Cherp (calcium homeostasis endoplasmic reticulum protein) - Rat Genome Database

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Gene: Cherp (calcium homeostasis endoplasmic reticulum protein) Rattus norvegicus
Analyze
Symbol: Cherp
Name: calcium homeostasis endoplasmic reticulum protein
RGD ID: 1305279
Description: Predicted to enable transmembrane transporter binding activity. Predicted to be involved in intracellular calcium ion homeostasis; positive regulation of calcineurin-NFAT signaling cascade; and release of sequestered calcium ion into cytosol. Predicted to act upstream of or within negative regulation of cell population proliferation. Located in sarcoplasmic reticulum membrane. Orthologous to human CHERP (calcium homeostasis endoplasmic reticulum protein); PARTICIPATES IN spliceosome pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC290614
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21617,367,455 - 17,380,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,367,455 - 17,380,507 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,435,991 - 17,449,041 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,567,132 - 18,580,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,488,911 - 17,501,961 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,068,783 - 19,081,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,068,783 - 19,081,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,931,534 - 18,944,588 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,785,631 - 17,798,683 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,785,627 - 17,798,334 (+)NCBI
Celera1617,587,224 - 17,600,285 (+)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Identification of novel ryanodine receptor 1 (RyR1) protein interaction with calcium homeostasis endoplasmic reticulum protein (CHERP). Ryan T, etal., J Biol Chem. 2011 May 13;286(19):17060-8. doi: 10.1074/jbc.M110.197186. Epub 2011 Mar 14.
Additional References at PubMed
PMID:10794731   PMID:12656674   PMID:19946888   PMID:22658674   PMID:22681889   PMID:25931508   PMID:30361391   PMID:31505169  


Genomics

Comparative Map Data
Cherp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21617,367,455 - 17,380,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,367,455 - 17,380,507 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,435,991 - 17,449,041 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,567,132 - 18,580,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,488,911 - 17,501,961 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,068,783 - 19,081,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,068,783 - 19,081,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,931,534 - 18,944,588 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,785,631 - 17,798,683 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,785,627 - 17,798,334 (+)NCBI
Celera1617,587,224 - 17,600,285 (+)NCBICelera
Cytogenetic Map16p14NCBI
CHERP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,517,894 - 16,542,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,517,894 - 16,542,437 (-)EnsemblGRCh38hg38GRCh38
GRCh371916,628,705 - 16,653,248 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,489,700 - 16,514,263 (-)NCBINCBI36Build 36hg18NCBI36
Build 341916,489,705 - 16,514,248NCBI
Celera1916,530,540 - 16,555,103 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,197,286 - 16,221,850 (-)NCBIHuRef
CHM1_11916,628,185 - 16,652,748 (-)NCBICHM1_1
T2T-CHM13v2.01916,652,683 - 16,677,227 (-)NCBIT2T-CHM13v2.0
Cherp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,214,327 - 73,229,077 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl873,214,333 - 73,229,070 (-)EnsemblGRCm39 Ensembl
GRCm38872,460,483 - 72,475,233 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,460,489 - 72,475,226 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,984,382 - 74,999,132 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,389,472 - 75,404,124 (-)NCBIMGSCv36mm8
Celera876,803,131 - 76,819,801 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map835.08NCBI
Cherp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,224,897 - 1,234,758 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,224,698 - 1,235,192 (+)NCBIChiLan1.0ChiLan1.0
CHERP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11920,396,716 - 20,426,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,008,527 - 16,032,755 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,988,199 - 17,011,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,988,200 - 17,011,888 (-)Ensemblpanpan1.1panPan2
CHERP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,002,532 - 46,020,445 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,002,617 - 46,019,588 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,915,922 - 45,934,528 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,489,430 - 46,508,037 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,489,507 - 46,508,032 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,724,623 - 45,743,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,135,365 - 46,153,990 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,410,698 - 46,429,302 (+)NCBIUU_Cfam_GSD_1.0
Cherp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,534,844 - 204,554,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,083,920 - 4,103,990 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365964,084,091 - 4,102,096 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHERP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,063,004 - 61,083,424 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,062,960 - 61,083,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,649,516 - 60,665,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHERP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,027,733 - 15,051,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,028,902 - 15,051,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,419,591 - 4,443,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cherp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908926,067 - 936,762 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908926,055 - 937,221 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cherp
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:114
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000017424
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat

Markers in Region
RH128504  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,379,749 - 17,379,937 (+)MAPPERmRatBN7.2
Rnor_6.01619,081,080 - 19,081,267NCBIRnor6.0
Rnor_5.01618,943,831 - 18,944,018UniSTSRnor5.0
RGSC_v3.41617,797,926 - 17,798,113UniSTSRGSC3.4
Celera1617,599,528 - 17,599,715UniSTS
RH 3.4 Map16213.62UniSTS
Cytogenetic Map16p14UniSTS
RH131910  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,365,770 - 17,365,967 (+)MAPPERmRatBN7.2
Rnor_6.01619,067,099 - 19,067,295NCBIRnor6.0
Rnor_5.01618,929,850 - 18,930,046UniSTSRnor5.0
RGSC_v3.41617,783,947 - 17,784,143UniSTSRGSC3.4
Celera1617,585,540 - 17,585,736UniSTS
RH 3.4 Map16179.8UniSTS
Cytogenetic Map16p14UniSTS
AI713000  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,380,235 - 17,380,425 (+)MAPPERmRatBN7.2
Rnor_6.01619,081,566 - 19,081,755NCBIRnor6.0
Rnor_5.01618,944,317 - 18,944,506UniSTSRnor5.0
RGSC_v3.41617,798,412 - 17,798,601UniSTSRGSC3.4
Celera1617,600,014 - 17,600,203UniSTS
Cytogenetic Map16p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 37 31 13 31 1 66 27 37 3
Low 9 20 10 6 10 8 10 8 8 4 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017424   ⟹   ENSRNOP00000017424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,367,455 - 17,380,507 (+)Ensembl
Rnor_6.0 Ensembl1619,068,783 - 19,081,837 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110673   ⟹   ENSRNOP00000087633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,367,455 - 17,380,507 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114844   ⟹   ENSRNOP00000079307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,367,522 - 17,380,157 (+)Ensembl
RefSeq Acc Id: NM_001106064   ⟹   NP_001099534
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,367,455 - 17,380,507 (+)NCBI
Rnor_6.01619,068,783 - 19,081,837 (+)NCBI
Rnor_5.01618,931,534 - 18,944,588 (+)NCBI
RGSC_v3.41617,785,631 - 17,798,683 (+)RGD
Celera1617,587,224 - 17,600,285 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252796   ⟹   XP_006252858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,367,480 - 17,379,983 (+)NCBI
Rnor_6.01619,068,850 - 19,081,344 (+)NCBI
Rnor_5.01618,931,534 - 18,944,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252797   ⟹   XP_006252859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,367,522 - 17,379,983 (+)NCBI
Rnor_6.01619,068,850 - 19,081,344 (+)NCBI
Rnor_5.01618,931,534 - 18,944,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094273   ⟹   XP_038950201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,367,522 - 17,379,983 (+)NCBI
RefSeq Acc Id: XM_039094274   ⟹   XP_038950202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,367,522 - 17,379,983 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001099534   ⟸   NM_001106064
- UniProtKB: A6K9P2 (UniProtKB/TrEMBL),   A0A8I5ZN65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252858   ⟸   XM_006252796
- Peptide Label: isoform X1
- UniProtKB: D3ZAX5 (UniProtKB/TrEMBL),   A0A8I5ZN65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252859   ⟸   XM_006252797
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZN65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017424   ⟸   ENSRNOT00000017424
RefSeq Acc Id: XP_038950201   ⟸   XM_039094273
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZN65 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950202   ⟸   XM_039094274
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZN65 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079307   ⟸   ENSRNOT00000114844
RefSeq Acc Id: ENSRNOP00000087633   ⟸   ENSRNOT00000110673
Protein Domains
CID   G-patch   SURP motif

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAX5-F1-model_v2 AlphaFold D3ZAX5 1-935 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699982
Promoter ID:EPDNEW_R10504
Type:initiation region
Name:Cherp_1
Description:calcium homeostasis endoplasmic reticulum protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,068,874 - 19,068,934EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305279 AgrOrtholog
BioCyc Gene G2FUF-11885 BioCyc
Ensembl Genes ENSRNOG00000012323 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017424 ENTREZGENE
  ENSRNOT00000017424.6 UniProtKB/TrEMBL
  ENSRNOT00000110673 ENTREZGENE
  ENSRNOT00000110673.1 UniProtKB/TrEMBL
  ENSRNOT00000114844 ENTREZGENE
  ENSRNOT00000114844.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.790 UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/TrEMBL
InterPro CHERP UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
  G_patch UniProtKB/TrEMBL
  RNA_polymerase_II_lsu_CTD UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/TrEMBL
KEGG Report rno:290614 UniProtKB/TrEMBL
NCBI Gene 290614 ENTREZGENE
PANTHER CALCIUM HOMEOSTASIS ENDOPLASMIC RETICULUM PROTEIN UniProtKB/TrEMBL
  PTHR12323 UniProtKB/TrEMBL
Pfam DUF618 UniProtKB/TrEMBL
  G-patch UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
PhenoGen Cherp PhenoGen
PROSITE CID UniProtKB/TrEMBL
  G_PATCH UniProtKB/TrEMBL
  SURP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012323 RatGTEx
SMART G_patch UniProtKB/TrEMBL
  SWAP UniProtKB/TrEMBL
Superfamily-SCOP ENTH_VHS UniProtKB/TrEMBL
  SSF109905 UniProtKB/TrEMBL
UniProt A0A8I5ZN65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A953_RAT UniProtKB/TrEMBL
  A6K9P2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAX5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cherp  calcium homeostasis endoplasmic reticulum protein   Cherp_predicted  calcium homeostasis endoplasmic reticulum protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cherp_predicted  calcium homeostasis endoplasmic reticulum protein (predicted)      Symbol and Name status set to approved 70820 APPROVED