Gpbp1 (GC-rich promoter binding protein 1) - Rat Genome Database

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Gene: Gpbp1 (GC-rich promoter binding protein 1) Rattus norvegicus
Analyze
Symbol: Gpbp1
Name: GC-rich promoter binding protein 1
RGD ID: 1305492
Description: Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within DNA-templated transcription and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; intracellular membrane-bounded organelle; and plasma membrane. Predicted to be active in nucleus. Orthologous to human GPBP1 (GC-rich promoter binding protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC294734; RGD1305492; similar to RIKEN cDNA 1700034P14; vasculin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2243,023,504 - 43,091,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl243,023,504 - 43,090,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx250,138,349 - 50,204,256 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0248,196,813 - 48,262,719 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0243,048,332 - 43,114,247 (-)NCBIRnor_WKY
Rnor_6.0243,002,041 - 43,070,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl243,002,044 - 43,068,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0262,047,275 - 62,115,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4242,751,497 - 42,800,922 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1242,671,862 - 42,702,633 (-)NCBI
Celera238,808,458 - 38,874,557 (-)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14612417   PMID:22993404  


Genomics

Comparative Map Data
Gpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2243,023,504 - 43,091,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl243,023,504 - 43,090,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx250,138,349 - 50,204,256 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0248,196,813 - 48,262,719 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0243,048,332 - 43,114,247 (-)NCBIRnor_WKY
Rnor_6.0243,002,041 - 43,070,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl243,002,044 - 43,068,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0262,047,275 - 62,115,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4242,751,497 - 42,800,922 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1242,671,862 - 42,702,633 (-)NCBI
Celera238,808,458 - 38,874,557 (-)NCBICelera
Cytogenetic Map2q14NCBI
GPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38557,174,059 - 57,264,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl557,173,948 - 57,264,679 (+)EnsemblGRCh38hg38GRCh38
GRCh37556,469,886 - 56,560,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36556,505,701 - 56,594,666 (+)NCBINCBI36Build 36hg18NCBI36
Celera553,424,015 - 53,515,385 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef553,441,632 - 53,533,047 (+)NCBIHuRef
CHM1_1556,472,980 - 56,563,579 (+)NCBICHM1_1
T2T-CHM13v2.0558,002,364 - 58,093,366 (+)NCBIT2T-CHM13v2.0
Gpbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913111,562,214 - 111,626,661 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13111,562,214 - 111,626,645 (-)EnsemblGRCm39 Ensembl
GRCm3813111,425,680 - 111,490,128 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13111,425,680 - 111,490,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713112,215,888 - 112,280,249 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613112,546,560 - 112,610,717 (-)NCBIMGSCv36mm8
Celera13115,738,989 - 115,803,291 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
Gpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544610,682,143 - 10,741,377 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544610,685,476 - 10,741,375 (-)NCBIChiLan1.0ChiLan1.0
GPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1558,373,217 - 58,463,712 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl558,373,217 - 58,463,580 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0556,741,133 - 56,831,009 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1244,243,833 - 44,316,498 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl244,246,288 - 44,316,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha241,305,115 - 41,377,938 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0244,725,539 - 44,798,552 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl244,725,818 - 44,801,357 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1241,801,788 - 41,874,299 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0242,606,077 - 42,678,615 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0243,425,746 - 43,498,621 (+)NCBIUU_Cfam_GSD_1.0
Gpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213201,782,394 - 201,849,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648010,719,487 - 10,786,310 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648010,718,992 - 10,786,347 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1636,217,261 - 36,297,818 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11636,217,235 - 36,298,007 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21638,490,108 - 38,570,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1453,408,272 - 53,495,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl453,444,677 - 53,498,155 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660492,312,243 - 2,400,256 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247591,992,747 - 2,060,590 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpbp1
384 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:87
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000036658
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat

Markers in Region
WI-21467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,024,035 - 43,024,288 (+)MAPPERmRatBN7.2
Rnor_6.0243,002,573 - 43,002,825NCBIRnor6.0
Rnor_5.0262,047,807 - 62,048,059UniSTSRnor5.0
RGSC_v3.4242,752,026 - 42,752,278UniSTSRGSC3.4
Celera238,808,987 - 38,809,239UniSTS
Cytogenetic Map2q14UniSTS
AA957560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,023,522 - 43,023,717 (+)MAPPERmRatBN7.2
Rnor_6.0243,002,060 - 43,002,254NCBIRnor6.0
Rnor_5.0262,047,294 - 62,047,488UniSTSRnor5.0
RGSC_v3.4242,751,513 - 42,751,707UniSTSRGSC3.4
Celera238,808,474 - 38,808,668UniSTS
RH 3.4 Map2205.9UniSTS
Cytogenetic Map2q14UniSTS
RH135164  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,088,654 - 43,088,858 (+)MAPPERmRatBN7.2
Rnor_6.0243,067,745 - 43,067,948NCBIRnor6.0
Rnor_5.0262,113,626 - 62,113,829UniSTSRnor5.0
RGSC_v3.4242,799,990 - 42,800,193UniSTSRGSC3.4
Celera238,873,625 - 38,873,828UniSTS
RH 3.4 Map2206.9UniSTS
Cytogenetic Map2q14UniSTS
RH124303  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,089,428 - 43,089,540 (+)MAPPERmRatBN7.2
Rnor_6.0243,068,519 - 43,068,630NCBIRnor6.0
Rnor_5.0262,114,400 - 62,114,511UniSTSRnor5.0
RGSC_v3.4242,800,764 - 42,800,875UniSTSRGSC3.4
Celera238,874,399 - 38,874,510UniSTS
Cytogenetic Map2q14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 41 11 8
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC161907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ013734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000036658   ⟹   ENSRNOP00000038526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl243,023,658 - 43,090,907 (-)Ensembl
Rnor_6.0 Ensembl243,002,044 - 43,068,677 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090616   ⟹   ENSRNOP00000073461
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl243,023,504 - 43,090,893 (-)Ensembl
Rnor_6.0 Ensembl243,002,532 - 43,067,956 (-)Ensembl
RefSeq Acc Id: NM_001106410   ⟹   NP_001099880
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,507 - 43,089,587 (-)NCBI
Rnor_6.0243,002,044 - 43,068,677 (-)NCBI
Rnor_5.0262,047,275 - 62,115,979 (-)NCBI
RGSC_v3.4242,751,497 - 42,800,922 (-)RGD
Celera238,808,458 - 38,874,557 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231921   ⟹   XP_006231983
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,091,146 (-)NCBI
Rnor_6.0243,002,041 - 43,070,236 (-)NCBI
Rnor_5.0262,047,275 - 62,115,979 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231922   ⟹   XP_006231984
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,091,146 (-)NCBI
Rnor_6.0243,002,041 - 43,070,236 (-)NCBI
Rnor_5.0262,047,275 - 62,115,979 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590708   ⟹   XP_017446197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,091,146 (-)NCBI
Rnor_6.0243,002,041 - 43,070,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590709   ⟹   XP_017446198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,091,146 (-)NCBI
Rnor_6.0243,002,041 - 43,070,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590710   ⟹   XP_017446199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,091,146 (-)NCBI
Rnor_6.0243,002,041 - 43,070,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101935   ⟹   XP_038957863
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,090,596 (-)NCBI
RefSeq Acc Id: XM_039101936   ⟹   XP_038957864
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,023,504 - 43,067,744 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099880   ⟸   NM_001106410
- UniProtKB: H9BFG8 (UniProtKB/TrEMBL),   F1M562 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231983   ⟸   XM_006231921
- Peptide Label: isoform X1
- UniProtKB: H9BFG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231984   ⟸   XM_006231922
- Peptide Label: isoform X2
- UniProtKB: B1WBV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446199   ⟸   XM_017590710
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017446198   ⟸   XM_017590709
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017446197   ⟸   XM_017590708
- Peptide Label: isoform X1
- UniProtKB: H9BFG8 (UniProtKB/TrEMBL),   F1M562 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038526   ⟸   ENSRNOT00000036658
RefSeq Acc Id: ENSRNOP00000073461   ⟸   ENSRNOT00000090616
RefSeq Acc Id: XP_038957863   ⟸   XM_039101935
- Peptide Label: isoform X1
- UniProtKB: F1M562 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957864   ⟸   XM_039101936
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-H9BFG8-F1-model_v2 AlphaFold H9BFG8 1-493 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305492 AgrOrtholog
BioCyc Gene G2FUF-54424 BioCyc
Ensembl Genes ENSRNOG00000013002 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038526 ENTREZGENE
  ENSRNOP00000038526.6 UniProtKB/TrEMBL
  ENSRNOP00000073461 ENTREZGENE
  ENSRNOP00000073461.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036658 ENTREZGENE
  ENSRNOT00000036658.7 UniProtKB/TrEMBL
  ENSRNOT00000090616 ENTREZGENE
  ENSRNOT00000090616.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8367604 IMAGE-MGC_LOAD
InterPro Vasculin_fam UniProtKB/TrEMBL
KEGG Report rno:294734 UniProtKB/TrEMBL
MGC_CLONE MGC:187630 IMAGE-MGC_LOAD
NCBI Gene 294734 ENTREZGENE
PANTHER PTHR14339 UniProtKB/TrEMBL
Pfam Vasculin UniProtKB/TrEMBL
PhenoGen Gpbp1 PhenoGen
UniProt B1WBV9 ENTREZGENE, UniProtKB/TrEMBL
  F1M562 ENTREZGENE
  H9BFG8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1M562 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Gpbp1  GC-rich promoter binding protein 1  RGD1305492_predicted  similar to RIKEN cDNA 1700034P14 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305492_predicted  similar to RIKEN cDNA 1700034P14 (predicted)  LOC294734_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294734_predicted  similar to RIKEN cDNA 1700034P14 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL