Mtmr6 (myotubularin related protein 6) - Rat Genome Database

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Gene: Mtmr6 (myotubularin related protein 6) Rattus norvegicus
Analyze
Symbol: Mtmr6
Name: myotubularin related protein 6
RGD ID: 1305378
Description: Predicted to enable phosphatidylinositol-3,5-bisphosphate phosphatase activity and phosphatidylinositol-3-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in several cellular components, including endoplasmic reticulum-Golgi intermediate compartment; perinuclear region of cytoplasm; and ruffle membrane. Predicted to be active in cytoplasm and nuclear envelope. Orthologous to human MTMR6 (myotubularin related protein 6); PARTICIPATES IN fructose and mannose metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; manganese(II) chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305935; myotubularin-related protein 6; phosphatidylinositol-3,5-bisphosphate 3-phosphatase; phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR6; phosphatidylinositol-3-phosphate phosphatase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,596,091 - 38,634,023 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1538,596,032 - 38,636,672 (+)EnsemblGRCr8
mRatBN7.21534,419,931 - 34,457,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1536,274,857 - 36,312,970 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,425,489 - 37,463,602 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,881,061 - 35,918,993 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,558,917 - 40,597,311 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)Ensemblrn6Rnor6.0
Rnor_5.01544,371,041 - 44,409,234 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41539,362,975 - 39,401,299 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1534,121,583 - 34,159,654 (+)NCBICelera
RGSC_v3.11539,378,721 - 39,415,915 (+)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15831468   PMID:16787938   PMID:22647598  


Genomics

Comparative Map Data
Mtmr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,596,091 - 38,634,023 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1538,596,032 - 38,636,672 (+)EnsemblGRCr8
mRatBN7.21534,419,931 - 34,457,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1536,274,857 - 36,312,970 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,425,489 - 37,463,602 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,881,061 - 35,918,993 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,558,917 - 40,597,311 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)Ensemblrn6Rnor6.0
Rnor_5.01544,371,041 - 44,409,234 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41539,362,975 - 39,401,299 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1534,121,583 - 34,159,654 (+)NCBICelera
RGSC_v3.11539,378,721 - 39,415,915 (+)NCBI
Cytogenetic Map15p12NCBI
MTMR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381325,246,222 - 25,287,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1325,246,222 - 25,287,510 (-)Ensemblhg38GRCh38
GRCh371325,820,360 - 25,861,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,718,339 - 24,759,704 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341324,719,371 - 24,759,704NCBI
Celera136,884,597 - 6,925,963 (-)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef136,634,667 - 6,676,112 (-)NCBIHuRef
CHM1_11325,788,581 - 25,829,935 (-)NCBICHM1_1
T2T-CHM13v2.01324,455,889 - 24,497,172 (-)NCBIT2T-CHM13v2.0
Mtmr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,488,941 - 60,539,820 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,502,677 - 60,539,819 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381460,265,180 - 60,302,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,265,228 - 60,302,370 (+)Ensemblmm10GRCm38
MGSCv371460,884,065 - 60,921,207 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361459,219,338 - 59,256,480 (+)NCBIMGSCv36mm8
Celera1458,054,681 - 58,091,815 (+)NCBICelera
Cytogenetic Map14D1NCBI
Mtmr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)Ensembl
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBIChiLan1.0ChiLan1.0
MTMR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,843,620 - 24,884,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,953,196 - 15,994,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,539,151 - 6,579,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,889,577 - 24,931,192 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,889,582 - 24,930,980 (-)EnsemblpanPan2panpan1.1
MTMR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,182,931 - 14,221,690 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,182,702 - 14,219,613 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2514,262,817 - 14,301,555 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02514,314,112 - 14,352,875 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,314,141 - 14,409,529 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,196,063 - 14,234,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,198,000 - 14,236,750 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,246,944 - 14,285,712 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mtmr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,420,880 - 116,455,391 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366881,033,099 - 1,067,802 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366881,033,153 - 1,067,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,188,563 - 3,217,412 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1113,188,560 - 3,217,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,485,812 - 2,491,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,638,980 - 4,681,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,638,780 - 4,681,839 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605739,759,917 - 39,804,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477613,237,075 - 13,282,214 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477613,237,244 - 13,281,597 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Mtmr6
37 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:211
Interacting mature miRNAs:273
Transcripts:ENSRNOT00000065328
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
RH129548  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21534,457,553 - 34,457,735 (+)MAPPERmRatBN7.2
Rnor_6.01540,597,002 - 40,597,183NCBIRnor6.0
Rnor_5.01544,408,925 - 44,409,106UniSTSRnor5.0
RGSC_v3.41539,400,992 - 39,401,173UniSTSRGSC3.4
Celera1534,159,347 - 34,159,528UniSTS
RH 3.4 Map15229.2UniSTS
Cytogenetic Map15p12UniSTS
BE108524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21534,456,613 - 34,456,770 (+)MAPPERmRatBN7.2
Rnor_6.01540,596,062 - 40,596,218NCBIRnor6.0
Rnor_5.01544,407,985 - 44,408,141UniSTSRnor5.0
RGSC_v3.41539,400,052 - 39,400,208UniSTSRGSC3.4
Celera1534,158,407 - 34,158,563UniSTS
RH 3.4 Map15229.1UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065328   ⟹   ENSRNOP00000062812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,596,032 - 38,636,672 (+)Ensembl
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)Ensembl
Rnor_6.0 Ensembl1540,558,963 - 40,597,309 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082665   ⟹   ENSRNOP00000070397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,596,034 - 38,634,025 (+)Ensembl
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)Ensembl
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111768   ⟹   ENSRNOP00000091311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1538,608,883 - 38,634,025 (+)Ensembl
mRatBN7.2 Ensembl1534,432,723 - 34,457,861 (+)Ensembl
RefSeq Acc Id: NM_001394711   ⟹   NP_001381640
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,596,091 - 38,634,023 (+)NCBI
mRatBN7.21534,419,931 - 34,457,863 (+)NCBI
RefSeq Acc Id: NM_001394712   ⟹   NP_001381641
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,596,091 - 38,634,023 (+)NCBI
mRatBN7.21534,419,931 - 34,457,863 (+)NCBI
RefSeq Acc Id: NR_172203
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81538,596,091 - 38,634,023 (+)NCBI
mRatBN7.21534,419,931 - 34,457,863 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001381640 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381641 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0A0G2JXT6 (Get FASTA)   NCBI Sequence Viewer  
  EDL85259 (Get FASTA)   NCBI Sequence Viewer  
  EDL85260 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000062812
  ENSRNOP00000070397
  ENSRNOP00000070397.1
Ensembl Acc Id: ENSRNOP00000070397   ⟸   ENSRNOT00000082665
Ensembl Acc Id: ENSRNOP00000062812   ⟸   ENSRNOT00000065328
Ensembl Acc Id: ENSRNOP00000091311   ⟸   ENSRNOT00000111768
RefSeq Acc Id: NP_001381640   ⟸   NM_001394711
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JXT6 (UniProtKB/Swiss-Prot),   A0A8I6AFC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381641   ⟸   NM_001394712
- Peptide Label: isoform 2
- UniProtKB: D3ZC22 (UniProtKB/TrEMBL),   A6K699 (UniProtKB/TrEMBL),   A0A8I6AFC4 (UniProtKB/TrEMBL)
Protein Domains
GRAM   Myotubularin phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXT6-F1-model_v2 AlphaFold A0A0G2JXT6 1-655 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699735
Promoter ID:EPDNEW_R10258
Type:initiation region
Name:Mtmr6_1
Description:myotubularin related protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01540,559,021 - 40,559,081EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305378 AgrOrtholog
BioCyc Gene G2FUF-13534 BioCyc
Ensembl Genes ENSRNOG00000012918 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000065328 ENTREZGENE
  ENSRNOT00000082665 ENTREZGENE
  ENSRNOT00000082665.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
InterPro MTMR6_PH-GRAM UniProtKB/Swiss-Prot
  Myotubularin-like_Pase_dom UniProtKB/Swiss-Prot
  Myotubularin_fam UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot
  Tyr_Pase_AS UniProtKB/Swiss-Prot
  Tyr_Pase_cat UniProtKB/Swiss-Prot
NCBI Gene 305935 ENTREZGENE
PANTHER PTHR10807 UniProtKB/Swiss-Prot
  PTHR10807:SF34 UniProtKB/Swiss-Prot
Pfam Myotub-related UniProtKB/Swiss-Prot
  PH-GRAM_MTMR6-like UniProtKB/Swiss-Prot
PhenoGen Mtmr6 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012918 RatGTEx
SMART PTPc_motif UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF52799 UniProtKB/Swiss-Prot
UniProt A0A0G2JXT6 ENTREZGENE
  A0A8I6AFC4 ENTREZGENE, UniProtKB/TrEMBL
  A6K699 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC22 ENTREZGENE, UniProtKB/TrEMBL
  MTMR6_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mtmr6  myotubularin related protein 6   Mtmr6_predicted  myotubularin related protein 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mtmr6_predicted  myotubularin related protein 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED