Cntrl (centriolin) - Rat Genome Database

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Gene: Cntrl (centriolin) Rattus norvegicus
Analyze
Symbol: Cntrl
Name: centriolin
RGD ID: 1305317
Description: Predicted to act upstream of or within circulatory system development and kidney development. Predicted to be located in several cellular components, including Golgi apparatus; microtubule cytoskeleton; and perinuclear region of cytoplasm. Predicted to be part of centriolar subdistal appendage. Orthologous to human CNTRL (centriolin); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 1; centrosomal protein 110; centrosomal protein 110kDa; Cep1; Cep110; LOC311886
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,825,575 - 38,897,835 (+)NCBIGRCr8
mRatBN7.2318,428,147 - 18,500,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,428,103 - 18,500,380 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0314,299,441 - 14,371,681 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,299,479 - 14,371,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,617,985 - 19,690,198 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,168,983 - 14,242,139 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1314,070,468 - 14,136,042 (+)NCBI
Celera313,147,340 - 13,219,717 (+)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
atrazine  (EXP)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (ISO)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
lead(0)  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8982254   PMID:15337773   PMID:19946888   PMID:21399614   PMID:23213374   PMID:25220058   PMID:25807483  


Genomics

Comparative Map Data
Cntrl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,825,575 - 38,897,835 (+)NCBIGRCr8
mRatBN7.2318,428,147 - 18,500,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,428,103 - 18,500,380 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0314,299,441 - 14,371,681 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,299,479 - 14,371,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,617,985 - 19,690,198 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,168,983 - 14,242,139 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1314,070,468 - 14,136,042 (+)NCBI
Celera313,147,340 - 13,219,717 (+)NCBICelera
Cytogenetic Map3p11NCBI
CNTRL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389121,074,955 - 121,177,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9121,074,660 - 121,177,729 (+)EnsemblGRCh38hg38GRCh38
GRCh379123,837,233 - 123,939,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369122,890,395 - 122,979,707 (+)NCBINCBI36Build 36hg18NCBI36
Build 349120,930,127 - 121,019,442NCBI
Celera994,499,026 - 94,588,358 (+)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef993,468,455 - 93,557,631 (+)NCBIHuRef
CHM1_19123,997,581 - 124,086,778 (+)NCBICHM1_1
T2T-CHM13v2.09133,271,062 - 133,373,637 (+)NCBIT2T-CHM13v2.0
Cntrl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,999,504 - 35,068,834 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,999,504 - 35,068,834 (+)EnsemblGRCm39 Ensembl
GRCm38235,109,476 - 35,178,822 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl235,109,492 - 35,178,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv37234,965,012 - 35,034,342 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera234,804,009 - 34,873,318 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.36NCBI
Cntrl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554196,815,255 - 6,892,466 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554196,814,525 - 6,892,466 (-)NCBIChiLan1.0ChiLan1.0
CNTRL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,167,284 - 18,271,021 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1918,167,694 - 18,273,428 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0992,202,477 - 92,306,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19120,548,170 - 120,650,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,548,055 - 120,650,375 (+)Ensemblpanpan1.1panPan2
CNTRL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11174,086,408 - 74,156,482 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1174,086,422 - 74,156,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,496,305 - 72,567,665 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01175,215,409 - 75,293,801 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1175,215,417 - 75,296,748 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11173,723,191 - 73,801,532 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,753,488 - 73,831,910 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,493,205 - 74,571,714 (+)NCBIUU_Cfam_GSD_1.0
Cntrl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947189,817,011 - 189,905,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364879,595,516 - 9,673,144 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364879,585,629 - 9,674,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTRL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11261,133,576 - 261,227,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21293,325,194 - 293,380,553 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTRL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,406,871 - 18,498,100 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1218,407,302 - 18,490,531 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603524,514,094 - 24,612,999 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntrl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476014,098,553 - 14,178,745 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cntrl
618 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:88
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000007776
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
11528620Bss113Bone structure and strength QTL 1139.752e-10femur morphology trait (VT:0000559)femoral neck width (CMO:0001695)31649064819241681Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)31043430624512004Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat

Markers in Region
BQ203380  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8338,834,834 - 38,835,022 (+)Marker Load Pipeline
mRatBN7.2318,437,356 - 18,437,544 (+)MAPPERmRatBN7.2
Rnor_6.0314,308,681 - 14,308,868NCBIRnor6.0
Rnor_5.0319,627,198 - 19,627,385UniSTSRnor5.0
RGSC_v3.4314,179,135 - 14,179,322UniSTSRGSC3.4
Celera313,156,580 - 13,156,767UniSTS
RH 3.4 Map3164.2UniSTS
Cytogenetic Map3p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001837083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007776   ⟹   ENSRNOP00000007776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,428,103 - 18,496,563 (+)Ensembl
Rnor_6.0 Ensembl314,304,591 - 14,370,990 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092745   ⟹   ENSRNOP00000076019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,428,103 - 18,500,380 (+)Ensembl
Rnor_6.0 Ensembl314,299,479 - 14,371,681 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl314,353,038 - 14,354,402 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl314,364,532 - 14,368,169 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116543   ⟹   ENSRNOP00000078037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,454,606 - 18,483,355 (+)Ensembl
RefSeq Acc Id: NM_001427179   ⟹   NP_001414108
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,627 - 38,897,835 (+)NCBI
RefSeq Acc Id: XM_039106227   ⟹   XP_038962155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,773 - 38,897,835 (+)NCBI
mRatBN7.2318,428,342 - 18,500,362 (+)NCBI
RefSeq Acc Id: XM_039106229   ⟹   XP_038962157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,897,835 (+)NCBI
mRatBN7.2318,428,147 - 18,500,362 (+)NCBI
RefSeq Acc Id: XM_039106230   ⟹   XP_038962158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,897,835 (+)NCBI
mRatBN7.2318,428,147 - 18,500,362 (+)NCBI
RefSeq Acc Id: XM_039106231   ⟹   XP_038962159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,897,835 (+)NCBI
mRatBN7.2318,428,147 - 18,500,362 (+)NCBI
RefSeq Acc Id: XM_039106233   ⟹   XP_038962161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,894,323 (+)NCBI
mRatBN7.2318,428,147 - 18,496,850 (+)NCBI
RefSeq Acc Id: XM_039106235   ⟹   XP_038962163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,872,285 (+)NCBI
mRatBN7.2318,428,147 - 18,474,806 (+)NCBI
RefSeq Acc Id: XM_063283970   ⟹   XP_063140040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,897,159 (+)NCBI
RefSeq Acc Id: XM_063283971   ⟹   XP_063140041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,825,575 - 38,890,797 (+)NCBI
Ensembl Acc Id: ENSRNOP00000076019   ⟸   ENSRNOT00000092745
Ensembl Acc Id: ENSRNOP00000007776   ⟸   ENSRNOT00000007776
RefSeq Acc Id: XP_038962157   ⟸   XM_039106229
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962159   ⟸   XM_039106231
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962158   ⟸   XM_039106230
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962161   ⟸   XM_039106233
- Peptide Label: isoform X5
- UniProtKB: A6JUE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962163   ⟸   XM_039106235
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038962155   ⟸   XM_039106227
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWU0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078037   ⟸   ENSRNOT00000116543
RefSeq Acc Id: XP_063140040   ⟸   XM_063283970
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140041   ⟸   XM_063283971
- Peptide Label: isoform X6
- UniProtKB: A6JUE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414108   ⟸   NM_001427179
- UniProtKB: A0A1B0GWU0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A619-F1-model_v2 AlphaFold D4A619 1-2336 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692020
Promoter ID:EPDNEW_R2539
Type:initiation region
Name:Cntrl_1
Description:centriolin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0314,299,479 - 14,299,539EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305317 AgrOrtholog
BioCyc Gene G2FUF-50063 BioCyc
Ensembl Genes ENSRNOG00000022015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007776 ENTREZGENE
  ENSRNOT00000007776.7 UniProtKB/TrEMBL
  ENSRNOT00000092745 ENTREZGENE
  ENSRNOT00000092745.2 UniProtKB/TrEMBL
  ENSRNOT00000116543.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  SDS22/Internalin_LRR UniProtKB/TrEMBL
NCBI Gene 311886 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
Pfam LRR_9 UniProtKB/TrEMBL
PhenoGen Cntrl PhenoGen
PROSITE LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022015 RatGTEx
SMART LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A1B0GWU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKF6_RAT UniProtKB/TrEMBL
  A6JUE6 ENTREZGENE, UniProtKB/TrEMBL
  D4A619_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-03 Cntrl  centriolin  Cep110  centrosomal protein 110  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Cep110  centrosomal protein 110  Cep110  centrosomal protein 110kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Cep110  centrosomal protein 110kDa  Cep110  centrosomal protein 110  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Cep110  centrosomal protein 110  Cep1_predicted  centrosomal protein 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Cep1_predicted  centrosomal protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED