Zkscan3 (zinc finger with KRAB and SCAN domains 3) - Rat Genome Database

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Gene: Zkscan3 (zinc finger with KRAB and SCAN domains 3) Rattus norvegicus
Analyze
Symbol: Zkscan3
Name: zinc finger with KRAB and SCAN domains 3
RGD ID: 1305753
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in several processes, including negative regulation of autophagy; negative regulation of cellular senescence; and regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleoplasm. Orthologous to human ZKSCAN3 (zinc finger with KRAB and SCAN domains 3) and ZKSCAN4 (zinc finger with KRAB and SCAN domains 4); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC306977; MGC108865; Zfp307; zinc finger protein 307; zinc finger protein with KRAB and SCAN domains 3
RGD Orthologs
Human
Mouse
Bonobo
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,912,816 - 47,928,553 (+)NCBIGRCr8
mRatBN7.21743,217,168 - 43,232,828 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,217,222 - 43,232,827 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,274,623 - 45,290,236 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01750,033,731 - 50,049,344 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,524,146 - 44,539,759 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,247,724 - 45,263,422 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,247,776 - 45,263,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,204,677 - 58,220,555 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,862,534 - 50,901,252 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,865,374 - 50,880,759 (+)NCBI
Celera1753,235,157 - 53,250,769 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18940803   PMID:23434374  


Genomics

Comparative Map Data
Zkscan3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,912,816 - 47,928,553 (+)NCBIGRCr8
mRatBN7.21743,217,168 - 43,232,828 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,217,222 - 43,232,827 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,274,623 - 45,290,236 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01750,033,731 - 50,049,344 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,524,146 - 44,539,759 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,247,724 - 45,263,422 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,247,776 - 45,263,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,204,677 - 58,220,555 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,862,534 - 50,901,252 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,865,374 - 50,880,759 (+)NCBI
Celera1753,235,157 - 53,250,769 (-)NCBICelera
Cytogenetic Map17p11NCBI
ZKSCAN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,349,878 - 28,369,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,349,947 - 28,369,172 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,317,724 - 28,336,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,425,738 - 28,442,503 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,425,737 - 28,442,502NCBI
Celera629,924,132 - 29,940,962 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,124,766 - 28,144,005 (+)NCBIHuRef
CHM1_1628,320,076 - 28,339,339 (+)NCBICHM1_1
T2T-CHM13v2.0628,221,444 - 28,240,735 (+)NCBIT2T-CHM13v2.0
Zkscan3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,571,174 - 21,586,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,571,173 - 21,586,925 (-)EnsemblGRCm39 Ensembl
GRCm381321,387,004 - 21,402,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,387,003 - 21,402,755 (-)EnsemblGRCm38mm10GRCm38
MGSCv371321,478,873 - 21,494,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,394,546 - 21,412,211 (-)NCBIMGSCv36mm8
Celera1321,652,946 - 21,668,698 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.78NCBI
ZKSCAN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,971,264 - 42,990,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,972,274 - 38,995,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,157,736 - 28,174,906 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,828,297 - 28,847,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,828,298 - 28,847,596 (+)Ensemblpanpan1.1panPan2
Zkscan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,778,053 - 28,795,403 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493677243 - 7,099 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZKSCAN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,199,513 - 44,216,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,200,164 - 44,216,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604428,042,781 - 28,062,276 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zkscan3
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:647
Count of miRNA genes:270
Interacting mature miRNAs:347
Transcripts:ENSRNOT00000024783, ENSRNOT00000066981
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat

Markers in Region
AI132359  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21743,232,360 - 43,232,587 (+)MAPPERmRatBN7.2
Rnor_6.01745,262,950 - 45,263,180NCBIRnor6.0
Rnor_5.01758,204,917 - 58,205,147UniSTSRnor5.0
Celera1753,235,397 - 53,235,623UniSTS
Cytogenetic Map17q11UniSTS
RH143072  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21743,226,055 - 43,226,156 (+)MAPPERmRatBN7.2
Rnor_6.01745,256,635 - 45,256,735NCBIRnor6.0
Rnor_5.01758,211,556 - 58,211,656UniSTSRnor5.0
RGSC_v3.41750,871,374 - 50,871,474UniSTSRGSC3.4
Celera1753,241,828 - 53,241,928UniSTS
Cytogenetic Map17q11UniSTS
RH124729  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21743,232,557 - 43,232,654 (+)MAPPERmRatBN7.2
Rnor_6.01745,263,151 - 45,263,247NCBIRnor6.0
Rnor_5.01758,204,850 - 58,204,946UniSTSRnor5.0
Celera1753,235,330 - 53,235,426UniSTS
Cytogenetic Map17q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC089847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK602433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080655   ⟹   ENSRNOP00000072953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1743,223,450 - 43,226,630 (+)Ensembl
Rnor_6.0 Ensembl1745,247,794 - 45,263,418 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081063   ⟹   ENSRNOP00000069061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1743,217,222 - 43,232,827 (+)Ensembl
Rnor_6.0 Ensembl1745,247,776 - 45,262,858 (+)Ensembl
RefSeq Acc Id: NM_001012053   ⟹   NP_001012053
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,941 - 47,928,553 (+)NCBI
mRatBN7.21743,217,215 - 43,232,827 (+)NCBI
Rnor_6.01745,247,794 - 45,263,420 (+)NCBI
Rnor_5.01758,204,677 - 58,220,555 (-)NCBI
RGSC_v3.41750,862,534 - 50,901,252 (+)RGD
Celera1753,235,157 - 53,250,769 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254099   ⟹   XP_006254161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,904 - 47,928,553 (+)NCBI
mRatBN7.21743,217,196 - 43,232,828 (+)NCBI
Rnor_6.01745,247,749 - 45,263,422 (+)NCBI
Rnor_5.01758,204,677 - 58,220,555 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254101   ⟹   XP_006254163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,899 - 47,928,553 (+)NCBI
mRatBN7.21743,217,168 - 43,232,828 (+)NCBI
Rnor_6.01745,247,724 - 45,263,422 (+)NCBI
Rnor_5.01758,204,677 - 58,220,555 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771726   ⟹   XP_008769948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,917 - 47,928,553 (+)NCBI
mRatBN7.21743,217,196 - 43,232,828 (+)NCBI
Rnor_6.01745,247,830 - 45,263,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095714   ⟹   XP_038951642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,917 - 47,928,553 (+)NCBI
mRatBN7.21743,217,196 - 43,232,828 (+)NCBI
RefSeq Acc Id: XM_039095715   ⟹   XP_038951643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,934 - 47,928,553 (+)NCBI
mRatBN7.21743,217,175 - 43,232,828 (+)NCBI
RefSeq Acc Id: XM_039095717   ⟹   XP_038951645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,920,826 - 47,928,553 (+)NCBI
mRatBN7.21743,225,105 - 43,232,828 (+)NCBI
RefSeq Acc Id: XM_039095718   ⟹   XP_038951646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,931 - 47,928,553 (+)NCBI
mRatBN7.21743,217,195 - 43,231,986 (+)NCBI
RefSeq Acc Id: XM_063276448   ⟹   XP_063132518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,917 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276449   ⟹   XP_063132519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,917 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276450   ⟹   XP_063132520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,947 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276451   ⟹   XP_063132521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,884 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276452   ⟹   XP_063132522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,917 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276453   ⟹   XP_063132523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,884 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276454   ⟹   XP_063132524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,917 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276455   ⟹   XP_063132525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,903 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276456   ⟹   XP_063132526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,900 - 47,928,553 (+)NCBI
RefSeq Acc Id: XM_063276457   ⟹   XP_063132527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,912,816 - 47,928,553 (+)NCBI
RefSeq Acc Id: NP_001012053   ⟸   NM_001012053
- UniProtKB: F7DP88 (UniProtKB/TrEMBL),   Q5FVP7 (UniProtKB/TrEMBL),   A6KN76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254161   ⟸   XM_006254099
- Peptide Label: isoform X1
- UniProtKB: F7DP88 (UniProtKB/TrEMBL),   A6KN76 (UniProtKB/TrEMBL),   Q5FVP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254163   ⟸   XM_006254101
- Peptide Label: isoform X1
- UniProtKB: F7DP88 (UniProtKB/TrEMBL),   A6KN76 (UniProtKB/TrEMBL),   Q5FVP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769948   ⟸   XM_008771726
- Peptide Label: isoform X1
- UniProtKB: F7DP88 (UniProtKB/TrEMBL),   A6KN76 (UniProtKB/TrEMBL),   Q5FVP7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072953   ⟸   ENSRNOT00000080655
Ensembl Acc Id: ENSRNOP00000069061   ⟸   ENSRNOT00000081063
RefSeq Acc Id: XP_038951643   ⟸   XM_039095715
- Peptide Label: isoform X1
- UniProtKB: F7DP88 (UniProtKB/TrEMBL),   A6KN76 (UniProtKB/TrEMBL),   Q5FVP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951646   ⟸   XM_039095718
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951642   ⟸   XM_039095714
- Peptide Label: isoform X1
- UniProtKB: F7DP88 (UniProtKB/TrEMBL),   A6KN76 (UniProtKB/TrEMBL),   Q5FVP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951645   ⟸   XM_039095717
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132527   ⟸   XM_063276457
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063132521   ⟸   XM_063276451
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132523   ⟸   XM_063276453
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132526   ⟸   XM_063276456
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063132525   ⟸   XM_063276455
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132519   ⟸   XM_063276449
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132518   ⟸   XM_063276448
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132522   ⟸   XM_063276452
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132524   ⟸   XM_063276454
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132520   ⟸   XM_063276450
- Peptide Label: isoform X1
- UniProtKB: A6KN76 (UniProtKB/TrEMBL),   F7DP88 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVP7-F1-model_v2 AlphaFold Q5FVP7 1-554 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700495
Promoter ID:EPDNEW_R11018
Type:multiple initiation site
Name:Zkscan3_1
Description:zinc finger with KRAB and SCAN domains 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01745,247,782 - 45,247,842EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305753 AgrOrtholog
BioCyc Gene G2FUF-9211 BioCyc
Ensembl Genes ENSRNOG00000055000 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080655.2 UniProtKB/TrEMBL
  ENSRNOT00000081063.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7373658 IMAGE-MGC_LOAD
InterPro GLI_C2H2-zinc-finger UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  SCAN-C2H2_zinc_finger UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Tscrpt_reg_SCAN UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:306977 UniProtKB/TrEMBL
MGC_CLONE MGC:108865 IMAGE-MGC_LOAD
NCBI Gene 306977 ENTREZGENE
PANTHER FEZ FAMILY ZINC FINGER PROTEIN 2 UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 936 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zkscan3 PhenoGen
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055000 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K493_RAT UniProtKB/TrEMBL
  A6KN76 ENTREZGENE, UniProtKB/TrEMBL
  F7DP88 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Zkscan3  zinc finger with KRAB and SCAN domains 3  Zfp307  zinc finger protein 307  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Zfp307  zinc finger protein 307  Zfp307_predicted  zinc finger protein 307 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zfp307_predicted  zinc finger protein 307 (predicted)      Symbol and Name status set to approved 70820 APPROVED