Satb1 (SATB homeobox 1) - Rat Genome Database

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Gene: Satb1 (SATB homeobox 1) Rattus norvegicus
Analyze
Symbol: Satb1
Name: SATB homeobox 1
RGD ID: 1305561
Description: Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in chromatin remodeling and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including T cell activation; negative regulation of transcription by RNA polymerase II; and reflex. Predicted to be located in PML body and nuclear matrix. Predicted to be part of heterochromatin. Orthologous to human SATB1 (SATB homeobox 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-binding protein SATB1; LOC316164; special AT-rich sequence binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr894,916,958 - 5,010,359 (-)NCBIGRCr8
mRatBN7.294,677,817 - 4,773,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl94,680,920 - 4,753,251 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx95,873,936 - 5,946,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0911,045,778 - 11,117,946 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0910,178,871 - 10,251,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.092,181,135 - 2,277,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl92,190,915 - 2,274,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.092,129,797 - 2,224,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.493,307,651 - 3,391,348 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.193,307,650 - 3,391,345 (+)NCBI
Celera91,577,500 - 1,650,421 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetazolamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antimycin A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenpyroximate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hydroquinone  (ISO)
lead(0)  (ISO)
mercaptopurine  (EXP)
methimazole  (EXP)
methylmercury chloride  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
picoxystrobin  (ISO)
potassium chromate  (ISO)
purine-6-thiol  (EXP)
pyrimidifen  (ISO)
retinyl acetate  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thifluzamide  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP,ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8114718   PMID:10716941   PMID:12477932   PMID:12692553   PMID:15814699   PMID:15851481   PMID:18408014   PMID:21930775   PMID:25896016   PMID:29506055   PMID:30024617   PMID:33011339  
PMID:35608610  


Genomics

Comparative Map Data
Satb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr894,916,958 - 5,010,359 (-)NCBIGRCr8
mRatBN7.294,677,817 - 4,773,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl94,680,920 - 4,753,251 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx95,873,936 - 5,946,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0911,045,778 - 11,117,946 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0910,178,871 - 10,251,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.092,181,135 - 2,277,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl92,190,915 - 2,274,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.092,129,797 - 2,224,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.493,307,651 - 3,391,348 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.193,307,650 - 3,391,345 (+)NCBI
Celera91,577,500 - 1,650,421 (-)NCBICelera
Cytogenetic Map9q11NCBI
SATB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38318,345,377 - 18,445,592 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl318,345,377 - 18,445,621 (-)EnsemblGRCh38hg38GRCh38
GRCh37318,386,869 - 18,487,084 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36318,364,438 - 18,440,344 (-)NCBINCBI36Build 36hg18NCBI36
Build 34318,364,438 - 18,440,344NCBI
Celera318,327,413 - 18,424,451 (-)NCBICelera
Cytogenetic Map3p24.3NCBI
HuRef318,323,695 - 18,414,820 (-)NCBIHuRef
CHM1_1318,342,029 - 18,433,152 (-)NCBICHM1_1
T2T-CHM13v2.0318,347,503 - 18,447,703 (-)NCBIT2T-CHM13v2.0
Satb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391752,043,215 - 52,140,318 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1752,043,215 - 52,140,318 (-)EnsemblGRCm39 Ensembl
GRCm381751,736,187 - 51,833,290 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1751,736,187 - 51,833,290 (-)EnsemblGRCm38mm10GRCm38
MGSCv371751,875,512 - 51,972,615 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361751,204,398 - 51,297,562 (-)NCBIMGSCv36mm8
Celera1755,200,882 - 55,296,979 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1726.81NCBI
Satb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543010,587,539 - 10,683,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543010,587,539 - 10,683,887 (-)NCBIChiLan1.0ChiLan1.0
SATB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2218,329,857 - 18,428,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1318,334,623 - 18,433,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0318,267,819 - 18,368,924 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1318,602,204 - 18,700,696 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl318,602,204 - 18,681,211 (-)Ensemblpanpan1.1panPan2
SATB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12324,614,198 - 24,692,254 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2324,593,489 - 24,690,977 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2324,628,318 - 24,729,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02325,080,231 - 25,182,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2325,080,226 - 25,179,312 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12324,802,248 - 24,903,924 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02324,862,371 - 24,964,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02325,107,820 - 25,209,575 (+)NCBIUU_Cfam_GSD_1.0
Satb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118177,766,685 - 177,862,478 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647310,904,989 - 11,001,051 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647310,906,059 - 11,001,007 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SATB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl135,314,148 - 5,417,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1135,315,985 - 5,410,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2136,018,336 - 6,115,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SATB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11563,163,989 - 63,263,122 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1563,170,243 - 63,263,149 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604136,170,384 - 36,269,846 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Satb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248213,726,355 - 3,800,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248213,723,609 - 3,820,921 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Satb1
483 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:449
Count of miRNA genes:237
Interacting mature miRNAs:281
Transcripts:ENSRNOT00000017556
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat

Markers in Region
U05252  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.294,681,268 - 4,681,425 (-)MAPPERmRatBN7.2
Rnor_6.092,274,328 - 2,274,484NCBIRnor6.0
Rnor_5.092,221,688 - 2,221,844UniSTSRnor5.0
RGSC_v3.493,391,044 - 3,391,200UniSTSRGSC3.4
Celera91,577,648 - 1,577,804UniSTS
Cytogenetic Map9q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 18 2 19 2 8 11 74 18 33 11 8
Low 1 17 36 36 36 17 8
Below cutoff 3 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC085814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000017556   ⟹   ENSRNOP00000017557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl94,680,920 - 4,753,251 (-)Ensembl
Rnor_6.0 Ensembl92,202,511 - 2,274,629 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077417   ⟹   ENSRNOP00000070853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl94,680,920 - 4,753,251 (-)Ensembl
Rnor_6.0 Ensembl92,190,915 - 2,272,687 (+)Ensembl
RefSeq Acc Id: NM_001012129   ⟹   NP_001012129
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,917,796 - 4,989,925 (-)NCBI
mRatBN7.294,681,121 - 4,753,251 (-)NCBI
Rnor_6.092,202,511 - 2,274,632 (+)NCBI
Rnor_5.092,129,797 - 2,224,329 (+)NCBI
RGSC_v3.493,307,651 - 3,391,348 (+)RGD
Celera91,577,500 - 1,650,421 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244219   ⟹   XP_006244281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 4,990,285 (-)NCBI
mRatBN7.294,680,283 - 4,753,160 (-)NCBI
Rnor_6.092,202,396 - 2,277,949 (+)NCBI
Rnor_5.092,129,797 - 2,224,329 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083475   ⟹   XP_038939403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 4,990,285 (-)NCBI
mRatBN7.294,680,283 - 4,753,160 (-)NCBI
RefSeq Acc Id: XM_039083476   ⟹   XP_038939404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,749 (-)NCBI
mRatBN7.294,680,283 - 4,773,061 (-)NCBI
RefSeq Acc Id: XM_039083478   ⟹   XP_038939406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,000,038 (-)NCBI
mRatBN7.294,677,817 - 4,761,541 (-)NCBI
RefSeq Acc Id: XM_039083479   ⟹   XP_038939407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 4,989,819 (-)NCBI
mRatBN7.294,680,283 - 4,753,145 (-)NCBI
RefSeq Acc Id: XM_039083480   ⟹   XP_038939408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 4,990,285 (-)NCBI
mRatBN7.294,680,283 - 4,753,160 (-)NCBI
RefSeq Acc Id: XM_039083481   ⟹   XP_038939409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 4,990,285 (-)NCBI
mRatBN7.294,680,283 - 4,753,160 (-)NCBI
RefSeq Acc Id: XM_063267068   ⟹   XP_063123138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,768 (-)NCBI
RefSeq Acc Id: XM_063267069   ⟹   XP_063123139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 4,990,285 (-)NCBI
RefSeq Acc Id: XM_063267070   ⟹   XP_063123140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,768 (-)NCBI
RefSeq Acc Id: XM_063267071   ⟹   XP_063123141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,768 (-)NCBI
RefSeq Acc Id: XM_063267072   ⟹   XP_063123142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,771 (-)NCBI
RefSeq Acc Id: XM_063267073   ⟹   XP_063123143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,000,038 (-)NCBI
RefSeq Acc Id: XM_063267074   ⟹   XP_063123144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,010,347 (-)NCBI
RefSeq Acc Id: XM_063267075   ⟹   XP_063123145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,826 (-)NCBI
RefSeq Acc Id: XM_063267076   ⟹   XP_063123146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,768 (-)NCBI
RefSeq Acc Id: XM_063267077   ⟹   XP_063123147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,009,768 (-)NCBI
RefSeq Acc Id: XM_063267078   ⟹   XP_063123148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,000,038 (-)NCBI
RefSeq Acc Id: XM_063267079   ⟹   XP_063123149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,010,359 (-)NCBI
RefSeq Acc Id: XM_063267080   ⟹   XP_063123150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr894,916,958 - 5,003,610 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001012129 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244281 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939409 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123138 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123139 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123140 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123141 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123142 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123143 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123144 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123145 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123146 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123147 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123148 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123149 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123150 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85814 (Get FASTA)   NCBI Sequence Viewer  
  EDL83029 (Get FASTA)   NCBI Sequence Viewer  
  EDL83030 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017557
  ENSRNOP00000017557.4
  ENSRNOP00000070853
  ENSRNOP00000070853.2
RefSeq Acc Id: NP_001012129   ⟸   NM_001012129
- UniProtKB: Q5U2Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244281   ⟸   XM_006244219
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYZ8 (UniProtKB/TrEMBL),   A6KPP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070853   ⟸   ENSRNOT00000077417
RefSeq Acc Id: ENSRNOP00000017557   ⟸   ENSRNOT00000017556
RefSeq Acc Id: XP_038939406   ⟸   XM_039083478
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939404   ⟸   XM_039083476
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939409   ⟸   XM_039083481
- Peptide Label: isoform X5
- UniProtKB: F7ENV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939408   ⟸   XM_039083480
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038939403   ⟸   XM_039083475
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939407   ⟸   XM_039083479
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123149   ⟸   XM_063267079
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123144   ⟸   XM_063267074
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123145   ⟸   XM_063267075
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123142   ⟸   XM_063267072
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123146   ⟸   XM_063267076
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123140   ⟸   XM_063267070
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123138   ⟸   XM_063267068
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123147   ⟸   XM_063267077
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123141   ⟸   XM_063267071
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123150   ⟸   XM_063267080
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123148   ⟸   XM_063267078
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123143   ⟸   XM_063267073
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123139   ⟸   XM_063267069
- Peptide Label: isoform X3
Protein Domains
CUT   CUTL   Homeobox   ULD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2Y2-F1-model_v2 AlphaFold Q5U2Y2 1-764 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696419
Promoter ID:EPDNEW_R6944
Type:single initiation site
Name:Satb1_1
Description:SATB homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.092,202,430 - 2,202,490EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305561 AgrOrtholog
BioCyc Gene G2FUF-28418 BioCyc
Ensembl Genes ENSRNOG00000012942 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017556.7 UniProtKB/TrEMBL
  ENSRNOT00000077417.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  1.10.260.70 UniProtKB/TrEMBL
  3.10.20.710 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123102 IMAGE-MGC_LOAD
InterPro CUTL UniProtKB/TrEMBL
  Hmoeo_CUT UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  Lambda_DNA-bd UniProtKB/TrEMBL
  SATB1/SATB2 UniProtKB/TrEMBL
  SATB_CUTL_sf UniProtKB/TrEMBL
  SATB_ULD_sf UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
KEGG Report rno:316164 UniProtKB/TrEMBL
MGC_CLONE MGC:94048 IMAGE-MGC_LOAD
NCBI Gene 316164 ENTREZGENE
PANTHER DNA-BINDING PROTEIN SATB1 UniProtKB/TrEMBL
  PTHR15116 UniProtKB/TrEMBL
Pfam CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
PhenoGen Satb1 PhenoGen
PROSITE CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012942 RatGTEx
SMART CUT UniProtKB/TrEMBL
  HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Lambda_like_DNA UniProtKB/TrEMBL
UniProt A0A0G2JYZ8 ENTREZGENE, UniProtKB/TrEMBL
  A6KPP7 ENTREZGENE, UniProtKB/TrEMBL
  F7ENV6 ENTREZGENE, UniProtKB/TrEMBL
  Q5U2Y2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Satb1  SATB homeobox 1  Satb1  special AT-rich sequence binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Satb1  special AT-rich sequence binding protein 1  Satb1_predicted  special AT-rich sequence binding protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Satb1_predicted  special AT-rich sequence binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED