Gtpbp3 (GTP binding protein 3) - Rat Genome Database

Name: Gtpbp3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gtpbp3 (GTP binding protein 3) Rattus norvegicus

Analyze

Symbol:

Gtpbp3

Name:

GTP binding protein 3

RGD ID:

1305367

Description:

Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in tRNA methylation and tRNA wobble uridine modification. Predicted to be located in nucleus. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GTP binding protein 3 (mitochondrial); GTP-binding protein 3; LOC290633; tRNA modification GTPase GTPBP3, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GTPBP3 (GTP binding protein 3, mitochondrial)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gtpbp3 (GTP binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gtpbp3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GTPBP3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GTPBP3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gtpbp3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GTPBP3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GTPBP3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gtpbp3 (GTP binding protein 3, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GTPBP3 (GTP binding protein 3, mitochondrial)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gtpbp3 (GTP binding protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gtpbp3 (GTP binding protein 3, mitochondrial)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG18528	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MSS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mtcu-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gtpbp3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	18,175,766 - 18,180,857 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,175,766 - 18,180,857 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,226,809 - 18,231,900 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,359,482 - 19,364,473 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,279,747 - 18,284,838 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,897,135 - 19,902,226 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,896,986 - 19,902,245 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,758,699 - 19,763,790 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,659,339 - 18,664,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,659,336 - 18,664,439 (+)	NCBI
Celera	16	18,380,702 - 18,385,801 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

combined oxidative phosphorylation deficiency 23 (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

intellectual disability (ISO)

Mental Retardation, Autosomal Recessive 53 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

folic acid (ISO)

L-methionine (ISO)

lead(0) (ISO)

menadione (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

potassium dichromate (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

tRNA methylation (IBA)

tRNA wobble uridine modification (IBA)

Cellular Component

cytoplasm (IBA)

mitochondrion (IBA,ISO)

nucleus (ISO)

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:18614015

Genomics

Comparative Map Data

Gtpbp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	18,175,766 - 18,180,857 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,175,766 - 18,180,857 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,226,809 - 18,231,900 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,359,482 - 19,364,473 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,279,747 - 18,284,838 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,897,135 - 19,902,226 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,896,986 - 19,902,245 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,758,699 - 19,763,790 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,659,339 - 18,664,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,659,336 - 18,664,439 (+)	NCBI
Celera	16	18,380,702 - 18,385,801 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

GTPBP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,334,982 - 17,342,731 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,334,920 - 17,342,731 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,445,791 - 17,453,540 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,309,364 - 17,314,530 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	17,350,088 - 17,355,271 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,012,217 - 17,019,987 (+)	NCBI		HuRef
CHM1_1	19	17,445,227 - 17,452,976 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,469,817 - 17,477,573 (+)	NCBI		T2T-CHM13v2.0

Gtpbp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,938,788 - 71,952,268 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	71,940,747 - 71,952,227 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,486,144 - 71,499,624 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,488,103 - 71,499,583 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,012,002 - 74,017,299 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,417,092 - 74,422,389 (+)	NCBI		MGSCv36	mm8
MGSCv36	8	70,872,407 - 70,877,705 (+)	NCBI		MGSCv36	mm8
Celera	8	73,999,199 - 74,003,692 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

Gtpbp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955524	899,475 - 903,168 (-)	NCBI	ChiLan1.0	ChiLan1.0

GTPBP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	19	21,212,688 - 21,220,490 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,822,786 - 16,830,787 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,797,130 - 17,804,481 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,797,131 - 17,804,481 (+)	Ensembl	panpan1.1		panPan2

GTPBP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,422,653 - 45,427,434 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,423,089 - 45,426,574 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,335,604 - 45,340,476 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,908,930 - 45,913,798 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,908,930 - 45,913,676 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	45,145,446 - 45,150,316 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,555,343 - 45,560,214 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,831,437 - 45,836,311 (-)	NCBI		UU_Cfam_GSD_1.0

Gtpbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	203,978,805 - 203,982,556 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,527,670 - 3,531,494 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936596	3,527,903 - 3,532,931 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GTPBP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,352,026 - 60,357,176 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,352,012 - 60,355,403 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GTPBP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,844,678 - 15,847,517 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666074	3,593,124 - 3,598,856 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gtpbp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	615,181 - 619,914 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	616,831 - 619,953 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gtpbp3
19 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	392
Count of miRNA genes:	189
Interacting mature miRNAs:	213
Transcripts:	ENSRNOT00000060355
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15726433	21034895	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat

Markers in Region

RH131780

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	18,180,387 - 18,180,745 (+)	MAPPER	mRatBN7.2
mRatBN7.2	16	18,180,441 - 18,180,745 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	19,901,811 - 19,902,114	NCBI	Rnor6.0
Rnor_6.0	16	19,901,757 - 19,902,114	NCBI	Rnor6.0
Rnor_5.0	16	19,763,375 - 19,763,678	UniSTS	Rnor5.0
Rnor_5.0	16	19,763,321 - 19,763,678	UniSTS	Rnor5.0
RGSC_v3.4	16	18,663,972 - 18,664,329	UniSTS	RGSC3.4
RGSC_v3.4	16	18,664,026 - 18,664,329	UniSTS	RGSC3.4
Celera	16	18,385,386 - 18,385,689	UniSTS
Celera	16	18,385,332 - 18,385,689	UniSTS
RH 3.4 Map	16	181.1	UniSTS
Cytogenetic Map	16	p14	UniSTS

UniSTS:235923

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	18,179,484 - 18,179,855 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	19,900,854 - 19,901,224	NCBI	Rnor6.0
Rnor_5.0	16	19,762,418 - 19,762,788	UniSTS	Rnor5.0
RGSC_v3.4	16	18,663,068 - 18,663,438	UniSTS	RGSC3.4
Celera	16	18,384,429 - 18,384,799	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		12	2	2	1	2			43	18	25
Low	3	31	55	39	18	39	8	11	31	17	16	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000060355 ⟹ ENSRNOP00000057102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,175,766 - 18,180,857 (+)	Ensembl
Rnor_6.0 Ensembl	16	19,896,986 - 19,902,245 (+)	Ensembl

RefSeq Acc Id:

NM_001011919 ⟹ NP_001011919

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	18,175,766 - 18,180,857 (+)	NCBI
Rnor_6.0	16	19,897,135 - 19,902,226 (+)	NCBI
Rnor_5.0	16	19,758,699 - 19,763,790 (+)	NCBI
RGSC_v3.4	16	18,659,339 - 18,664,441 (+)	RGD
Celera	16	18,380,702 - 18,385,801 (+)	RGD

Sequence:

show sequence

CTTGAAACCGTGCAGAAGTGTCGACCTAGGTGCTTGCAAATTTGAAATCCATGTGGCGTGGGCT
AAGCGCCCTGGTGACCCGGCCGGCAAGTGCGCCCCTCAGGCTGTGCGCACGCTGCAGCACCGGT
GCAGAGTCCTTGGTCCCCGGGAGCACCATCTTTGCGCTCAGCTCCGGCCAGGGACGCTGCGCCA
TCGCAGTGATCCGCACCAGCGGCCCAGCCAGTGGGCTCGCGCTCCGCAGCCTCACGGCTCTCCG
GGAGCCGCCTCCGGCCCGCAGCGCCTGCTTGCGCCTTCTCCGCCACCCTTGCTCCGGGGAGCCA
CTGGACCGCTCACTCGTCCTCTGGTTTCCAGGCCCCCAGAGTTTCACGGGTGAGGATTGCATGG
AGTTGCACGTACACGGAGGTCCTGCGGTGGTCAGCGGTGTCCTGCAGGCATTGGGTAGTGTGCC
AGGACTTCGCCCAGCCAAGGCCGGGGAGTTCACCAGGAGGGCCTTTGCCCATGGCAAACTGAGC
CTGACTGAAGTGGAGGGACTTGCGGATCTGATCCATGCAGAAACAGAGGCCCAGCGTCGACAGG
CCTTGAGGCAGCTGGATGGGGAACTGAGCCAGCTGTGCCAGGGCTGGGCGAAGACCCTCACCAA
GGCTCTGGCCCATGTGGAGGCCTACATTGACTTCGGAGAGGATGATAATTTGGAAGAGGGTGTG
TTGGAGCAGGTGGACAGAGATGTGCGGGCCCTGGAGGTGGCACTGAGTTCCCACCTGCGAGATG
CCAGACGTGGACAGAGGCTCCGCTCAGGGGCAAACGTTGTGGTCGCCGGACCGCCCAATGCGGG
CAAGAGCAGTCTAGTGAATCTGCTCAGCCAGAAGCCAGTGTCCATTGTGTCCCCAGAGCCCGGG
ACCACCCGTGACATCTTGGAGACTCCTGTGGACCTGGCTGGGTTTCCTGTCTTGTTGAGCGACA
CCGCGGGGCTTCGGGAAGGTGCAGGTGCTGTTGAGCAGGAGGGAGTGCGCAGGGCCCGCCAGAG
GCTGGAGCAAGCTGACATCATCCTGGGGATGCTGGATGCCTCCGACCTGGCTTCCTCCTCTAGC
TGCAGCTTCCTGGACACTGTGGTGGCCCCACTGGTAGCACAAAGCCATGACAGTGGCAGGCAGC
GCCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCAGCAGCACAGC
CCTGCCTCCTCACCTGCTTCTGTCCTGCCACACTGGAGCTGGGATGGACGCCCTCCTGCAGGCC
CTGAAGACTGAACTGGCTGCAGTGTGTGGGGACCCATCCACAGGACCGCCGCTCTTGACCCGAG
CTAGGCACCAGTACCACCTCCAGGGCTGCCTGGATGCCCTGGGCCGCTTCCAGCTGACCACAGA
TCTGGCTCTGGCCGCCGAGGCCCTGCGCCAGGCTCGGAGACAGCTAAGCCACCTCACAGGTGGA
GGGGGAACCGAGGAGATCCTGGACCTCATCTTCCAGGACTTCTGTGTGGGCAAGTGAGGTCAGA
GTTCCCACAAGCTCATGATCCAAGATGGCAGACCCCCCGACAGAGAGCAGGAGAGCACTGGAGG
TCTGCAGCCCTCCGCAGTGAGGAGAAAGACGGGTCAGGGATCTGAGGACGGATAATTCCTCACC
CCGGATGGTGGGATTAAGGTCCACATCATGTCGCCAAGTGTCTCAAGTGTCTCCATGATATAGT
GGTAGAGGTGAAACCCATGAGTGTTAGGTGCTGAGCCACACCCTCTGTACGACACTGGGAGATT
CTGGGCAGAGGCTCCACCCCTGAGCCACACCCTCTGCCCATCACTGGGAGATTCTGGGCAGAGG
CTCCAACCCCTGAGCCACACCCTCTGCCCATCACTGGGAGAGTCTAGGCAGAGGCTCCACACCC
TGAGCCACACCCTCTGCCCATCACTGGGAGAGTCTAGGCAGAGGCTCCACACCCTGAGTCACAC
CCTCTGCCCATCACTGGGAGATTCTGGGCAGAGGCTCCAACCCCTGAGCCACACCCTCTGCCCA
TCACTGGGAGATTCTGGGCAAAGGCTCCACCCCTGAGTCACACCCTCTGCCCATCACTGGGAGA
TTCTGGGCAAAGGCTCCACCCCTGAGTTGCACCCTCTGCCCATCACTGGGAGATTCTGGGCAGA
GGCTCCACCCCTGAGCCACACCCCGTAGCTTCGTTGTTTTTTTTGTTTTAATTACCAAAGGAGA
ACGAAGAGTTCTGGTAATCCAGAAACATATGTTCACAAGGATCAGTCAGCCTTACCTTCCATAA
CTTTGCCGACGTATTTCTATTTATGGCATCGTTTGCTGATTAAATACATTTATTTTTCCTTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001011919	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87083	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057102
GenBank Protein	Q5PQQ1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001011919 ⟸ NM_001011919
- Peptide Label:	precursor
- UniProtKB:	Q5PQQ1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MWRGLSALVTRPASAPLRLCARCSTGAESLVPGSTIFALSSGQGRCAIAVIRTSGPASGLALRS LTALREPPPARSACLRLLRHPCSGEPLDRSLVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQA LGSVPGLRPAKAGEFTRRAFAHGKLSLTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWA KTLTKALAHVEAYIDFGEDDNLEEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAG PPNAGKSSLVNLLSQKPVSIVSPEPGTTRDILETPVDLAGFPVLLSDTAGLREGAGAVEQEGVR RARQRLEQADIILGMLDASDLASSSSCSFLDTVVAPLVAQSHDSGRQRLLLLLNKSDLLSANAP ASSTALPPHLLLSCHTGAGMDALLQALKTELAAVCGDPSTGPPLLTRARHQYHLQGCLDALGRF QLTTDLALAAEALRQARRQLSHLTGGGGTEEILDLIFQDFCVGK hide sequence

RefSeq Acc Id:

ENSRNOP00000057102 ⟸ ENSRNOT00000060355

Protein Domains

TrmE-type G

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQQ1-F1-model_v2	AlphaFold	Q5PQQ1	1-492	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305367	AgrOrtholog
BioCyc Gene	G2FUF-11847	BioCyc
BioCyc Pathway	PWY-7889 [tRNA-uridine 2-thiolation (mammalian mitochondria)]	BioCyc
Ensembl Genes	ENSRNOG00000023403	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000060355	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.120.430	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7189218	IMAGE-MGC_LOAD
InterPro	G_TrmE	UniProtKB/Swiss-Prot
	GTP-bd_TrmE_N	UniProtKB/Swiss-Prot
	GTP_binding_domain	UniProtKB/Swiss-Prot
	GTPase_MnmE	UniProtKB/Swiss-Prot
	MnmE_dom2	UniProtKB/Swiss-Prot
	MnmE_helical	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot
	TrmE/GcvT_dom1	UniProtKB/Swiss-Prot
KEGG Report	rno:290633	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94548	IMAGE-MGC_LOAD
NCBI Gene	290633	ENTREZGENE
PANTHER	TRNA MODIFICATION GTPASE GTPBP3	UniProtKB/Swiss-Prot
	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	UniProtKB/Swiss-Prot
Pfam	MMR_HSR1	UniProtKB/Swiss-Prot
	MnmE_helical	UniProtKB/Swiss-Prot
	TrmE_N	UniProtKB/Swiss-Prot
PhenoGen	Gtpbp3	PhenoGen
PROSITE	G_TRME	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000023403	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
	TrmE connector domain	UniProtKB/Swiss-Prot
UniProt	GTPB3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-11-06	Gtpbp3	GTP binding protein 3	Gtpbp3	GTP binding protein 3 (mitochondrial)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Gtpbp3	GTP binding protein 3 (mitochondrial)	Gtpbp3	GTP binding protein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Gtpbp3	GTP binding protein 3	Gtpbp3_predicted	GTP binding protein 3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Gtpbp3_predicted	GTP binding protein 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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