Cdkn2aip (CDKN2A interacting protein)

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Gene: Cdkn2aip (CDKN2A interacting protein) Rattus norvegicus

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Symbol:

Cdkn2aip

Name:

CDKN2A interacting protein

RGD ID:

1305302

Description:

Predicted to enable p53 binding activity. Predicted to be involved in several processes, including DNA damage response; regulation of cell growth; and regulation of protein stability. Predicted to be located in granular component. Predicted to be active in nucleolus and nucleoplasm. Orthologous to human CDKN2AIP (CDKN2A interacting protein); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CDKN2A-interacting protein; collaborator of ARF; LOC306455; MGC112660; RGD1305302; similar to RIKEN cDNA 4921511I16

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDKN2AIP (CDKN2A interacting protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cdkn2aip (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdkn2aip (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDKN2AIP (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDKN2AIP (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdkn2aip (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDKN2AIP (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDKN2AIP (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdkn2aip (CDKN2A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cdkn2aip (CDKN2A interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CDKN2AIP (CDKN2A interacting protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	cdkn2aip (CDKN2A interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdkn2aip	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	51,266,613 - 51,274,051 (+)	NCBI		GRCr8
mRatBN7.2	16	44,536,147 - 44,546,216 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	44,536,234 - 44,540,033 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	49,942,563 - 49,945,841 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	53,303,121 - 53,306,399 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	48,578,403 - 48,581,681 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	47,664,864 - 47,670,935 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	47,665,816 - 47,669,093 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	47,385,297 - 47,390,428 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	47,746,221 - 47,749,499 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	47,746,295 - 47,749,573 (+)	NCBI
Celera	16	42,547,908 - 42,551,186 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cisplatin (ISO)

clotrimazole (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

disulfiram (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

ivermectin (ISO)

leflunomide (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valdecoxib (EXP)

valproic acid (ISO)

withaferin A (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (ISO,ISS)

negative regulation of cell growth (ISO)

positive regulation of cell growth (ISO,ISS)

positive regulation of signal transduction (ISO)

regulation of protein stability (ISO)

Cellular Component

granular component (ISO)

nucleolus (IBA,ISO)

nucleoplasm (IBA,IEA,ISO)

nucleus (ISO)

Molecular Function

p53 binding (ISO)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12154087	PMID:12581788	PMID:15109303	PMID:24825908

Genomics

Comparative Map Data

Cdkn2aip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	51,266,613 - 51,274,051 (+)	NCBI		GRCr8
mRatBN7.2	16	44,536,147 - 44,546,216 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	44,536,234 - 44,540,033 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	49,942,563 - 49,945,841 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	53,303,121 - 53,306,399 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	48,578,403 - 48,581,681 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	47,664,864 - 47,670,935 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	47,665,816 - 47,669,093 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	47,385,297 - 47,390,428 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	47,746,221 - 47,749,499 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	47,746,295 - 47,749,573 (+)	NCBI
Celera	16	42,547,908 - 42,551,186 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

CDKN2AIP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	183,444,636 - 183,449,064 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	183,444,635 - 183,449,064 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	184,365,789 - 184,370,217 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	184,602,783 - 184,606,043 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	181,698,578 - 181,701,840 (+)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	180,125,202 - 180,128,464 (+)	NCBI		HuRef
CHM1_1	4	184,342,508 - 184,345,773 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	186,787,446 - 186,791,876 (+)	NCBI		T2T-CHM13v2.0

Cdkn2aip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	48,162,379 - 48,166,966 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	48,162,379 - 48,166,967 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	47,709,344 - 47,713,931 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	47,709,344 - 47,713,932 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	48,794,698 - 48,799,285 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	49,208,265 - 49,212,716 (-)	NCBI		MGSCv36	mm8
Celera	8	50,386,813 - 50,391,398 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	26.88	NCBI

Cdkn2aip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	25,363,658 - 25,366,295 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	25,363,170 - 25,366,481 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDKN2AIP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	181,174,659 - 181,182,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	181,542,613 - 181,547,414 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	175,621,561 - 175,626,138 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	187,848,211 - 187,853,533 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	187,848,215 - 187,852,673 (+)	Ensembl	panpan1.1		panPan2

CDKN2AIP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	46,899,146 - 46,903,523 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	46,900,521 - 46,903,339 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	47,332,264 - 47,336,599 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	49,122,256 - 49,126,587 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	49,123,024 - 49,126,616 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	47,084,374 - 47,088,704 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	47,699,883 - 47,704,220 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	47,834,077 - 47,838,409 (-)	NCBI		UU_Cfam_GSD_1.0

Cdkn2aip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	32,467,590 - 32,471,315 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	5,639,448 - 5,642,092 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	5,638,671 - 5,642,276 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDKN2AIP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	44,886,692 - 44,892,246 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	44,885,603 - 44,890,504 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	51,498,582 - 51,503,462 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDKN2AIP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	129,429,535 - 129,433,687 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	129,429,533 - 129,435,285 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	109,642,769 - 109,647,398 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdkn2aip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624769	14,214,103 - 14,217,508 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdkn2aip
38 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	83
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000030519
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
631833	Sach2	Saccharin preference QTL 2	4	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake rate (CMO:0001613)	16	43024842	50166018	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

RH132170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	44,539,280 - 44,539,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	47,668,863 - 47,669,079	NCBI	Rnor6.0
Rnor_5.0	16	47,388,356 - 47,388,572	UniSTS	Rnor5.0
RGSC_v3.4	16	47,749,268 - 47,749,484	UniSTS	RGSC3.4
Celera	16	42,550,955 - 42,551,171	UniSTS
Cytogenetic Map	16	q11	UniSTS

Cdkn2aip

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	44,539,051 - 44,539,594 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	47,668,634 - 47,669,176	NCBI	Rnor6.0
Rnor_5.0	16	47,388,127 - 47,388,669	UniSTS	Rnor5.0
RGSC_v3.4	16	47,749,039 - 47,749,581	UniSTS	RGSC3.4
Celera	16	42,550,726 - 42,551,268	UniSTS
Cytogenetic Map	16	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030519 ⟹ ENSRNOP00000029705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	44,536,362 - 44,540,033 (+)	Ensembl
Rnor_6.0 Ensembl	16	47,665,816 - 47,669,093 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108326 ⟹ ENSRNOP00000093999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	44,536,234 - 44,539,313 (+)	Ensembl

RefSeq Acc Id:

NM_001014000 ⟹ NP_001014022

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	51,268,932 - 51,272,210 (+)	NCBI
mRatBN7.2	16	44,536,234 - 44,539,512 (+)	NCBI
Rnor_6.0	16	47,665,816 - 47,669,094 (+)	NCBI
Rnor_5.0	16	47,385,297 - 47,390,428 (+)	NCBI
RGSC_v3.4	16	47,746,221 - 47,749,499 (+)	RGD
Celera	16	42,547,908 - 42,551,186 (+)	RGD

Sequence:

show sequence

CGCCTGCCCCTCAGTCGCCTCGGCTCCGCCTCAGCCGGGCGCGCCCTCCGACCGAGGTGGGCGC
AACCGCTGAGTCGCCGGCGGCTGGGCGCTGCAAAGCATCCTGGGAGAACGCGCTCGCGCCGGAA
GGGCGCGCGAGTGCGCGGCGGCAGCGAGGTTATAAAAGGGAGCGAGCCAGCGGCAGGCGGAAGT
GGGCGGTTCGTCGGCGCCTTGTTCTGTTGTTTGGTGTTTGGGCTTCTGGAGGGGCGTTCTCGGG
AGGGCCGCCGGTGCAGGCCGCGCTGACAGGGCCGCTCGCCGCTCCGCCCTGTGCGCTCGCGCTC
TCCTCGTCTCGCAGGGTCCCAACATGGCGCAGGAGGTATCCGAGTACCTGAGCCAGAACCCGCG
AGTAGCCGCCTGGGTGGAGACCCTTCGCTGCGAGGGCGAGACGGACAAACACTGGCGCCACCGC
CGGGAGTTTCTGCTTCGCAATGCCGGGGACCTGGTCCCCGCGACCGAGGAGACTGCGGACGCGG
AAAGCGGAGCCCGCAGTCGGCAGCTACAGCAGCTCGTCTCCTTCTCCATGGCCTGGGCAAACCA
TGTCTTCCTAGGGTGCCGGTACCCTCAAAAAGTTATGGATAAAATTCTTAGTATGGCTGAAGGC
ATCAAAGTGACAGATGCTCCAATCCATACCACACGAGACGAACTGGTTGCCAAGGTGAAGAAAA
GAGGGATATCGAGTAGCAATGAAGGGGTAGAAGAGCCATCCAAAAAACGATCCATAGAAGGAAA
AAACAATTCTTCAGTTGAGCGAGATCATGGGAAAAAATCTGCCAAAACAGATCGTTCAGCTCAG
CAAGAAAACAGTTCAGGATCCAAGGGGTCGTCCACCAAATCAGAGAGTAGTGGGACCTCAGCTC
GGAGCAACTCTGGTGTCTCCCATCAGAATAGTTCCACAAGTGAAGGCGATAGATCTGTTTGCAG
CCAAAGCAGCAGCAATTCCTCTCAGGTAACATCAGCAGGGTCTGGAAAAGCTTCTGAGCCAGAA
GCTCCAGATAAACATGGTTCAGCATCCTTTGTTTCTTCACTGTTAAAATCCAGTCTGAATAGTC
ATGTGACGAAATCCACTGATTCCAGACAGCATAGTGGATCACCTAGAAAGAATGCTTTGGAAGG
TTCTTCAGTTTCAGTTTCTCAGAGCAGCTCAGAGATTGAGGTGCCCTTGTTGGGTTCCTCCGGA
AGCTCAGAAGTAGAGTTGCCATTACTGTCTTGTAAGTCTAGTTCAGAGACAGCTTCGAGTGGGT
TAACAACCAAAGCTAGTTCAGAGGCAAACATTTCATCATCAGTTTCTAAAAACAGTTCCTCATC
AGGCACCTCTTTACTAATGCCCAAGAGCAGTTCAACAAATACATCACTACTGACTTCTCAGGTA
GCTGCATCACTGTTAGCTTCCAAAAGCAGCTCCCAGAGCAGTGGATCTGTGGCTTCCAAAAGCA
CTTCCTTAGGAAGCATGTCTCAGCTAGCTTCTAAGAGTAGTTCTCAGAGTAGCACTTCACAGTT
GCCTTCTAAAAGTACCTCACAGTCCAGTGAGAGTTCTGTCAAATTCACTTGTCGGAAGTTAACC
AATGAAGACATAAAGCAGAAGCAGCCTTTCTTCAATAGACTGTATAAGACAGTGGCGTGGAAGT
TGGTAGCAGTTGGTGGCTTTAGCCCCAATGTGAATCATGGCGAGCTGCTAAATGCAGCTATTGA
GGCTCTGAAAGCAACACTAGATGTGTTTTTTGTCCCACTGAAAGAACTGGCAGATCTGCCTCAA
AATAAGAGCTCTCAAGAAAGTATTGTATGTGAATTGAGGTGTAAATCGGTGTATTTGGGCACTG
GCTGTGGGAAAAGCAAAGAAAATGCAAAAGCAGTCGCATCAAGAGAGGCACTTAAGTTATTTCT
CAAGAAGAAGGTGGTGGTAAAGATCTGTAAAAGGAAGTACAGAGGCAATGAGATAGAAGATCTA
GTACTCCTCGATGAAGAATCAAGACCTGTAAACTTACCTCCAGCACTGAAACATCCTCAAGAAT
TACTGTGATTCCCCAAGGTATCACTGCATCCAGTACCTGGGGTTTGAAGAGAAAAACTGGCTTT
TATATGAAACACTGGCTTTCACAGATTTTATATTGCTTTTTTCCAGTTTTGCAGAAAATTTAAA
TTCTAGTTCTCTTCATTAAAGTAGAGCTGTAAATAATTTATGAATGACAGTGCATATTAAAGGG
TATACACTGACAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253147 ⟹ XP_006253209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	51,266,613 - 51,272,768 (+)	NCBI
mRatBN7.2	16	44,536,149 - 44,541,353 (+)	NCBI
Rnor_6.0	16	47,664,864 - 47,670,935 (+)	NCBI
Rnor_5.0	16	47,385,297 - 47,390,428 (+)	NCBI

Sequence:

show sequence

GAAAATTCAATCACATAATTTATCACTATTCATATTATTACACTCATGCTTTGATTTCACTAAT
ATTATACATATAACTAAACTTGGAAATGTTAATAAACACACCAGCAACTAAAAAACCACGGGTT
GGAGAGTTGGCTCCGCCGTACCCGCAGATCTTCAAGAAGACCTGGGTTCAATTCCCAGAACCCA
CACGGCGCTCAAAATCCCGCATCACTTCAACTCCAGATCCATAGCCCTCTTGCGTCCAAGGGCA
TCAGACATGTACATAAAGCACAGGCAGACATGCAAGCAAAAACATGGAACACATAAAAGTGCAA
AAGCACAGTTGCTCTTGAGGGAAGAGGCCGGGCAGACGAGATAAGCAGATACATTTCCACTTTG
GTCCTACCGGCGTTAACAGCTAAAAGCAGTTGACATAGGGTTGTTTATAGCTTGAGGACCAAAA
ACGTTAGGGGAGAGGAAGCAGGTATTGTCTGGGTTGAACCAGGAACCTAAGAAACCGCGGAAAC
CAAGCCAGATCGTGCGGCGCAGGCGCAAAGGTCGTCTGGCTTTAAATAAACTGGAGGAGTAGCT
TGTGCTTGCCGGTTAAGTTACATTCGTGCTTAGTACTTTTATTGCCCCTGCCGCTCAAGACATC
CATCCCCACGTCCCCAAACGCCCCGAGACTTTCCTGGCCTCGGGACACTGGGTTTACTTCCCCC
GGTACACAGCAGCTCTTGAGGCAGGGCGGCCATGGAAGCCAGCTTTTGTTTATTTTGGCCGCGC
GCGACTGCGAGTGTCCGAGGGCGGAGACGCGCAGGCGGAGCGGCGACTCCCGCGACGCCAGGTC
TCCGCGTTCCGCCCGCGGTCGCCAAGCCCGGGGGCGGAAACAGAGCCCGGCGTCACAAAGCGCC
GCCGGAACGCTGAGGCTGCCGCACTGGCGCCGCGCGCCCTCTCAGGGCGGGAGGCACGCCTGCC
CCTCAGTCGCCTCGGCTCCGCCTCAGCCGGGCGCGCCCTCCGACCGAGGTGGGCGCAACCGCTG
AGTCGCCGGCGGCTGGGCGCTGCAAAGCATCCTGGGAGAACGCGCTCGCGCCGGAAGGGCGCGC
GAGTGCGCGGCGGCAGCGAGGTTATAAAAGGGAGCGAGCCAGCGGCAGGCGGAAGTGGGCGGTT
CGTCGGCGCCTTGTTCTGTTGTTTGGTGTTTGGGCTTCTGGAGGGGCGTTCTCGGGAGGGCCGC
CGGTGCAGGCCGCGCTGACAGGGCCGCTCGCCGCTCCGCCCTGTGCGCTCGCGCTCTCCTCGTC
TCGCAGGGTCCCAACATGGCGCAGGAGGTATCCGAGTACCTGAGCCAGAACCCGCGAGTAGCCG
CCTGGGTGGAGACCCTTCGCTGCGAGGGCGAGACGGACAAACACTGGCGCCACCGCCGGGAGTT
TCTGCTTCGCAATGCCGGGGACCTGGTCCCCGCGACCGAGGAGACTGCGGACGCGGAAAGCGGA
GCCCGCAGTCGGCAGCTACAGCAGCTCGTCTCCTTCTCCATGGCCTGGGCAAACCATGTCTTCC
TAGGGTGCCGGTACCCTCAAAAAGTTATGGATAAAATTCTTAGTATGGCTGAAGGCATCAAAGT
GACAGATGCTCCAATCCATACCACACGAGACGAACTGGTTGCCAAGAAGGGGTAGAAGAGCCAT
CCAAAAAACGATCCATAGAAGGAAAAAACAATTCTTCAGTTGAGCGAGATCATGGGAAAAAATC
TGCCAAAACAGATCGTTCAGCTCAGCAAGAAAACAGTTCAGGATCCAAGGGGTCGTCCACCAAA
TCAGAGAGTAGTGGGACCTCAGCTCGGAGCAACTCTGGTGTCTCCCATCAGAATAGTTCCACAA
GTGAAGGCGATAGATCTGTTTGCAGCCAAAGCAGCAGCAATTCCTCTCAGGTAACATCAGCAGG
GTCTGGAAAAGCTTCTGAGCCAGAAGCTCCAGATAAACATGGTTCAGCATCCTTTGTTTCTTCA
CTGTTAAAATCCAGTCTGAATAGTCATGTGACGAAATCCACTGATTCCAGACAGCATAGTGGAT
CACCTAGAAAGAATGCTTTGGAAGGTTCTTCAGTTTCAGTTTCTCAGAGCAGCTCAGAGATTGA
GGTGCCCTTGTTGGGTTCCTCCGGAAGCTCAGAAGTAGAGTTGCCATTACTGTCTTGTAAGTCT
AGTTCAGAGACAGCTTCGAGTGGGTTAACAACCAAAGCTAGTTCAGAGGCAAACATTTCATCAT
CAGTTTCTAAAAACAGTTCCTCATCAGGCACCTCTTTACTAATGCCCAAGAGCAGTTCAACAAA
TACATCACTACTGACTTCTCAGGTAGCTGCATCACTGTTAGCTTCCAAAAGCAGCTCCCAGAGC
AGTGGATCTGTGGCTTCCAAAAGCACTTCCTTAGGAAGCATGTCTCAGCTAGCTTCTAAGAGTA
GTTCTCAGAGTAGCACTTCACAGTTGCCTTCTAAAAGTACCTCACAGTCCAGTGAGAGTTCTGT
CAAATTCACTTGTCGGAAGTTAACCAATGAAGACATAAAGCAGAAGCAGCCTTTCTTCAATAGA
CTGTATAAGACAGTGGCGTGGAAGTTGGTAGCAGTTGGTGGCTTTAGCCCCAATGTGAATCATG
GCGAGCTGCTAAATGCAGCTATTGAGGCTCTGAAAGCAACACTAGATGTGTTTTTTGTCCCACT
GAAAGAACTGGCAGATCTGCCTCAAAATAAGAGCTCTCAAGAAAGTATTGTATGTGAATTGAGG
TGTAAATCGGTGTATTTGGGCACTGGCTGTGGGAAAAGCAAAGAAAATGCAAAAGCAGTCGCAT
CAAGAGAGGCACTTAAGTTATTTCTCAAGAAGAAGGTGGTGGTAAAGATCTGTAAAAGGAAGTA
CAGAGGCAATGAGATAGAAGATCTAGTACTCCTCGATGAAGAATCAAGACCTGTAAACTTACCT
CCAGCACTGAAACATCCTCAAGAATTACTGTGATTCCCCAAGGTATCACTGCATCCAGTACCTG
GGGTTTGAAGAGAAAAACTGGCTTTTATATGAAACACTGGCTTTCACAGATTTTATATTGCTTT
TTTCCAGTTTTGCAGAAAATTTAAATTCTAGTTCTCTTCATTAAAGTAGAGCTGTAAATAATTT
ATGAATGACAGTGCATATTAAAGGGTATACACTGACAGCATACCAGTGTGCTGTTTTATTTGCT
GAGGAAAATACTGTCTTCTATTTTTAATGATATATTAGGTACGATGTGTAGTTCTGTAGAATCT
TAAAATTTTTGTACTACTACCAATTTGGTAGAAATGTATTAAGTTGTCTACCATGCTTTTTTTT
CTAACTTGATTAAATCATATAAAAGAAAGGGGACCACAGTATTTGAATGTGTGAAAAATATACA
ACTTAAGGTTTTAAGAATGTTACTCATAATGTTGAACATCTCTTAAAGAATAAGAGTAATTGTC
TCAAACTATTTTCATGAGAAGATGCTGTAAACTTTTTTTTTTTAGATATAAAGCAGTATAAAGT
ACTTATTGTTATTTTATTCTGAAATTGTTTAAAATTCACCATGATTTTGACCGCTGCAGATTCT
TGAGCAGGTTAATTTATGTTTTGAGGTAAAAAGCAATTTACACTTTCTTAAAACATAATGTTGA
TTTCTATATTAAGCATATTTTGTGACTACTATGAACAGACTGATTTGTTTAGATATTAAATGCT
TTAAGCTATTTTACCTTTTCAAGAGGTTGTGTTTTTTTTTTCCCACCCTGAAGTCATAACTAAG
TCTTGTAAGTTGGCTCCTCACTACTATTCAAAGTAAACTACAACCAAGTAGTTTTCATAGTATA
TAATATACATTTTTATAAATAGGGAAGTTAAAGTTTATATCTAGAACCAGGTGGTTTTTGTATT
TGCAGATTTCAGAAGAATGTGGAGAAGACTAGAGAGCCATGGTCAGTTCTTTAATGATTGTGTA
TTCGTGTGGACTGCATCTGTTAGTAATGAAGTAAAATCTGTATCTTAGGTGACTCTTAATTAAA
AGTCTGGTCTAAGGTATATGACTTCGGGCCTTCTGGCTTTCTAGGAGCTGCACACCAAACAGTA
ATGGAGATAGTATGCAGTAAAAAGACCTCATTCACTAGTTGTATTGGTATTGGAAGGTTGGACA
TAAGCACAGTTTAAGTGTATAAAAATTATTTTGTAGTTTAAGAATAATAAAGATGTTTAGTTTC
CTGAGCTTGAACTGAAATAATCAGGGATGTTTGTAATTTGCCAGATGACATTTTTAAATTATTT
GTTTTTGAGAATGGTTCATTGGATACCAGAGCAAAATCTATATTCTGTAAATGGGCTACCTTTA
TATATTGTGGAAAGCAATAATATAAGTGAGTTGTAAACTTTGTAAACTAATGCTTACAAAAAAG
TGAGCCAAAAAGTAGAATAAATAAATTTCTGAAATACATCATACTAGATGATTTGGTAATTTCC
TAAAATGGTTTGTTTTAAGCAAATTCTTTAAATAATAGTAATCTTTTGATGTGGAGGAGTGCGT
GCACTCATAGACATATAATTTCAACTTCTTGAGAGGCCAAGTCAAGAAGAGCTGAGGACTTTGA
GTGTTTGACTATAGAGCAGTTTGAGAAAAGTAAACAGGTTCTGAGCTATAAGTCTTATGACAGT
GGTGGGGCATGTCTTTAATCCCAACACTCAGAAGGCAGAAGCAGGCAGATCTCTGAGGAACCCT
GCCAAGAAAAGGGTAGGTGATAGAGTGCTTACTTAGCATACAGGGCCCTAAGTTGAATTTCCAG
TACCTTCCATAAAACAAAAATAAATGAAAACTGATGATCTATGTTCTTGGTGTTTGAGAGATAG
GGTGTTATATGGTTCTGGCTGGTCTTGAACTTGGAAAGTAGCGTTGCGTTCCTTTCTCTGTTTC
ATGTTGGGGTTACAGCTGTTTGACCACTCCTATGGTTATAGTGTTTATTTGTACAACATGCTCT
TAATAAAAATTTAAAGATCCCCGTG

hide sequence

RefSeq Acc Id:

XM_039094518 ⟹ XP_038950446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	51,266,613 - 51,274,051 (+)	NCBI
mRatBN7.2	16	44,536,147 - 44,546,216 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014022	(Get FASTA)	NCBI Sequence Viewer
	XP_006253209	(Get FASTA)	NCBI Sequence Viewer
	XP_038950446	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85832	(Get FASTA)	NCBI Sequence Viewer
	AAH98694	(Get FASTA)	NCBI Sequence Viewer
	EDL78913	(Get FASTA)	NCBI Sequence Viewer
	EDL78914	(Get FASTA)	NCBI Sequence Viewer
	EDL78915	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029705.4
	ENSRNOP00000093999.1
	ENSRNOP00055015517
	ENSRNOP00060011291
	ENSRNOP00065019043
GenBank Protein	Q5U2X0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014022 ⟸ NM_001014000

- UniProtKB:

Q4KM89 (UniProtKB/Swiss-Prot), Q5U2X0 (UniProtKB/Swiss-Prot), A6JPK7 (UniProtKB/TrEMBL), A0A8I6AJX9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQEVSEYLSQNPRVAAWVETLRCEGETDKHWRHRREFLLRNAGDLVPATEETADAESGARSRQ
LQQLVSFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPIHTTRDELVAKVKKRGISSSNE
GVEEPSKKRSIEGKNNSSVERDHGKKSAKTDRSAQQENSSGSKGSSTKSESSGTSARSNSGVSH
QNSSTSEGDRSVCSQSSSNSSQVTSAGSGKASEPEAPDKHGSASFVSSLLKSSLNSHVTKSTDS
RQHSGSPRKNALEGSSVSVSQSSSEIEVPLLGSSGSSEVELPLLSCKSSSETASSGLTTKASSE
ANISSSVSKNSSSSGTSLLMPKSSSTNTSLLTSQVAASLLASKSSSQSSGSVASKSTSLGSMSQ
LASKSSSQSSTSQLPSKSTSQSSESSVKFTCRKLTNEDIKQKQPFFNRLYKTVAWKLVAVGGFS
PNVNHGELLNAAIEALKATLDVFFVPLKELADLPQNKSSQESIVCELRCKSVYLGTGCGKSKEN
AKAVASREALKLFLKKKVVVKICKRKYRGNEIEDLVLLDEESRPVNLPPALKHPQELL

hide sequence

RefSeq Acc Id:	XP_006253209 ⟸ XM_006253147
- Peptide Label:	isoform X2
- UniProtKB:	Q5U2X0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAQEVSEYLSQNPRVAAWVETLRCEGETDKHWRHRREFLLRNAGDLVPATEETADAESGARSRQ LQQLVSFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPIHTTRDELVAKKG hide sequence

Ensembl Acc Id:

ENSRNOP00000029705 ⟸ ENSRNOT00000030519

RefSeq Acc Id:	XP_038950446 ⟸ XM_039094518
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000093999 ⟸ ENSRNOT00000108326

Protein Domains

DRBM XRN2-binding (XTBD)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2X0-F1-model_v2	AlphaFold	Q5U2X0	1-570	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700087

Promoter ID:

EPDNEW_R10611

Type:

initiation region

Name:

Cdkn2aip_2

Description:

CDKN2A interacting protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10612

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	47,665,780 - 47,665,840	EPDNEW

RGD ID:

13700088

Promoter ID:

EPDNEW_R10612

Type:

initiation region

Name:

Cdkn2aip_1

Description:

CDKN2A interacting protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10611

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	47,666,005 - 47,666,065	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305302	AgrOrtholog
BioCyc Gene	G2FUF-11411	BioCyc
Ensembl Genes	ENSRNOG00000022736	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055011343	UniProtKB/Swiss-Prot
	ENSRNOG00060008744	UniProtKB/Swiss-Prot
	ENSRNOG00065014756	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000030519.5	UniProtKB/Swiss-Prot
	ENSRNOT00000108326.1	UniProtKB/TrEMBL
	ENSRNOT00055019244	UniProtKB/Swiss-Prot
	ENSRNOT00060014637	UniProtKB/Swiss-Prot
	ENSRNOT00065024398	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134740	IMAGE-MGC_LOAD
InterPro	dsRBD_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	XTBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:306455	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94451	IMAGE-MGC_LOAD
NCBI Gene	306455	ENTREZGENE
PANTHER	CDKN2A-INTERACTING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NF-KAPPA-B-REPRESSING FACTOR-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	XTBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cdkn2aip	PhenoGen
PROSITE	DS_RBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	XTBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022736	RatGTEx
	ENSRNOG00055011343	RatGTEx
	ENSRNOG00060008744	RatGTEx
	ENSRNOG00065014756	RatGTEx
UniProt	A0A8I6AJX9	ENTREZGENE, UniProtKB/TrEMBL
	A6JPK7	ENTREZGENE, UniProtKB/TrEMBL
	CARF_RAT	UniProtKB/Swiss-Prot
	Q4KM89	ENTREZGENE
	Q5U2X0	ENTREZGENE
UniProt Secondary	Q4KM89	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Cdkn2aip	CDKN2A interacting protein	RGD1305302	similar to RIKEN cDNA 4921511I16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1305302	similar to RIKEN cDNA 4921511I16	RGD1305302_predicted	similar to RIKEN cDNA 4921511I16 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305302_predicted	similar to RIKEN cDNA 4921511I16 (predicted)	LOC306455_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC306455_predicted	similar to RIKEN cDNA 4921511I16 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar