Armc9 (armadillo repeat containing 9) - Rat Genome Database

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Gene: Armc9 (armadillo repeat containing 9) Rattus norvegicus
Analyze
Symbol: Armc9
Name: armadillo repeat containing 9
RGD ID: 1305615
Description: Predicted to be involved in cilium assembly and positive regulation of smoothened signaling pathway. Predicted to be located in cilium. Predicted to be active in centriole; ciliary basal body; and ciliary tip. Human ortholog(s) of this gene implicated in Joubert syndrome 30. Orthologous to human ARMC9 (armadillo repeat containing 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: lisH domain-containing protein ARMC9; LOC301579; RGD1305615; similar to RIKEN cDNA 4930438O05
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,250,492 - 94,376,589 (+)NCBIGRCr8
mRatBN7.2986,802,791 - 86,928,611 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,802,868 - 86,928,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,220,856 - 95,346,572 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,349,346 - 100,475,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,731,172 - 98,856,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,172,718 - 93,299,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,172,673 - 93,296,750 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,901,738 - 93,029,061 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,949,896 - 85,040,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1985,133,315 - 85,203,369 (+)NCBI
Celera984,223,640 - 84,349,427 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IBA,IEA,ISO,ISS)
ciliary basal body  (IBA,IEA,ISO,ISS)
ciliary tip  (IBA,IEA,ISO,ISS)
cilium  (ISO,ISS)
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19056867   PMID:28625504   PMID:29459677  


Genomics

Comparative Map Data
Armc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,250,492 - 94,376,589 (+)NCBIGRCr8
mRatBN7.2986,802,791 - 86,928,611 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,802,868 - 86,928,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,220,856 - 95,346,572 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,349,346 - 100,475,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,731,172 - 98,856,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,172,718 - 93,299,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,172,673 - 93,296,750 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,901,738 - 93,029,061 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,949,896 - 85,040,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1985,133,315 - 85,203,369 (+)NCBI
Celera984,223,640 - 84,349,427 (+)NCBICelera
Cytogenetic Map9q35NCBI
ARMC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,198,631 - 231,376,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,198,546 - 231,376,848 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,063,345 - 232,241,559 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,771,586 - 231,918,158 (+)NCBINCBI36Build 36hg18NCBI36
Celera2225,838,840 - 225,986,283 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2223,905,333 - 224,079,892 (+)NCBIHuRef
CHM1_12232,068,741 - 232,244,425 (+)NCBICHM1_1
T2T-CHM13v2.02231,683,119 - 231,861,312 (+)NCBIT2T-CHM13v2.0
Armc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,082,436 - 86,207,491 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,082,502 - 86,206,006 (+)EnsemblGRCm39 Ensembl
GRCm38186,154,729 - 86,278,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,154,780 - 86,278,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,051,355 - 88,174,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36187,985,963 - 88,109,455 (+)NCBIMGSCv36mm8
Celera189,120,275 - 89,246,607 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
Armc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,203,941 - 4,294,548 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,202,540 - 4,294,548 (-)NCBIChiLan1.0ChiLan1.0
ARMC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213133,825,093 - 134,015,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B133,840,041 - 134,030,054 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,454,310 - 118,644,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,243,120 - 237,438,796 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B237,243,120 - 237,412,620 (+)Ensemblpanpan1.1panPan2
ARMC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,117,272 - 43,264,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2543,110,182 - 43,292,123 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,677,561 - 43,824,074 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,374,305 - 43,522,462 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,374,358 - 43,522,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,302,605 - 43,450,077 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,145,863 - 43,293,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,300,930 - 43,448,386 (+)NCBIUU_Cfam_GSD_1.0
Armc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,291,566 - 185,423,532 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365255,514,521 - 5,648,074 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365255,518,691 - 5,648,109 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15131,928,719 - 132,101,343 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115131,928,642 - 132,101,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,647,295 - 145,810,439 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,225,992 - 117,407,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10117,233,990 - 117,408,348 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604082,038,371 - 82,217,851 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Armc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,486,762 - 4,573,553 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248434,483,974 - 4,588,546 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Armc9
306 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:917
Count of miRNA genes:322
Interacting mature miRNAs:411
Transcripts:ENSRNOT00000066934
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat

Markers in Region
RH136736  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,834,835 - 86,834,957 (+)MAPPERmRatBN7.2
Rnor_6.0993,205,092 - 93,205,213NCBIRnor6.0
Rnor_5.0992,934,112 - 92,934,233UniSTSRnor5.0
RGSC_v3.4984,946,061 - 84,946,182UniSTSRGSC3.4
Celera984,255,599 - 84,255,720UniSTS
Cytogenetic Map9q35UniSTS
RH133226  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,908,437 - 86,908,656 (+)MAPPERmRatBN7.2
Rnor_6.0993,278,709 - 93,278,927NCBIRnor6.0
Rnor_5.0993,008,739 - 93,008,957UniSTSRnor5.0
RGSC_v3.4985,019,634 - 85,019,852UniSTSRGSC3.4
Celera984,329,054 - 84,329,272UniSTS
Cytogenetic Map9q35UniSTS
RH137929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,927,017 - 86,927,189 (+)MAPPERmRatBN7.2
Rnor_6.0993,297,277 - 93,297,448NCBIRnor6.0
Rnor_5.0993,027,219 - 93,027,390UniSTSRnor5.0
RGSC_v3.4985,038,459 - 85,038,630UniSTSRGSC3.4
Celera984,347,585 - 84,347,756UniSTS
Cytogenetic Map9q35UniSTS
RH138402  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,915,689 - 86,915,938 (+)MAPPERmRatBN7.2
Rnor_6.0993,285,955 - 93,286,203NCBIRnor6.0
Rnor_5.0993,015,897 - 93,016,145UniSTSRnor5.0
RGSC_v3.4985,027,137 - 85,027,385UniSTSRGSC3.4
Celera984,336,263 - 84,336,511UniSTS
Cytogenetic Map9q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC128749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066934   ⟹   ENSRNOP00000059344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,802,868 - 86,914,787 (+)Ensembl
Rnor_6.0 Ensembl993,176,091 - 93,296,750 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088525   ⟹   ENSRNOP00000075022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,802,868 - 86,928,606 (+)Ensembl
Rnor_6.0 Ensembl993,172,673 - 93,273,688 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103746   ⟹   ENSRNOP00000094882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,808,420 - 86,910,863 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105720   ⟹   ENSRNOP00000093397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,802,868 - 86,928,606 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117592   ⟹   ENSRNOP00000093331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,802,883 - 86,928,860 (+)Ensembl
RefSeq Acc Id: NM_001109663   ⟹   NP_001103133
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,859 - 94,376,589 (+)NCBI
mRatBN7.2986,802,858 - 86,928,611 (+)NCBI
Rnor_6.0993,172,718 - 93,299,119 (+)NCBI
Rnor_5.0992,901,738 - 93,029,061 (+)NCBI
RGSC_v3.4984,949,896 - 85,040,301 (+)RGD
Celera984,223,640 - 84,349,427 (+)RGD
Sequence:
RefSeq Acc Id: NM_001398574   ⟹   NP_001385503
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,859 - 94,376,589 (+)NCBI
mRatBN7.2986,802,858 - 86,928,611 (+)NCBI
RefSeq Acc Id: NM_001398575   ⟹   NP_001385504
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,859 - 94,351,382 (+)NCBI
mRatBN7.2986,802,858 - 86,903,393 (+)NCBI
RefSeq Acc Id: XM_039083408   ⟹   XP_038939336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,376,589 (+)NCBI
mRatBN7.2986,802,791 - 86,928,611 (+)NCBI
RefSeq Acc Id: XM_039083409   ⟹   XP_038939337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,376,589 (+)NCBI
mRatBN7.2986,802,791 - 86,928,611 (+)NCBI
RefSeq Acc Id: XM_039083411   ⟹   XP_038939339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
mRatBN7.2986,802,791 - 86,916,084 (+)NCBI
RefSeq Acc Id: XM_039083412   ⟹   XP_038939340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,366,711 (+)NCBI
mRatBN7.2986,802,792 - 86,921,072 (+)NCBI
RefSeq Acc Id: XM_039083414   ⟹   XP_038939342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,828 - 94,376,589 (+)NCBI
mRatBN7.2986,802,821 - 86,928,611 (+)NCBI
RefSeq Acc Id: XM_039083415   ⟹   XP_038939343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
mRatBN7.2986,802,792 - 86,916,084 (+)NCBI
RefSeq Acc Id: XM_039083416   ⟹   XP_038939344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
mRatBN7.2986,802,792 - 86,916,084 (+)NCBI
RefSeq Acc Id: XM_039083417   ⟹   XP_038939345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,356,752 (+)NCBI
mRatBN7.2986,802,792 - 86,911,125 (+)NCBI
RefSeq Acc Id: XM_039083418   ⟹   XP_038939346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,275,681 - 94,376,589 (+)NCBI
mRatBN7.2986,830,707 - 86,928,611 (+)NCBI
RefSeq Acc Id: XM_063267028   ⟹   XP_063123098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
RefSeq Acc Id: XM_063267029   ⟹   XP_063123099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
RefSeq Acc Id: XM_063267030   ⟹   XP_063123100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,366,711 (+)NCBI
RefSeq Acc Id: XM_063267031   ⟹   XP_063123101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,366,711 (+)NCBI
RefSeq Acc Id: XM_063267032   ⟹   XP_063123102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,366,711 (+)NCBI
RefSeq Acc Id: XM_063267033   ⟹   XP_063123103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
RefSeq Acc Id: XM_063267034   ⟹   XP_063123104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,830 - 94,376,589 (+)NCBI
RefSeq Acc Id: XM_063267035   ⟹   XP_063123105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,362,772 (+)NCBI
RefSeq Acc Id: XM_063267037   ⟹   XP_063123107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,250,492 - 94,356,752 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001103133 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385503 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939336 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939337 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939345 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939346 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123098 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123099 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123100 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123101 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123102 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123103 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123104 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123105 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123107 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1A5P5 (Get FASTA)   NCBI Sequence Viewer  
  AAI28750 (Get FASTA)   NCBI Sequence Viewer  
  EDL75571 (Get FASTA)   NCBI Sequence Viewer  
  EDL75572 (Get FASTA)   NCBI Sequence Viewer  
  EDL75573 (Get FASTA)   NCBI Sequence Viewer  
  EDL75574 (Get FASTA)   NCBI Sequence Viewer  
  EDL75575 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059344.4
  ENSRNOP00000075022.2
  ENSRNOP00000093331.1
  ENSRNOP00000093397.1
  ENSRNOP00000094882.1
RefSeq Acc Id: NP_001103133   ⟸   NM_001109663
- Peptide Label: isoform 1
- UniProtKB: A6JWG3 (UniProtKB/TrEMBL),   A0A8I6GK98 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059344   ⟸   ENSRNOT00000066934
Ensembl Acc Id: ENSRNOP00000075022   ⟸   ENSRNOT00000088525
RefSeq Acc Id: XP_038939336   ⟸   XM_039083408
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939337   ⟸   XM_039083409
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GK98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939339   ⟸   XM_039083411
- Peptide Label: isoform X3
- UniProtKB: F1M3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939340   ⟸   XM_039083412
- Peptide Label: isoform X6
- UniProtKB: A1A5P5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038939343   ⟸   XM_039083415
- Peptide Label: isoform X11
- UniProtKB: F1M3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939344   ⟸   XM_039083416
- Peptide Label: isoform X15
- UniProtKB: F1M3U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939345   ⟸   XM_039083417
- Peptide Label: isoform X16
- UniProtKB: A6JWG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939342   ⟸   XM_039083414
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GK98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939346   ⟸   XM_039083418
- Peptide Label: isoform X18
Ensembl Acc Id: ENSRNOP00000094882   ⟸   ENSRNOT00000103746
Ensembl Acc Id: ENSRNOP00000093331   ⟸   ENSRNOT00000117592
Ensembl Acc Id: ENSRNOP00000093397   ⟸   ENSRNOT00000105720
RefSeq Acc Id: NP_001385503   ⟸   NM_001398574
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AFM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385504   ⟸   NM_001398575
- Peptide Label: isoform 3
RefSeq Acc Id: XP_063123100   ⟸   XM_063267030
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063123101   ⟸   XM_063267031
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063123102   ⟸   XM_063267032
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K9J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123098   ⟸   XM_063267028
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123103   ⟸   XM_063267033
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063123105   ⟸   XM_063267035
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063123099   ⟸   XM_063267029
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123107   ⟸   XM_063267037
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063123104   ⟸   XM_063267034
- Peptide Label: isoform X13
Protein Domains
LisH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1A5P5-F1-model_v2 AlphaFold A1A5P5 1-730 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696832
Promoter ID:EPDNEW_R7345
Type:initiation region
Name:Armc9_1
Description:armadillo repeat containing 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0993,172,736 - 93,172,796EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305615 AgrOrtholog
BioCyc Gene G2FUF-26904 BioCyc
Ensembl Genes ENSRNOG00000025418 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066934.4 UniProtKB/TrEMBL
  ENSRNOT00000088525.2 UniProtKB/TrEMBL
  ENSRNOT00000103746.1 UniProtKB/TrEMBL
  ENSRNOT00000105720.1 UniProtKB/TrEMBL
  ENSRNOT00000117592.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7099560 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9_ARM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9_LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:301579 UniProtKB/TrEMBL
MGC_CLONE MGC:156700 IMAGE-MGC_LOAD
NCBI Gene 301579 ENTREZGENE
PANTHER LISH DOMAIN-CONTAINING PROTEIN ARMC9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14881 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ARMC9_ARM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9_LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Armc9 PhenoGen
PROSITE LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025418 RatGTEx
SMART LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K9J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKG5_RAT UniProtKB/TrEMBL
  A0A8I6GK98 ENTREZGENE, UniProtKB/TrEMBL
  A1A5P5 ENTREZGENE
  A6JWG3 ENTREZGENE, UniProtKB/TrEMBL
  A6JWG5 ENTREZGENE, UniProtKB/TrEMBL
  ARMC9_RAT UniProtKB/Swiss-Prot
  F1M3U9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Armc9  armadillo repeat containing 9   Armc9_predicted  armadillo repeat containing 9 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Armc9_predicted  armadillo repeat containing 9 (predicted)  RGD1305615_predicted  similar to RIKEN cDNA 4930438O05 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305615_predicted  similar to RIKEN cDNA 4930438O05 (predicted)  LOC301579_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC301579_predicted  similar to RIKEN cDNA 4930438O05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL