Crocc (ciliary rootlet coiled-coil, rootletin) - Rat Genome Database

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Gene: Crocc (ciliary rootlet coiled-coil, rootletin) Rattus norvegicus
Analyze
Symbol: Crocc
Name: ciliary rootlet coiled-coil, rootletin
RGD ID: 1305364
Description: Predicted to enable actin binding activity; kinesin binding activity; and structural molecule activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in several processes, including centriole-centriole cohesion; positive regulation of cilium assembly; and positive regulation of protein localization to cilium. Predicted to act upstream of or within several processes, including ciliary basal body organization; epithelial structure maintenance; and photoreceptor cell maintenance. Predicted to be located in several cellular components, including cytoskeleton; photoreceptor inner segment; and subapical part of cell. Predicted to be active in centriole and centrosome. Orthologous to human CROCC (ciliary rootlet coiled-coil, rootletin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ciliary rootlet coiled-coil; LOC313663; rootletin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,603,979 - 158,646,728 (-)NCBIGRCr8
mRatBN7.25153,320,962 - 153,363,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,320,962 - 153,363,578 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,009,395 - 156,052,063 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,782,666 - 157,825,334 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,771,850 - 157,814,519 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,540,453 - 159,583,194 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,540,421 - 159,583,049 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,252,706 - 163,295,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45159,875,186 - 159,896,308 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15159,885,823 - 159,928,439 (-)NCBI
Celera5151,685,993 - 151,728,367 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12427867   PMID:15870283   PMID:16018997   PMID:16203858   PMID:16339073   PMID:18086858   PMID:19056867   PMID:21212183   PMID:21399614   PMID:23178122   PMID:23376485   PMID:24421332  
PMID:24554434   PMID:27623382   PMID:29891944  


Genomics

Comparative Map Data
Crocc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,603,979 - 158,646,728 (-)NCBIGRCr8
mRatBN7.25153,320,962 - 153,363,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,320,962 - 153,363,578 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,009,395 - 156,052,063 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,782,666 - 157,825,334 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,771,850 - 157,814,519 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,540,453 - 159,583,194 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,540,421 - 159,583,049 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,252,706 - 163,295,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45159,875,186 - 159,896,308 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15159,885,823 - 159,928,439 (-)NCBI
Celera5151,685,993 - 151,728,367 (-)NCBICelera
Cytogenetic Map5q36NCBI
CROCC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,914,085 - 16,972,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,740,273 - 16,972,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37117,248,426 - 17,299,459 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,121,032 - 17,172,061 (+)NCBINCBI36Build 36hg18NCBI36
Build 34116,993,750 - 17,044,766NCBI
Celera115,570,790 - 15,621,812 (+)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,492,380 - 15,543,555 (+)NCBIHuRef
CHM1_1117,356,762 - 17,407,788 (+)NCBICHM1_1
T2T-CHM13v2.0116,724,512 - 16,783,795 (+)NCBIT2T-CHM13v2.0
Crocc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,743,948 - 140,787,927 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,743,948 - 140,787,861 (-)EnsemblGRCm39 Ensembl
GRCm384141,016,637 - 141,060,615 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,016,637 - 141,060,550 (-)EnsemblGRCm38mm10GRCm38
MGSCv374140,572,552 - 140,616,460 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,288,713 - 140,325,737 (-)NCBIMGSCv36mm8
Celera4142,816,632 - 142,864,572 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.31NCBI
Crocc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,833,665 - 1,874,116 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555271,833,348 - 1,874,211 (-)NCBIChiLan1.0ChiLan1.0
CROCC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,157,457 - 210,216,934 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,276,263 - 209,335,646 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,857,442 - 15,916,674 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,923,682 - 16,973,999 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,923,823 - 16,973,479 (+)Ensemblpanpan1.1panPan2
CROCC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,224,063 - 81,263,718 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,224,352 - 81,263,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,760,717 - 77,802,221 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,870,105 - 81,912,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,870,394 - 81,909,564 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,623,112 - 78,665,037 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,639,971 - 79,679,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,708,117 - 80,750,042 (-)NCBIUU_Cfam_GSD_1.0
Crocc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505838,091,115 - 38,135,143 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,918,919 - 3,958,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,918,237 - 3,958,635 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CROCC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,559,105 - 75,606,299 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,558,558 - 75,606,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,865,321 - 69,919,615 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CROCC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,618,768 - 115,676,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,619,307 - 115,668,112 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666033414,824 - 501,772 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crocc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,567,316 - 2,604,992 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,562,321 - 2,605,527 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Crocc
262 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:208
Count of miRNA genes:123
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000011114, ENSRNOT00000055839
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat

Markers in Region
RH140813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25153,321,097 - 153,321,243 (+)MAPPERmRatBN7.2
Rnor_6.05159,540,589 - 159,540,734NCBIRnor6.0
Rnor_5.05163,252,842 - 163,252,987UniSTSRnor5.0
RGSC_v3.45159,875,320 - 159,875,465UniSTSRGSC3.4
Celera5151,686,129 - 151,686,274UniSTS
RH 3.4 Map51051.4UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001415935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC141489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011114   ⟹   ENSRNOP00000011115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5153,320,962 - 153,357,426 (-)Ensembl
Rnor_6.0 Ensembl5159,540,421 - 159,577,134 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000055839   ⟹   ENSRNOP00000052694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5153,320,962 - 153,363,530 (-)Ensembl
Rnor_6.0 Ensembl5159,540,453 - 159,583,049 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106944   ⟹   ENSRNOP00000079248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5153,320,962 - 153,363,507 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107095   ⟹   ENSRNOP00000079103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5153,320,962 - 153,363,578 (-)Ensembl
RefSeq Acc Id: NM_001415935   ⟹   NP_001402864
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,603,979 - 158,640,238 (-)NCBI
mRatBN7.25153,320,962 - 153,357,227 (-)NCBI
RefSeq Acc Id: XM_017593415   ⟹   XP_017448904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,604,375 - 158,646,476 (-)NCBI
mRatBN7.25153,320,962 - 153,363,486 (-)NCBI
Rnor_6.05159,540,453 - 159,578,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110073   ⟹   XP_038966001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,604,375 - 158,646,725 (-)NCBI
mRatBN7.25153,320,962 - 153,363,734 (-)NCBI
RefSeq Acc Id: XM_063287805   ⟹   XP_063143875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,604,375 - 158,646,727 (-)NCBI
RefSeq Acc Id: XM_063287806   ⟹   XP_063143876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,603,979 - 158,646,725 (-)NCBI
RefSeq Acc Id: XM_063287807   ⟹   XP_063143877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,603,979 - 158,646,726 (-)NCBI
RefSeq Acc Id: XM_063287809   ⟹   XP_063143879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,603,979 - 158,646,725 (-)NCBI
RefSeq Acc Id: XM_063287810   ⟹   XP_063143880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,603,979 - 158,646,726 (-)NCBI
RefSeq Acc Id: XM_063287811   ⟹   XP_063143881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,604,375 - 158,646,725 (-)NCBI
RefSeq Acc Id: XM_063287812   ⟹   XP_063143882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,604,375 - 158,646,724 (-)NCBI
RefSeq Acc Id: XM_063287813   ⟹   XP_063143883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85158,607,549 - 158,646,728 (-)NCBI
RefSeq Acc Id: XP_017448904   ⟸   XM_017593415
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZM97 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052694   ⟸   ENSRNOT00000055839
Ensembl Acc Id: ENSRNOP00000011115   ⟸   ENSRNOT00000011114
RefSeq Acc Id: XP_038966001   ⟸   XM_039110073
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZM97 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079248   ⟸   ENSRNOT00000106944
Ensembl Acc Id: ENSRNOP00000079103   ⟸   ENSRNOT00000107095
RefSeq Acc Id: NP_001402864   ⟸   NM_001415935
- UniProtKB: F1M6Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143880   ⟸   XM_063287810
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063143877   ⟸   XM_063287807
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063143879   ⟸   XM_063287809
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143876   ⟸   XM_063287806
- Peptide Label: isoform X3
- UniProtKB: F1M6Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143875   ⟸   XM_063287805
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063143881   ⟸   XM_063287811
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063143882   ⟸   XM_063287812
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063143883   ⟸   XM_063287813
- Peptide Label: isoform X9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6Q2-F1-model_v2 AlphaFold F1M6Q2 1-1986 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305364 AgrOrtholog
BioCyc Gene G2FUF-39372 BioCyc
Ensembl Genes ENSRNOG00000008334 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011114.9 UniProtKB/TrEMBL
  ENSRNOT00000055839.5 UniProtKB/TrEMBL
  ENSRNOT00000106944.1 UniProtKB/TrEMBL
  ENSRNOT00000107095.1 UniProtKB/TrEMBL
InterPro Rootletin-like_CC UniProtKB/TrEMBL
NCBI Gene 313663 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN 2 UniProtKB/TrEMBL
  PTHR23159:SF17 UniProtKB/TrEMBL
Pfam Rootletin UniProtKB/TrEMBL
PhenoGen Crocc PhenoGen
RatGTEx ENSRNOG00000008334 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt A0A8I5ZM97 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZN13_RAT UniProtKB/TrEMBL
  D4AD05_RAT UniProtKB/TrEMBL
  F1M6Q2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Crocc  ciliary rootlet coiled-coil, rootletin   Crocc_predicted  ciliary rootlet coiled-coil, rootletin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Crocc_predicted  ciliary rootlet coiled-coil, rootletin (predicted)      Symbol and Name status set to approved 70820 APPROVED