Dnajb4 (DnaJ heat shock protein family (Hsp40) member B4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Dnajb4 (DnaJ heat shock protein family (Hsp40) member B4) Rattus norvegicus
Analyze
Symbol: Dnajb4
Name: DnaJ heat shock protein family (Hsp40) member B4
RGD ID: 1305826
Description: Predicted to enable ATPase activator activity; protein-folding chaperone binding activity; and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding and negative regulation of transcription by RNA polymerase II. Predicted to be located in Z disc; nucleoplasm; and plasma membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in congenital myopathy 21. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DnaJ (Hsp40) homolog, subfamily B, member 4; DnaJ (Hsp40) homolog, subfamily B, member 4-like; dnaJ homolog subfamily B member 4; LOC295549
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,790,296 - 243,819,042 (-)NCBIGRCr8
mRatBN7.22241,129,346 - 241,159,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,944,119 - 248,972,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,831,137 - 246,859,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,730,451 - 241,759,204 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,394,692 - 257,425,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,394,818 - 257,425,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,071,439 - 276,102,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,663,022 - 250,685,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,065,020 - 233,093,753 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(E)-cinnamyl alcohol  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-benzothiazole-2-thiol  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,5-hexanedione  (EXP)
2,6-dinitrotoluene  (EXP)
2-bromo-2-(bromomethyl)pentanedinitrile  (ISO)
2-butoxyethanol  (ISO)
2-Ethylhexyl acrylate  (ISO)
2-hydroxyethyl methacrylate  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4',5-tetrachlorosalicylanilide  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-nitrobenzyl bromide  (ISO)
abietic acid  (ISO)
aconitine  (EXP)
acrolein  (EXP,ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
antimonite  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Aurin  (ISO)
azoxystrobin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
Bisphenol B  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbaryl  (ISO)
carbon nanotube  (ISO)
celastrol  (ISO)
chloropicrin  (ISO)
chrysene  (ISO)
cinnamyl alcohol  (ISO)
cisplatin  (ISO)
citral  (ISO)
clofibrate  (ISO)
clotrimazole  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crotonaldehyde  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethyl malate  (ISO)
diethyl maleate  (ISO)
dihydroxyacetone  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dodecan-1-ol  (ISO)
Dodecyl gallate  (ISO)
elemental selenium  (ISO)
elesclomol  (ISO)
ethyl methanesulfonate  (ISO)
eugenol  (ISO)
farnesol  (ISO)
fenofibrate  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gedunin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
geranial  (ISO)
glyoxal  (ISO)
isoeugenol  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
mercury dichloride  (EXP)
methamphetamine  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel dichloride  (ISO)
ochratoxin A  (ISO)
organoselenium compound  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (EXP)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resorcinol  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SCH 23390  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thalidomide  (ISO)
thimerosal  (ISO)
thiostrepton  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trans-isoeugenol  (ISO)
triadimefon  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
Tungsten carbide  (ISO)
undecanal  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc pyrithione  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA,ISO)
Z disc  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Mapping the in vitro interactome of cardiac sodium (Na+ )-calcium (Ca2+ ) exchanger 1 (NCX1). Lubelwana Hafver T, etal., Proteomics. 2017 Sep;17(17-18). doi: 10.1002/pmic.201600417.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21231916   PMID:22871113   PMID:23376485   PMID:24318877  


Genomics

Comparative Map Data
Dnajb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,790,296 - 243,819,042 (-)NCBIGRCr8
mRatBN7.22241,129,346 - 241,159,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,944,119 - 248,972,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,831,137 - 246,859,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,730,451 - 241,759,204 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,394,692 - 257,425,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,394,818 - 257,425,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,071,439 - 276,102,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,663,022 - 250,685,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,065,020 - 233,093,753 (-)NCBICelera
Cytogenetic Map2q45NCBI
DNAJB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,979,175 - 78,017,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,979,175 - 78,017,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,444,859 - 78,483,648 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,243,224 - 78,255,586 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,182,656 - 78,195,014NCBI
Celera176,709,697 - 76,722,060 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,602,292 - 76,614,655 (+)NCBIHuRef
CHM1_1178,587,021 - 78,599,380 (+)NCBICHM1_1
T2T-CHM13v2.0177,817,970 - 77,856,789 (+)NCBIT2T-CHM13v2.0
Dnajb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,887,217 - 151,915,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,884,148 - 151,915,939 (-)EnsemblGRCm39 Ensembl
GRCm383152,181,580 - 152,210,432 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,178,511 - 152,210,302 (-)EnsemblGRCm38mm10GRCm38
MGSCv373151,846,919 - 151,873,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,121,482 - 152,147,469 (-)NCBIMGSCv36mm8
Celera3158,661,623 - 158,688,134 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.03NCBI
Dnajb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,212,579 - 15,245,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,212,579 - 15,245,538 (-)NCBIChiLan1.0ChiLan1.0
DNAJB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,867,698 - 148,910,246 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,030,287 - 148,072,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,198,130 - 77,237,014 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,280,121 - 79,318,855 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,305,605 - 79,318,199 (+)Ensemblpanpan1.1panPan2
DNAJB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,878,823 - 68,923,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl668,879,690 - 68,888,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,536,300 - 71,581,141 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,463,848 - 69,508,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,463,850 - 69,507,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1668,971,033 - 69,015,441 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,915,350 - 68,959,992 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,402,186 - 69,446,409 (-)NCBIUU_Cfam_GSD_1.0
Dnajb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,250,579 - 89,286,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,785,324 - 4,800,215 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,785,351 - 4,796,581 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,243,937 - 135,281,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,243,927 - 135,281,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,425,681 - 125,462,891 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,158,552 - 55,172,475 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,157,327 - 55,171,301 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,320,060 - 62,356,906 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474219,249,122 - 19,260,502 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474219,249,122 - 19,279,504 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnajb4
91 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000017381
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat

Markers in Region
BQ205681  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,130,437 - 241,130,612 (+)MAPPERmRatBN7.2
Rnor_6.02257,395,845 - 257,396,019NCBIRnor6.0
Rnor_5.02276,072,592 - 276,072,766UniSTSRnor5.0
RGSC_v3.42250,684,969 - 250,685,143UniSTSRGSC3.4
Celera2233,065,119 - 233,065,293UniSTS
RH 3.4 Map21651.22UniSTS
Cytogenetic Map2q45UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000017381   ⟹   ENSRNOP00000017381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)Ensembl
Rnor_6.0 Ensembl2257,395,747 - 257,425,242 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086878   ⟹   ENSRNOP00000075386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2257,394,818 - 257,418,425 (-)Ensembl
RefSeq Acc Id: NM_001013076   ⟹   NP_001013094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,790,296 - 243,819,042 (-)NCBI
mRatBN7.22241,130,339 - 241,159,089 (-)NCBI
Rnor_6.02257,395,746 - 257,425,242 (-)NCBI
Rnor_5.02276,071,439 - 276,102,091 (-)NCBI
RGSC_v3.42250,663,022 - 250,685,242 (+)RGD
Celera2233,065,020 - 233,093,753 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233488   ⟹   XP_006233550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,790,302 - 243,818,997 (-)NCBI
mRatBN7.22241,129,346 - 241,159,272 (-)NCBI
Rnor_6.02257,394,692 - 257,425,344 (-)NCBI
Rnor_5.02276,071,439 - 276,102,091 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001013094 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233550 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83638 (Get FASTA)   NCBI Sequence Viewer  
  EDL82486 (Get FASTA)   NCBI Sequence Viewer  
  EDL82487 (Get FASTA)   NCBI Sequence Viewer  
  EDL82488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017381.6
RefSeq Acc Id: NP_001013094   ⟸   NM_001013076
- UniProtKB: Q5XIP0 (UniProtKB/TrEMBL),   F1LNN0 (UniProtKB/TrEMBL),   A0A9K3Y755 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233550   ⟸   XM_006233488
- Peptide Label: isoform X1
- UniProtKB: Q5XIP0 (UniProtKB/TrEMBL),   F1LNN0 (UniProtKB/TrEMBL),   A0A9K3Y755 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017381   ⟸   ENSRNOT00000017381
Ensembl Acc Id: ENSRNOP00000075386   ⟸   ENSRNOT00000086878
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIP0-F1-model_v2 AlphaFold Q5XIP0 1-337 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691823
Promoter ID:EPDNEW_R2348
Type:initiation region
Name:Dnajb4_1
Description:DnaJ heat shock protein family member B4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02257,425,299 - 257,425,359EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305826 AgrOrtholog
BioCyc Gene G2FUF-50807 BioCyc
Ensembl Genes ENSRNOG00000013011 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017381.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  Urease metallochaperone UreE, N-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134832 IMAGE-MGC_LOAD
InterPro DnaJ_C UniProtKB/TrEMBL
  DnaJ_dom_sf UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/TrEMBL
  DnaJ_subfamily_B UniProtKB/TrEMBL
  HSP40/DnaJ_pept-bd UniProtKB/TrEMBL
KEGG Report rno:295549 UniProtKB/TrEMBL
MGC_CLONE MGC:94459 IMAGE-MGC_LOAD
NCBI Gene 295549 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 4 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  DnaJ_C UniProtKB/TrEMBL
PhenoGen Dnajb4 PhenoGen
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013011 RatGTEx
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP DnaJ_N UniProtKB/TrEMBL
  HSP40_DnaJ_pep UniProtKB/TrEMBL
UniProt A0A9K3Y755 ENTREZGENE, UniProtKB/TrEMBL
  F1LNN0 ENTREZGENE
  Q5XIP0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1LNN0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnajb4  DnaJ heat shock protein family (Hsp40) member B4  Dnajb4  DnaJ (Hsp40) homolog, subfamily B, member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Dnajb4  DnaJ (Hsp40) homolog, subfamily B, member 4  LOC100359900  DnaJ (Hsp40) homolog, subfamily B, member 4-like  Data merged from RGD:2323144 1643240 APPROVED
2010-05-06 LOC100359900  DnaJ (Hsp40) homolog, subfamily B, member 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Dnajb4  DnaJ (Hsp40) homolog, subfamily B, member 4  Dnajb4_predicted  DnaJ (Hsp40) homolog, subfamily B, member 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dnajb4_predicted  DnaJ (Hsp40) homolog, subfamily B, member 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED