Tmem126a (transmembrane protein 126A) - Rat Genome Database

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Gene: Tmem126a (transmembrane protein 126A) Rattus norvegicus
Analyze
Symbol: Tmem126a
Name: transmembrane protein 126A
RGD ID: 1305677
Description: Predicted to be involved in mitochondrial protein quality control; mitochondrion organization; and optic nerve development. Predicted to act upstream of or within toll-like receptor 4 signaling pathway. Predicted to be located in plasma membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in optic atrophy 7. Orthologous to human TMEM126A (transmembrane protein 126A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC293113; RGD1305677; similar to RIKEN cDNA 1810020E01
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,837,015 - 153,843,192 (-)NCBIGRCr8
GRCr8 Ensembl1153,835,236 - 153,843,160 (-)EnsemblGRCr8 Ensembl
mRatBN7.21144,424,481 - 144,430,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,422,703 - 144,430,628 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,347,274 - 152,353,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,528,451 - 159,534,610 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,402,370 - 152,408,529 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01156,283,105 - 156,291,057 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1156,283,128 - 156,291,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01162,529,113 - 162,537,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41147,129,330 - 147,137,259 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,643,098 - 142,651,027 (-)NCBICelera
RGSC_v3.11147,207,735 - 147,215,665 (-)NCBI
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrial inner membrane  (IEA,ISO,ISS)
mitochondrion  (IBA,IEA,ISO,ISS)
plasma membrane  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:18614015   PMID:19327736  


Genomics

Comparative Map Data
Tmem126a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,837,015 - 153,843,192 (-)NCBIGRCr8
GRCr8 Ensembl1153,835,236 - 153,843,160 (-)EnsemblGRCr8 Ensembl
mRatBN7.21144,424,481 - 144,430,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,422,703 - 144,430,628 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,347,274 - 152,353,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,528,451 - 159,534,610 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,402,370 - 152,408,529 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01156,283,105 - 156,291,057 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1156,283,128 - 156,291,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01162,529,113 - 162,537,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41147,129,330 - 147,137,259 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,643,098 - 142,651,027 (-)NCBICelera
RGSC_v3.11147,207,735 - 147,215,665 (-)NCBI
Cytogenetic Map1q32NCBI
TMEM126A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,647,967 - 85,656,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,647,967 - 85,656,547 (+)EnsemblGRCh38hg38GRCh38
GRCh371185,359,011 - 85,367,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361185,036,693 - 85,045,235 (+)NCBINCBI36Build 36hg18NCBI36
Celera1182,668,277 - 82,676,912 (+)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1181,656,256 - 81,664,891 (+)NCBIHuRef
CHM1_11185,243,754 - 85,252,388 (+)NCBICHM1_1
T2T-CHM13v2.01185,584,644 - 85,593,220 (+)NCBIT2T-CHM13v2.0
Tmem126a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39790,099,908 - 90,106,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl790,099,908 - 90,106,437 (-)EnsemblGRCm39 Ensembl
GRCm38790,450,700 - 90,457,203 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl790,450,700 - 90,457,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv37797,599,222 - 97,605,718 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36790,325,904 - 90,332,400 (-)NCBIMGSCv36mm8
Celera787,778,196 - 87,784,676 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map750.59NCBI
Tmem126a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554147,216,286 - 7,224,475 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554147,214,408 - 7,224,499 (-)NCBIChiLan1.0ChiLan1.0
TMEM126A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2986,567,317 - 86,579,574 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11187,620,767 - 87,630,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,703,855 - 80,712,459 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,312,434 - 84,321,037 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,312,434 - 84,321,037 (+)Ensemblpanpan1.1panPan2
TMEM126A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12113,787,074 - 13,795,779 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2113,787,123 - 13,795,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2113,653,725 - 13,662,471 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02113,967,872 - 13,976,597 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2113,967,464 - 13,976,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12113,756,370 - 13,765,102 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02113,828,697 - 13,837,423 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02113,881,469 - 13,890,217 (-)NCBIUU_Cfam_GSD_1.0
Tmem126a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494771,938,905 - 71,945,739 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649813,538,565 - 13,545,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM126A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl919,576,295 - 19,585,277 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1919,576,241 - 19,585,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2921,846,389 - 21,855,417 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM126A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1176,888,688 - 76,897,883 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl176,888,734 - 76,897,841 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604348,824,623 - 48,833,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem126a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248454,264,497 - 4,272,973 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem126a
58 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:145
Interacting mature miRNAs:182
Transcripts:ENSRNOT00000038333
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1131179947176179947Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)1137611478182611478Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1153679879198679879Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1132760429191848948Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1112521556157521556Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1153679879205813246Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
8694166Bw147Body weight QTL 1476.830.001body mass (VT:0001259)body weight gain (CMO:0000420)1153788989198788989Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1142582336182383862Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1141173126169168317Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1140833106185833106Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131243790176243790Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1132760429191848948Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1153680016182383862Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1153680016183564652Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436178317588Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1112521556157521556Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1111949780160574007Rat
1576310Schws2Schwannoma susceptibility QTL 20.029nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1153788989198788989Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436180021436Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760429191190115Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1132966869206393015Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1140915717185915717Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1132760429191848948Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
7411599Foco11Food consumption QTL 1118.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1153788989198788989Rat

Markers in Region
RH128303  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map13113.3UniSTS
Cytogenetic Map1q32UniSTS
RH141969  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,422,352 - 144,422,539 (-)MAPPERmRatBN7.2
Rnor_6.01156,291,216 - 156,291,402NCBIRnor6.0
Rnor_5.01162,537,338 - 162,537,524UniSTSRnor5.0
RGSC_v3.41147,128,985 - 147,129,171UniSTSRGSC3.4
Celera1142,642,753 - 142,642,939UniSTS
RH 3.4 Map11129.0UniSTS
Cytogenetic Map1q32UniSTS
AA893197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,423,058 - 144,423,266 (-)MAPPERmRatBN7.2
Rnor_6.01156,290,489 - 156,290,696NCBIRnor6.0
Rnor_5.01162,536,611 - 162,536,818UniSTSRnor5.0
RGSC_v3.41147,129,691 - 147,129,898UniSTSRGSC3.4
Celera1142,643,459 - 142,643,666UniSTS
RH 3.4 Map11129.1UniSTS
Cytogenetic Map1q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000038333   ⟹   ENSRNOP00000032681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1153,835,236 - 153,843,160 (-)Ensembl
mRatBN7.2 Ensembl1144,422,703 - 144,430,628 (-)Ensembl
Rnor_6.0 Ensembl1156,283,128 - 156,291,052 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099863   ⟹   ENSRNOP00000082513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,422,703 - 144,429,770 (-)Ensembl
RefSeq Acc Id: NM_001011557   ⟹   NP_001011557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,837,015 - 153,843,179 (-)NCBI
mRatBN7.21144,424,482 - 144,430,647 (-)NCBI
Rnor_6.01156,283,128 - 156,291,057 (+)NCBI
Rnor_5.01162,529,113 - 162,537,179 (+)NCBI
RGSC_v3.41147,129,330 - 147,137,259 (-)RGD
Celera1142,643,098 - 142,651,027 (-)RGD
Sequence:
RefSeq Acc Id: XM_006229689   ⟹   XP_006229751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,837,015 - 153,843,192 (-)NCBI
mRatBN7.21144,424,481 - 144,430,730 (-)NCBI
Rnor_6.01156,283,105 - 156,289,275 (+)NCBI
Rnor_5.01162,529,113 - 162,537,179 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001011557   ⟸   NM_001011557
- UniProtKB: Q5HZA9 (UniProtKB/Swiss-Prot),   A6I639 (UniProtKB/TrEMBL),   A0A8I5ZU95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229751   ⟸   XM_006229689
- Peptide Label: isoform X1
- UniProtKB: Q5HZA9 (UniProtKB/Swiss-Prot),   A6I639 (UniProtKB/TrEMBL),   A0A8I5ZU95 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032681   ⟸   ENSRNOT00000038333
Ensembl Acc Id: ENSRNOP00000082513   ⟸   ENSRNOT00000099863

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5HZA9-F1-model_v2 AlphaFold Q5HZA9 1-196 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690190
Promoter ID:EPDNEW_R715
Type:multiple initiation site
Name:Tmem126a_1
Description:transmembrane protein 126A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01156,283,107 - 156,283,167EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305677 AgrOrtholog
BioCyc Gene G2FUF-58527 BioCyc
Ensembl Genes ENSRNOG00000022748 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000038333 ENTREZGENE
  ENSRNOT00000038333.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7307750 IMAGE-MGC_LOAD
InterPro TMEM126 UniProtKB/Swiss-Prot
KEGG Report rno:293113 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105688 IMAGE-MGC_LOAD
NCBI Gene 293113 ENTREZGENE
PANTHER PTHR16296 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 126A UniProtKB/Swiss-Prot
Pfam TMEM126 UniProtKB/Swiss-Prot
PhenoGen Tmem126a PhenoGen
RatGTEx ENSRNOG00000022748 RatGTEx
UniProt A0A8I5ZU95 ENTREZGENE, UniProtKB/TrEMBL
  A6I639 ENTREZGENE, UniProtKB/TrEMBL
  Q5HZA9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Tmem126a  transmembrane protein 126A  RGD1305677  similar to RIKEN cDNA 1810020E01  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305677  similar to RIKEN cDNA 1810020E01  RGD1305677_predicted  similar to RIKEN cDNA 1810020E01 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305677_predicted  similar to RIKEN cDNA 1810020E01 (predicted)  LOC293113_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC293113_predicted  similar to RIKEN cDNA 1810020E01 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL