Mrrf (mitochondrial ribosome recycling factor) - Rat Genome Database

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Gene: Mrrf (mitochondrial ribosome recycling factor) Rattus norvegicus
Analyze
Symbol: Mrrf
Name: mitochondrial ribosome recycling factor
RGD ID: 1305897
Description: Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in ribosome disassembly and translation. Predicted to be active in mitochondrion. Orthologous to human MRRF (mitochondrial ribosome recycling factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC311903; MGC93722; ribosome-recycling factor, mitochondrial; ribosome-releasing factor, mitochondrial; RRF
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8339,884,530 - 39,941,317 (+)NCBIGRCr8
mRatBN7.2319,487,124 - 19,543,911 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl319,487,182 - 19,543,908 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx322,565,702 - 22,621,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0331,150,632 - 31,206,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0329,397,780 - 29,454,451 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0315,463,884 - 15,520,621 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl315,463,953 - 15,520,618 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0320,773,131 - 20,829,833 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4315,247,054 - 15,303,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1315,143,425 - 15,200,091 (+)NCBI
Celera314,199,058 - 14,255,750 (+)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
ribosome disassembly  (ISO,ISS)
translation  (IBA,IEA)

Cellular Component
mitochondrion  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:18614015   PMID:19716793  


Genomics

Comparative Map Data
Mrrf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8339,884,530 - 39,941,317 (+)NCBIGRCr8
mRatBN7.2319,487,124 - 19,543,911 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl319,487,182 - 19,543,908 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx322,565,702 - 22,621,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0331,150,632 - 31,206,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0329,397,780 - 29,454,451 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0315,463,884 - 15,520,621 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl315,463,953 - 15,520,618 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0320,773,131 - 20,829,833 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4315,247,054 - 15,303,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1315,143,425 - 15,200,091 (+)NCBI
Celera314,199,058 - 14,255,750 (+)NCBICelera
Cytogenetic Map3p11NCBI
MRRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,264,882 - 122,331,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,264,603 - 122,331,337 (+)EnsemblGRCh38hg38GRCh38
GRCh379125,027,161 - 125,093,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,066,968 - 124,125,564 (+)NCBINCBI36Build 36hg18NCBI36
Celera995,675,208 - 95,734,069 (+)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef994,641,577 - 94,700,513 (+)NCBIHuRef
CHM1_19125,174,951 - 125,233,831 (+)NCBICHM1_1
T2T-CHM13v2.09134,462,401 - 134,528,846 (+)NCBIT2T-CHM13v2.0
Mrrf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39236,025,672 - 36,080,296 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl236,026,401 - 36,080,659 (+)EnsemblGRCm39 Ensembl
GRCm38236,135,660 - 36,190,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl236,136,389 - 36,190,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv37235,991,918 - 36,045,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36235,992,187 - 36,045,390 (+)NCBIMGSCv36mm8
Celera235,840,067 - 35,880,949 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Mrrf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554195,750,344 - 5,800,723 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554195,750,344 - 5,800,723 (-)NCBIChiLan1.0ChiLan1.0
MRRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,022,748 - 17,081,613 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1917,019,768 - 17,083,962 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,389,726 - 93,448,596 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19121,730,540 - 121,792,006 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9121,730,783 - 121,790,157 (+)Ensemblpanpan1.1panPan2
MRRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1960,256,728 - 60,314,561 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl960,258,977 - 60,314,864 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha959,452,180 - 59,509,992 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0961,171,660 - 61,229,626 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl961,171,670 - 61,229,627 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1959,946,110 - 60,003,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0960,262,208 - 60,320,168 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0960,350,840 - 60,408,865 (-)NCBIUU_Cfam_GSD_1.0
Mrrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947190,881,063 - 190,931,689 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648710,649,373 - 10,702,001 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648710,649,395 - 10,700,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1262,353,032 - 262,418,243 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11262,355,994 - 262,416,116 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21294,656,012 - 294,713,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRRF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11217,266,365 - 17,330,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1217,263,882 - 17,330,341 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603525,719,030 - 25,783,783 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrrf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476012,971,493 - 13,032,291 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476012,974,428 - 13,032,016 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mrrf
263 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:460
Count of miRNA genes:234
Interacting mature miRNAs:300
Transcripts:ENSRNOT00000033047
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat

Markers in Region
RH132526  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p11UniSTS
BQ205974  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,505,782 - 19,505,955 (+)MAPPERmRatBN7.2
Rnor_6.0315,482,493 - 15,482,665NCBIRnor6.0
Rnor_5.0320,791,705 - 20,791,877UniSTSRnor5.0
RGSC_v3.4315,265,594 - 15,265,766UniSTSRGSC3.4
Celera314,217,598 - 14,217,770UniSTS
RH 3.4 Map3212.02UniSTS
Cytogenetic Map3p11UniSTS
UniSTS:234165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,690,085 - 11,690,314 (+)MAPPERmRatBN7.2
Rnor_6.029,282,585 - 9,282,813NCBIRnor6.0
Rnor_5.029,162,877 - 9,163,105UniSTSRnor5.0
Celera28,052,144 - 8,052,372UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map3p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 28 20 10 20 1 3 66 31 38 11 1
Low 8 29 21 9 21 7 8 8 4 3 7
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000033047   ⟹   ENSRNOP00000038041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl319,487,243 - 19,543,908 (+)Ensembl
Rnor_6.0 Ensembl315,463,953 - 15,520,618 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113456   ⟹   ENSRNOP00000083698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl319,487,182 - 19,541,686 (+)Ensembl
RefSeq Acc Id: NM_001008354   ⟹   NP_001008355
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,649 - 39,941,317 (+)NCBI
mRatBN7.2319,487,243 - 19,543,911 (+)NCBI
Rnor_6.0315,463,953 - 15,520,621 (+)NCBI
Rnor_5.0320,773,131 - 20,829,833 (+)NCBI
RGSC_v3.4315,247,054 - 15,303,722 (+)RGD
Celera314,199,058 - 14,255,750 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234069   ⟹   XP_006234131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,530 - 39,941,317 (+)NCBI
mRatBN7.2319,487,124 - 19,543,911 (+)NCBI
Rnor_6.0315,463,884 - 15,520,621 (+)NCBI
Rnor_5.0320,773,131 - 20,829,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105266   ⟹   XP_038961194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,946 - 39,941,317 (+)NCBI
mRatBN7.2319,487,380 - 19,543,911 (+)NCBI
RefSeq Acc Id: XM_039105267   ⟹   XP_038961195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,530 - 39,941,317 (+)NCBI
mRatBN7.2319,487,124 - 19,543,911 (+)NCBI
RefSeq Acc Id: XM_039105268   ⟹   XP_038961196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,889,513 - 39,941,317 (+)NCBI
mRatBN7.2319,492,107 - 19,543,911 (+)NCBI
RefSeq Acc Id: XM_063283973   ⟹   XP_063140043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,946 - 39,941,317 (+)NCBI
RefSeq Acc Id: XM_063283974   ⟹   XP_063140044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,530 - 39,941,317 (+)NCBI
RefSeq Acc Id: XM_063283975   ⟹   XP_063140045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,884,530 - 39,901,654 (+)NCBI
RefSeq Acc Id: NP_001008355   ⟸   NM_001008354
- Peptide Label: precursor
- UniProtKB: Q5RKI9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234131   ⟸   XM_006234069
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000038041   ⟸   ENSRNOT00000033047
RefSeq Acc Id: XP_038961195   ⟸   XM_039105267
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G9D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961194   ⟸   XM_039105266
- Peptide Label: isoform X1
- UniProtKB: Q5RKI9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038961196   ⟸   XM_039105268
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000083698   ⟸   ENSRNOT00000113456
RefSeq Acc Id: XP_063140044   ⟸   XM_063283974
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063140045   ⟸   XM_063283975
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063140043   ⟸   XM_063283973
- Peptide Label: isoform X3
Protein Domains
Ribosome recycling factor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RKI9-F1-model_v2 AlphaFold Q5RKI9 1-262 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692024
Promoter ID:EPDNEW_R2548
Type:multiple initiation site
Name:Mrrf_1
Description:mitochondrial ribosome recycling factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0315,463,919 - 15,463,979EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305897 AgrOrtholog
BioCyc Gene G2FUF-50013 BioCyc
Ensembl Genes ENSRNOG00000025997 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055008826 UniProtKB/Swiss-Prot
  ENSRNOG00060021771 UniProtKB/Swiss-Prot
  ENSRNOG00065019773 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000033047 ENTREZGENE
  ENSRNOT00000033047.4 UniProtKB/Swiss-Prot
  ENSRNOT00000113456 ENTREZGENE
  ENSRNOT00000113456.1 UniProtKB/TrEMBL
  ENSRNOT00055014895 UniProtKB/Swiss-Prot
  ENSRNOT00060037744 UniProtKB/Swiss-Prot
  ENSRNOT00065033321 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.132.20 UniProtKB/Swiss-Prot
  3.30.1360.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7106905 IMAGE-MGC_LOAD
InterPro Ribosome_recyc_fac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosome_recyc_fac_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRF_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:311903 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93722 IMAGE-MGC_LOAD
NCBI Gene 311903 ENTREZGENE
PANTHER PTHR20982 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOME-RECYCLING FACTOR, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mrrf PhenoGen
RatGTEx ENSRNOG00000025997 RatGTEx
  ENSRNOG00055008826 RatGTEx
  ENSRNOG00060021771 RatGTEx
  ENSRNOG00065019773 RatGTEx
Superfamily-SCOP SSF55194 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6G9D1 ENTREZGENE, UniProtKB/TrEMBL
  Q5RKI9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Mrrf  mitochondrial ribosome recycling factor  Mrrf_predicted  mitochondrial ribosome recycling factor (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mrrf_predicted  mitochondrial ribosome recycling factor (predicted)      Symbol and Name status set to approved 70820 APPROVED