeq Acc Id: NM_001108397   ⟹   NP_001101867
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,195,925 - 19,225,292 (-)NCBI
mRatBN7.21619,161,966 - 19,191,340 (-)NCBI
Rnor_6.01620,910,177 - 20,939,545 (-)NCBI
Rnor_5.01620,758,637 - 20,789,858 (-)NCBI
RGSC_v3.41619,644,374 - 19,673,741 (-)RGD
Celera1619,350,650 - 19,380,138 (-)RGD
Sequence:
RefSeq Acc Id: XM_063275503   ⟹   XP_063131573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,225,347 (-)NCBI
RefSeq Acc Id: XM_063275504   ⟹   XP_063131574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,224,806 (-)NCBI
RefSeq Acc Id: XM_063275505   ⟹   XP_063131575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,225,347 (-)NCBI
RefSeq Acc Id: XM_063275506   ⟹   XP_063131576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,225,349 (-)NCBI
RefSeq Acc Id: XR_010058298
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,225,013 (-)NCBI
RefSeq Acc Id: XR_010058299
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,196,592 - 19,225,347 (-)NCBI
RefSeq Acc Id: XR_010058300
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,223,032 (-)NCBI
RefSeq Acc Id: XR_010058301
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,223,041 (-)NCBI
RefSeq Acc Id: XR_010058302
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,193,910 - 19,225,364 (-)NCBI
RefSeq Acc Id: NP_001101867   ⟸   NM_001108397
- UniProtKB: D3ZJH2 (UniProtKB/TrEMBL),   A6KA71 (UniProtKB/TrEMBL),   A0A8I6A138 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000027457   ⟸   ENSRNOT00000027457
Ensembl Acc Id: ENSRNOP00000084908   ⟸   ENSRNOT00000115218
Ensembl Acc Id: ENSRNOP00000090226   ⟸   ENSRNOT00000104056
RefSeq Acc Id: XP_063131576   ⟸   XM_063275506
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131573   ⟸   XM_063275503
- Peptide Label: isoform X1
- UniProtKB: A6KA71 (UniProtKB/TrEMBL),   D3ZJH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131575   ⟸   XM_063275505
- Peptide Label: isoform X1
- UniProtKB: A6KA71 (UniProtKB/TrEMBL),   D3ZJH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131574   ⟸   XM_063275504
- Peptide Label: isoform X1
- UniProtKB: A6KA71 (UniProtKB/TrEMBL),   D3ZJH2 (UniProtKB/TrEMBL)
Protein Domains
G-patch   SURP motif

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJH2-F1-model_v2 AlphaFold D3ZJH2 1-1068 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700040
Promoter ID:EPDNEW_R10563
Type:single initiation site
Name:Sugp2_1
Description:SURP and G patch domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01620,939,571 - 20,939,631EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306042 AgrOrtholog
BioCyc Gene G2FUF-11767 BioCyc
Ensembl Genes ENSRNOG00000020269 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027457.5 UniProtKB/TrEMBL
  ENSRNOT00000104056.1 UniProtKB/TrEMBL
  ENSRNOT00000115218.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.790 UniProtKB/TrEMBL
InterPro G_patch UniProtKB/TrEMBL
  SUGP1/2 UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/TrEMBL
KEGG Report rno:361126 UniProtKB/TrEMBL
NCBI Gene 361126 ENTREZGENE
PANTHER PTHR23340 UniProtKB/TrEMBL
  SURP AND G-PATCH DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
PhenoGen Sugp2 PhenoGen
PROSITE G_PATCH UniProtKB/TrEMBL
  SURP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020269 RatGTEx
SMART G_patch UniProtKB/TrEMBL
  SWAP UniProtKB/TrEMBL
Superfamily-SCOP SSF109905 UniProtKB/TrEMBL
UniProt A0A8I6A138 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GI08_RAT UniProtKB/TrEMBL
  A6KA71 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJH2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Sugp2  SURP and G patch domain containing 2  Sfrs14  splicing factor, arginine/serine-rich 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-22 Sfrs14  splicing factor, arginine/serine-rich 14  Sugp2  SURP and G patch domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Sugp2  SURP and G patch domain containing 2  Srsf14  serine/arginine-rich splicing factor 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Srsf14  serine/arginine-rich splicing factor 14  Sfrs14  splicing factor, arginine/serine-rich 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-20 Sfrs14  splicing factor, arginine/serine-rich 14  Sugp2  SURP and G patch domain containing 2   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-14 Sugp2  SURP and G patch domain containing 2   Sfrs14  splicing factor, arginine/serine-rich 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sfrs14  splicing factor, arginine/serine-rich 14   Sfrs14_predicted  splicing factor, arginine/serine-rich 14 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sfrs14_predicted  splicing factor, arginine/serine-rich 14 (predicted)      Symbol and Name status set to approved 70820 APPROVED