Col14a1 (collagen type XIV alpha 1 chain) - Rat Genome Database

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Pathways
Gene: Col14a1 (collagen type XIV alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col14a1
Name: collagen type XIV alpha 1 chain
RGD ID: 1305806
Description: Predicted to act upstream of or within several processes, including collagen fibril organization; regulation of cell growth involved in cardiac muscle cell development; and ventricular cardiac muscle tissue development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in interstitial matrix. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma. Orthologous to human COL14A1 (collagen type XIV alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: collagen alpha-1(XIV) chain; collagen, type XIV, alpha 1; collagen, type XIV, alpha 1 (undulin); LOC314981; procollagen, type XIV, alpha 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2786,722,093 - 86,937,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,722,094 - 86,937,214 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx788,603,806 - 88,818,960 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0790,805,004 - 91,020,168 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0790,610,464 - 90,825,601 (+)NCBIRnor_WKY
Rnor_6.0795,054,877 - 95,274,073 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl795,074,236 - 95,273,298 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,678,302 - 95,896,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,801,534 - 92,032,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,835,769 - 92,067,196 (+)NCBI
Celera783,515,260 - 83,730,170 (+)NCBICelera
Cytogenetic Map7q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nonylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP,ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (EXP,ISO)
diuron  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
indole-3-methanol  (EXP)
inulin  (ISO)
isotretinoin  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
p-tert-Amylphenol  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
parathion  (ISO)
pentane-2,3-dione  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
rofecoxib  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
succimer  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Identification of a DNA methylome profile of esophageal squamous cell carcinoma and potential plasma epigenetic biomarkers for early diagnosis. Li X, etal., PLoS One. 2014 Jul 22;9(7):e103162. doi: 10.1371/journal.pone.0103162. eCollection 2014.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20551380   PMID:22658674   PMID:22906538   PMID:23376485   PMID:24006456   PMID:27068509  


Genomics

Comparative Map Data
Col14a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2786,722,093 - 86,937,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,722,094 - 86,937,214 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx788,603,806 - 88,818,960 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0790,805,004 - 91,020,168 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0790,610,464 - 90,825,601 (+)NCBIRnor_WKY
Rnor_6.0795,054,877 - 95,274,073 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl795,074,236 - 95,273,298 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,678,302 - 95,896,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,801,534 - 92,032,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,835,769 - 92,067,196 (+)NCBI
Celera783,515,260 - 83,730,170 (+)NCBICelera
Cytogenetic Map7q32NCBI
COL14A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388120,124,454 - 120,373,573 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8120,059,780 - 120,373,573 (+)EnsemblGRCh38hg38GRCh38
GRCh378121,137,341 - 121,385,812 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368121,206,533 - 121,453,454 (+)NCBINCBI36Build 36hg18NCBI36
Celera8117,326,467 - 117,573,360 (+)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8116,457,995 - 116,704,917 (+)NCBIHuRef
CHM1_18121,177,769 - 121,424,764 (+)NCBICHM1_1
T2T-CHM13v2.08121,253,115 - 121,502,333 (+)NCBIT2T-CHM13v2.0
Col14a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391555,171,040 - 55,384,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1555,171,146 - 55,384,199 (+)EnsemblGRCm39 Ensembl
GRCm381555,307,644 - 55,520,803 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1555,307,750 - 55,520,803 (+)EnsemblGRCm38mm10GRCm38
MGSCv371555,139,305 - 55,352,358 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361555,137,834 - 55,350,884 (+)NCBIMGSCv36mm8
Celera1556,848,017 - 57,052,928 (+)NCBICelera
Cytogenetic Map15D1NCBI
Col14a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541725,579,547 - 25,774,127 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541725,579,547 - 25,774,067 (+)NCBIChiLan1.0ChiLan1.0
COL14A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan18113,065,503 - 113,312,629 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08116,818,467 - 117,065,385 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18119,588,512 - 119,834,226 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8119,610,929 - 119,831,880 (+)Ensemblpanpan1.1panPan2
COL14A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11319,033,423 - 19,249,189 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1319,011,897 - 19,248,568 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1319,046,227 - 19,261,948 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01319,362,705 - 19,578,555 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1319,363,930 - 19,578,545 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11319,089,930 - 19,305,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01319,189,397 - 19,405,255 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01319,420,220 - 19,638,341 (+)NCBIUU_Cfam_GSD_1.0
Col14a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,013,239 - 19,216,888 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647026,440,615 - 26,643,015 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647026,440,606 - 26,643,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL14A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl418,690,198 - 18,924,971 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1418,690,197 - 18,925,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2419,715,672 - 19,949,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL14A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18114,701,662 - 114,946,216 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8114,701,664 - 114,887,483 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603925,334,593 - 25,585,541 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col14a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,982,646 - 18,172,904 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,982,646 - 18,172,742 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col14a1
1181 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:76
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000067649
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat

Markers in Region
RH134494  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2786,936,878 - 86,937,075 (+)MAPPERmRatBN7.2
Rnor_6.0795,273,738 - 95,273,934NCBIRnor6.0
Rnor_5.0795,895,791 - 95,895,987UniSTSRnor5.0
RGSC_v3.4792,032,631 - 92,032,827UniSTSRGSC3.4
Celera783,729,835 - 83,730,031UniSTS
RH 3.4 Map7604.7UniSTS
Cytogenetic Map7q32UniSTS
RH130146  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2786,935,892 - 86,936,094 (+)MAPPERmRatBN7.2
Rnor_6.0795,272,752 - 95,272,953NCBIRnor6.0
Rnor_5.0795,894,805 - 95,895,006UniSTSRnor5.0
RGSC_v3.4792,031,645 - 92,031,846UniSTSRGSC3.4
Celera783,728,849 - 83,729,050UniSTS
RH 3.4 Map7602.9UniSTS
Cytogenetic Map7q32UniSTS
BF415927  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2786,744,928 - 86,745,143 (+)MAPPERmRatBN7.2
Rnor_6.0795,076,623 - 95,076,837NCBIRnor6.0
Rnor_5.0795,700,048 - 95,700,262UniSTSRnor5.0
RGSC_v3.4791,824,896 - 91,825,110UniSTSRGSC3.4
Celera783,537,578 - 83,537,792UniSTS
RH 3.4 Map7612.2UniSTS
Cytogenetic Map7q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 38 46 39 5 39 7 10 18 28 10 7
Low 3 5 11 2 14 2 1 1 74 17 10 1 1
Below cutoff 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000067649   ⟹   ENSRNOP00000063778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,722,094 - 86,936,129 (+)Ensembl
Rnor_6.0 Ensembl795,074,236 - 95,273,298 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094987   ⟹   ENSRNOP00000093489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,722,094 - 86,937,214 (+)Ensembl
RefSeq Acc Id: NM_001130548   ⟹   NP_001124020
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2786,722,094 - 86,937,214 (+)NCBI
Rnor_6.0795,054,877 - 95,274,073 (+)NCBI
Rnor_5.0795,678,302 - 95,896,126 (+)NCBI
RGSC_v3.4791,801,534 - 92,032,966 (+)RGD
Celera783,515,260 - 83,730,170 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079204   ⟹   XP_038935132
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2786,722,093 - 86,937,215 (+)NCBI
RefSeq Acc Id: XM_039079205   ⟹   XP_038935133
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2786,722,093 - 86,936,124 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001124020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935132 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935133 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16250 (Get FASTA)   NCBI Sequence Viewer  
  EDM16251 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001124020   ⟸   NM_001130548
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: ENSRNOP00000063778   ⟸   ENSRNOT00000067649
RefSeq Acc Id: XP_038935132   ⟸   XM_039079204
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935133   ⟸   XM_039079205
- Peptide Label: isoform X2
- UniProtKB: D3ZZT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093489   ⟸   ENSRNOT00000094987
Protein Domains
Fibronectin type-III   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZT9-F1-model_v2 AlphaFold D3ZZT9 1-1794 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305806 AgrOrtholog
BioCyc Gene G2FUF-33374 BioCyc
Ensembl Genes ENSRNOG00000026415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000063778 ENTREZGENE
  ENSRNOP00000063778.4 UniProtKB/TrEMBL
  ENSRNOP00000093489 ENTREZGENE
  ENSRNOP00000093489.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067649 ENTREZGENE
  ENSRNOT00000067649.4 UniProtKB/TrEMBL
  ENSRNOT00000094987 ENTREZGENE
  ENSRNOT00000094987.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  FN_III UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene 314981 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(XIV) CHAIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PhenoGen Col14a1 PhenoGen
PRINTS FNTYPEIII UniProtKB/TrEMBL
  VWFADOMAIN UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  TSPN UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP ConA_like_lec_gl UniProtKB/TrEMBL
  FN_III-like UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A8I6AK67_RAT UniProtKB/TrEMBL
  D3ZZT9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Col14a1  collagen type XIV alpha 1 chain  Col14a1  collagen, type XIV, alpha 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-25 Col14a1  collagen, type XIV, alpha 1  Col14a1_predicted  procollagen, type XIV, alpha 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Col14a1_predicted  procollagen, type XIV, alpha 1 (predicted)    collagen, type XIV, alpha 1 (undulin) (predicted)  Name updated 1299863 APPROVED
2005-01-12 Col14a1_predicted  collagen, type XIV, alpha 1 (undulin) (predicted)      Symbol and Name status set to approved 70820 APPROVED