Lsm3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated) - Rat Genome Database

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Gene: Lsm3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated) Rattus norvegicus
Analyze
Symbol: Lsm3
Name: LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
RGD ID: 1305971
Description: Predicted to enable U6 snRNA 3'-end binding activity. Predicted to be involved in P-body assembly and mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of Lsm1-7-Pat1 complex; Lsm2-8 complex; and nucleus. Predicted to be active in P-body. Orthologous to human LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated); PARTICIPATES IN spliceosome pathway; RNA degradation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC297455; LSM3 homolog, U6 small nuclear RNA associated; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM3 U6 small nuclear RNA and mRNA degradation associated; U6 snRNA-associated Sm-like protein LSm3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,578,185 - 125,584,429 (+)NCBIGRCr8
mRatBN7.24124,021,023 - 124,027,269 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,021,023 - 124,027,269 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,486,995 - 129,493,234 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,261,423 - 125,267,662 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,885,977 - 123,892,216 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,162,086 - 123,168,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,162,086 - 123,168,330 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,377,370 - 187,383,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,700,026 - 125,706,270 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,945,303 - 125,950,751 (+)NCBI
Celera4112,940,482 - 112,946,726 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:10369684   PMID:10523320   PMID:11991638   PMID:22658674   PMID:22681889   PMID:26912367   PMID:28781166   PMID:31505169  


Genomics

Comparative Map Data
Lsm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,578,185 - 125,584,429 (+)NCBIGRCr8
mRatBN7.24124,021,023 - 124,027,269 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,021,023 - 124,027,269 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,486,995 - 129,493,234 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,261,423 - 125,267,662 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,885,977 - 123,892,216 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,162,086 - 123,168,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,162,086 - 123,168,330 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,377,370 - 187,383,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,700,026 - 125,706,270 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,945,303 - 125,950,751 (+)NCBI
Celera4112,940,482 - 112,946,726 (+)NCBICelera
Cytogenetic Map4q34NCBI
LSM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,178,817 - 14,201,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,178,817 - 14,201,122 (+)EnsemblGRCh38hg38GRCh38
GRCh37314,220,317 - 14,242,622 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,195,341 - 14,214,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 34314,195,340 - 14,214,840NCBI
Celera314,158,457 - 14,178,097 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,155,207 - 14,174,845 (+)NCBIHuRef
CHM1_1314,170,613 - 14,190,252 (+)NCBICHM1_1
T2T-CHM13v2.0314,180,681 - 14,202,982 (+)NCBIT2T-CHM13v2.0
Lsm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,493,017 - 91,499,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,492,910 - 91,499,607 (+)EnsemblGRCm39 Ensembl
GRCm38691,516,035 - 91,522,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,515,928 - 91,522,625 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,466,029 - 91,472,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,481,539 - 91,488,124 (+)NCBIMGSCv36mm8
Celera693,409,326 - 93,415,908 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.58NCBI
Lsm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542916,968,490 - 16,977,517 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542916,968,490 - 16,977,517 (+)NCBIChiLan1.0ChiLan1.0
LSM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,156,329 - 14,225,193 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,161,091 - 14,229,955 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,097,035 - 14,165,942 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1314,437,497 - 14,456,727 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl314,437,497 - 14,456,726 (+)Ensemblpanpan1.1panPan2
LSM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1204,328,930 - 4,342,731 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl204,329,038 - 4,342,859 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha204,366,825 - 4,380,622 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0204,350,284 - 4,364,092 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl204,350,392 - 4,364,220 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1411,266,194 - 11,266,502 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,069,769 - 4,083,561 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0204,392,051 - 4,405,847 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0204,356,498 - 4,370,300 (+)NCBIUU_Cfam_GSD_1.0
Lsm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,762,653 - 18,769,706 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602140,004 - 147,035 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602140,014 - 147,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,336,907 - 70,348,651 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,339,685 - 70,349,802 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,737,428 - 77,746,329 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LSM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,121,674 - 50,141,071 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041116,354,553 - 116,374,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lsm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248721,428,073 - 1,438,563 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248721,428,885 - 1,438,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lsm3
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:43
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000011557
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat

Markers in Region
RH133911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24124,022,682 - 124,022,894 (+)MAPPERmRatBN7.2
Rnor_6.04123,163,746 - 123,163,957NCBIRnor6.0
Rnor_5.04187,381,743 - 187,381,954UniSTSRnor5.0
RGSC_v3.44125,701,686 - 125,701,897UniSTSRGSC3.4
Celera4112,942,142 - 112,942,353UniSTS
RH 3.4 Map4736.07UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000011557   ⟹   ENSRNOP00000011557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4124,021,023 - 124,027,269 (+)Ensembl
Rnor_6.0 Ensembl4123,162,086 - 123,168,330 (+)Ensembl
RefSeq Acc Id: NM_001106611   ⟹   NP_001100081
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84125,578,185 - 125,584,429 (+)NCBI
mRatBN7.24124,021,023 - 124,027,269 (+)NCBI
Rnor_6.04123,162,086 - 123,168,330 (+)NCBI
Rnor_5.04187,377,370 - 187,383,614 (-)NCBI
RGSC_v3.44125,700,026 - 125,706,270 (+)RGD
Celera4112,940,482 - 112,946,726 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100081 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91371 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011557.4
RefSeq Acc Id: NP_001100081   ⟸   NM_001106611
- UniProtKB: D4A7U6 (UniProtKB/TrEMBL),   A6IBA3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011557   ⟸   ENSRNOT00000011557
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7U6-F1-model_v2 AlphaFold D4A7U6 1-102 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693253
Promoter ID:EPDNEW_R3777
Type:multiple initiation site
Name:Lsm3_1
Description:LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04123,162,172 - 123,162,232EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305971 AgrOrtholog
BioCyc Gene G2FUF-43719 BioCyc
Ensembl Genes ENSRNOG00000008733 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011557.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm3 UniProtKB/TrEMBL
  LSM_domain UniProtKB/TrEMBL
  LSM_related_domain UniProtKB/TrEMBL
  Sm-like_LSM3 UniProtKB/TrEMBL
KEGG Report rno:297455 UniProtKB/TrEMBL
NCBI Gene 297455 ENTREZGENE
PANTHER PTHR13110 UniProtKB/TrEMBL
  U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Lsm3 PhenoGen
PROSITE PS52002 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008733 RatGTEx
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP Sm_like_riboprot UniProtKB/TrEMBL
UniProt A6IBA3 ENTREZGENE, UniProtKB/TrEMBL
  D4A7U6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-09 Lsm3  LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated  Lsm3  LSM3 U6 small nuclear RNA and mRNA degradation associated  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-01 Lsm3  LSM3 U6 small nuclear RNA and mRNA degradation associated  Lsm3  LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Lsm3  LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)   Lsm3_predicted  LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Lsm3_predicted  LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED