Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Gtpbp3 | Rat | combined oxidative phosphorylation deficiency 23 | | ISO | GTPBP3 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Gtpbp3 | Rat | combined oxidative phosphorylation deficiency 23 | | ISO | GTPBP3 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Gtpbp3 (Rattus norvegicus - Norway rat) |
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GTPBP3 (Homo sapiens - human) |
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Gtpbp3 (Mus musculus - house mouse) |
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Gtpbp3 (Chinchilla lanigera - long-tailed chinchilla) |
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GTPBP3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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GTPBP3 (Canis lupus familiaris - dog) |
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Gtpbp3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GTPBP3 (Sus scrofa - pig) |
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GTPBP3 (Chlorocebus sabaeus - green monkey) |
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Gtpbp3 (Heterocephalus glaber - naked mole-rat) |
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Variants in Gtpbp3
25 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH131780 |
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UniSTS:235923 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001011919 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AC130741 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC087083 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000060355 ⟹ ENSRNOP00000057102 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001011919 ⟹ NP_001011919 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001011919 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH87083 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000057102.2 | ||
ENSRNOP00055014475 | |||
ENSRNOP00060015000 | |||
ENSRNOP00065027949 | |||
GenBank Protein | Q5PQQ1 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001011919 ⟸ NM_001011919 |
- Peptide Label: | precursor |
- UniProtKB: | Q5PQQ1 (UniProtKB/Swiss-Prot) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000057102 ⟸ ENSRNOT00000060355 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5PQQ1-F1-model_v2 | AlphaFold | Q5PQQ1 | 1-492 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1305367 | AgrOrtholog |
BioCyc Gene | G2FUF-11847 | BioCyc |
BioCyc Pathway | PWY-7889 [tRNA-uridine 2-thiolation (mammalian mitochondria)] | BioCyc |
BioCyc Pathway Image | PWY-7889 | BioCyc |
Ensembl Genes | ENSRNOG00000023403 | Ensembl, UniProtKB/Swiss-Prot |
ENSRNOG00055010622 | UniProtKB/Swiss-Prot | |
ENSRNOG00060011340 | UniProtKB/Swiss-Prot | |
ENSRNOG00065020561 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000060355.5 | UniProtKB/Swiss-Prot |
ENSRNOT00055017988 | UniProtKB/Swiss-Prot | |
ENSRNOT00060019180 | UniProtKB/Swiss-Prot | |
ENSRNOT00065034807 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 1.20.120.430 | UniProtKB/Swiss-Prot |
3.40.50.300 | UniProtKB/Swiss-Prot | |
IMAGE_CLONE | IMAGE:7189218 | IMAGE-MGC_LOAD |
InterPro | G_TrmE | UniProtKB/Swiss-Prot |
GTP-bd_TrmE_N | UniProtKB/Swiss-Prot | |
GTP_binding_domain | UniProtKB/Swiss-Prot | |
GTPase_MnmE | UniProtKB/Swiss-Prot | |
MnmE_dom2 | UniProtKB/Swiss-Prot | |
MnmE_helical | UniProtKB/Swiss-Prot | |
P-loop_NTPase | UniProtKB/Swiss-Prot | |
Small_GTP-bd_dom | UniProtKB/Swiss-Prot | |
TrmE/GcvT_dom1 | UniProtKB/Swiss-Prot | |
KEGG Report | rno:290633 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:94548 | IMAGE-MGC_LOAD |
NCBI Gene | 290633 | ENTREZGENE |
PANTHER | TRNA MODIFICATION GTPASE GTPBP3 | UniProtKB/Swiss-Prot |
TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL | UniProtKB/Swiss-Prot | |
Pfam | MMR_HSR1 | UniProtKB/Swiss-Prot |
MnmE_helical | UniProtKB/Swiss-Prot | |
TrmE_N | UniProtKB/Swiss-Prot | |
PhenoGen | Gtpbp3 | PhenoGen |
PROSITE | G_TRME | UniProtKB/Swiss-Prot |
RatGTEx | ENSRNOG00000023403 | RatGTEx |
ENSRNOG00055010622 | RatGTEx | |
ENSRNOG00060011340 | RatGTEx | |
ENSRNOG00065020561 | RatGTEx | |
Superfamily-SCOP | SSF52540 | UniProtKB/Swiss-Prot |
TrmE connector domain | UniProtKB/Swiss-Prot | |
UniProt | GTPB3_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2009-11-06 | Gtpbp3 | GTP binding protein 3 | Gtpbp3 | GTP binding protein 3 (mitochondrial) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-04 | Gtpbp3 | GTP binding protein 3 (mitochondrial) | Gtpbp3 | GTP binding protein 3 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Gtpbp3 | GTP binding protein 3 | Gtpbp3_predicted | GTP binding protein 3 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Gtpbp3_predicted | GTP binding protein 3 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |