Afg3l2 (AFG3 like matrix AAA peptidase subunit 2) - Rat Genome Database

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Gene: Afg3l2 (AFG3 like matrix AAA peptidase subunit 2) Rattus norvegicus
Analyze
Symbol: Afg3l2
Name: AFG3 like matrix AAA peptidase subunit 2
RGD ID: 1305259
Description: Predicted to enable ATP hydrolysis activity and metalloendopeptidase activity. Predicted to be involved in several processes, including cellular response to glutathione; mitochondrial protein quality control; and protein processing. Predicted to act upstream of or within several processes, including mitochondrion organization; nervous system development; and righting reflex. Predicted to be located in mitochondrial inner membrane. Predicted to be part of m-AAA complex. Human ortholog(s) of this gene implicated in optic atrophy 12; spastic ataxia; spastic ataxia 5; and spinocerebellar ataxia type 28. Orthologous to human AFG3L2 (AFG3 like matrix AAA peptidase subunit 2); INTERACTS WITH 2,6-dinitrotoluene; 3-chloropropane-1,2-diol; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AFG3 ATPase family gene 3-like 2; AFG3 ATPase family gene 3-like 2 (S. cerevisiae); AFG3 ATPase family member 3-like 2; AFG3 ATPase family member 3-like 2 (S. cerevisiae); AFG3(ATPase family gene 3)-like 2; AFG3(ATPase family gene 3)-like 2 (yeast); AFG3-like AAA ATPase 2; AFG3-like protein 2; LOC307350; MGC109579
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81863,224,163 - 63,269,000 (-)NCBIGRCr8
mRatBN7.21860,954,268 - 60,999,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1860,954,268 - 60,999,110 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1863,024,645 - 63,069,520 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01863,723,408 - 63,768,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01861,575,667 - 61,620,477 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01863,141,418 - 63,185,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1863,141,418 - 63,185,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01862,325,697 - 62,369,789 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41863,930,652 - 63,976,211 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11864,004,342 - 64,049,237 (-)NCBI
Celera1859,060,862 - 59,105,674 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. StAR enhances transcription of genes encoding the mitochondrial proteases involved in its own degradation. Bahat A, etal., Mol Endocrinol. 2014 Feb;28(2):208-24. doi: 10.1210/me.2013-1275. Epub 2013 Jan 1.
2. Missense mutations in the AFG3L2 proteolytic domain account for approximately 1.5% of European autosomal dominant cerebellar ataxias. Cagnoli C, etal., Hum Mutat. 2010 Oct;31(10):1117-24. doi: 10.1002/humu.21342.
3. Mutations in the mitochondrial protease gene AFG3L2 cause dominant hereditary ataxia SCA28. Di Bella D, etal., Nat Genet. 2010 Apr;42(4):313-21. doi: 10.1038/ng.544. Epub 2010 Mar 7.
4. Early onset and slow progression of SCA28, a rare dominant ataxia in a large four-generation family with a novel AFG3L2 mutation. Edener U, etal., Eur J Hum Genet. 2010 Aug;18(8):965-8. doi: 10.1038/ejhg.2010.40. Epub 2010 Mar 31.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Purkinje neuron Ca2+ influx reduction rescues ataxia in SCA28 model. Maltecca F, etal., J Clin Invest. 2015 Jan;125(1):263-74. doi: 10.1172/JCI74770. Epub 2014 Dec 8.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Whole-exome sequencing identifies homozygous AFG3L2 mutations in a spastic ataxia-neuropathy syndrome linked to mitochondrial m-AAA proteases. Pierson TM, etal., PLoS Genet. 2011 Oct;7(10):e1002325. doi: 10.1371/journal.pgen.1002325. Epub 2011 Oct 13.
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Comprehensive gene review and curation RGD comprehensive gene curation
15. Partial deletion of AFG3L2 causing spinocerebellar ataxia type 28. Smets K, etal., Neurology. 2014 Jun 10;82(23):2092-100. doi: 10.1212/WNL.0000000000000491. Epub 2014 May 9.
16. SCA28: Novel Mutation in the AFG3L2 Proteolytic Domain Causes a Mild Cerebellar Syndrome with Selective Type-1 Muscle Fiber Atrophy. Svenstrup K, etal., Cerebellum. 2016 Feb 11.
Additional References at PubMed
PMID:2917690   PMID:12477932   PMID:12865426   PMID:18614015   PMID:19656850   PMID:20038678   PMID:22354088   PMID:27642048   PMID:36786711  


Genomics

Comparative Map Data
Afg3l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81863,224,163 - 63,269,000 (-)NCBIGRCr8
mRatBN7.21860,954,268 - 60,999,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1860,954,268 - 60,999,110 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1863,024,645 - 63,069,520 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01863,723,408 - 63,768,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01861,575,667 - 61,620,477 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01863,141,418 - 63,185,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1863,141,418 - 63,185,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01862,325,697 - 62,369,789 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41863,930,652 - 63,976,211 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11864,004,342 - 64,049,237 (-)NCBI
Celera1859,060,862 - 59,105,674 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
AFG3L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381812,328,944 - 12,377,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1812,328,944 - 12,377,227 (-)EnsemblGRCh38hg38GRCh38
GRCh371812,328,943 - 12,377,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361812,319,108 - 12,367,194 (-)NCBINCBI36Build 36hg18NCBI36
Build 341812,319,107 - 12,367,194NCBI
Celera1812,209,592 - 12,258,040 (-)NCBICelera
Cytogenetic Map18p11.21NCBI
HuRef1812,282,720 - 12,330,985 (-)NCBIHuRef
CHM1_11812,328,344 - 12,376,662 (-)NCBICHM1_1
T2T-CHM13v2.01812,491,960 - 12,540,204 (-)NCBIT2T-CHM13v2.0
Afg3l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391867,537,830 - 67,582,277 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1867,537,834 - 67,582,242 (-)EnsemblGRCm39 Ensembl
GRCm381867,404,764 - 67,449,192 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1867,404,764 - 67,449,172 (-)EnsemblGRCm38mm10GRCm38
MGSCv371867,564,418 - 67,608,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361867,530,647 - 67,573,748 (-)NCBIMGSCv36mm8
MGSCv361867,744,570 - 67,787,917 (-)NCBIMGSCv36mm8
Celera1868,681,846 - 68,732,097 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1839.96NCBI
Afg3l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554021,037,402 - 1,069,165 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554021,037,414 - 1,069,165 (+)NCBIChiLan1.0ChiLan1.0
AFG3L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21725,668,723 - 25,717,054 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11811,361,288 - 11,409,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0181,951,279 - 1,999,313 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11817,062,250 - 17,109,400 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1817,062,250 - 17,109,400 (+)Ensemblpanpan1.1panPan2
AFG3L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1777,749,029 - 77,787,466 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl777,737,808 - 77,787,472 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha777,150,018 - 77,188,528 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0777,807,611 - 77,846,122 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl777,807,620 - 77,846,169 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1777,504,323 - 77,543,062 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0777,551,535 - 77,590,352 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0777,837,991 - 77,876,512 (-)NCBIUU_Cfam_GSD_1.0
Afg3l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404944922,646 - 961,521 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936626150,974 - 189,218 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936626150,953 - 189,980 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFG3L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl697,200,922 - 97,235,366 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1697,200,890 - 97,234,577 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2690,816,080 - 90,833,767 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AFG3L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11870,890,939 - 70,939,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1870,891,554 - 70,939,352 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605045,917,807 - 45,966,505 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Afg3l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477019,591,215 - 19,631,722 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477019,590,829 - 19,631,663 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Afg3l2
206 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:65
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000024632
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)185880568763636873Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185971241776477814Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647871893566Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
2312600Bp341Blood pressure QTL 3410.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185933040970263868Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186062231177209844Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647883828827Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186062231177209844Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 40 11 8
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000024632   ⟹   ENSRNOP00000024632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1860,954,268 - 60,999,110 (-)Ensembl
Rnor_6.0 Ensembl1863,141,418 - 63,185,510 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102128   ⟹   ENSRNOP00000078320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1860,954,268 - 60,995,289 (-)Ensembl
RefSeq Acc Id: NM_001134864   ⟹   NP_001128336
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,224,163 - 63,269,000 (-)NCBI
mRatBN7.21860,954,268 - 60,999,110 (-)NCBI
Rnor_6.01863,141,418 - 63,185,510 (-)NCBI
Rnor_5.01862,325,697 - 62,369,789 (-)NCBI
RGSC_v3.41863,930,652 - 63,976,211 (-)RGD
Celera1859,060,862 - 59,105,674 (-)RGD
Sequence:
RefSeq Acc Id: XM_039096796   ⟹   XP_038952724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,224,169 - 63,264,407 (-)NCBI
mRatBN7.21860,954,274 - 60,994,515 (-)NCBI
RefSeq Acc Id: XM_039096797   ⟹   XP_038952725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,224,169 - 63,252,646 (-)NCBI
mRatBN7.21860,954,274 - 60,982,739 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001128336 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952724 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952725 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91419 (Get FASTA)   NCBI Sequence Viewer  
  EDM14729 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024632
  ENSRNOP00000024632.4
  ENSRNOP00000078320.1
RefSeq Acc Id: NP_001128336   ⟸   NM_001134864
- UniProtKB: F1LN92 (UniProtKB/TrEMBL),   A0A8I5ZLF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024632   ⟸   ENSRNOT00000024632
RefSeq Acc Id: XP_038952724   ⟸   XM_039096796
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZLF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952725   ⟸   XM_039096797
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000078320   ⟸   ENSRNOT00000102128
Protein Domains
AAA+ ATPase   Peptidase M41

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LN92-F1-model_v2 AlphaFold F1LN92 1-802 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700843
Promoter ID:EPDNEW_R11367
Type:initiation region
Name:Afg3l2_1
Description:AFG3 like matrix AAA peptidase subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01863,185,489 - 63,185,549EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305259 AgrOrtholog
BioCyc Gene G2FUF-7143 BioCyc
Ensembl Genes ENSRNOG00000017965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024632 ENTREZGENE
  ENSRNOT00000024632.6 UniProtKB/TrEMBL
  ENSRNOT00000102128.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.58.760 UniProtKB/TrEMBL
  3.40.1690.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  FtsH UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Pept_M41_FtsH_extracell UniProtKB/TrEMBL
  Peptidase_M41 UniProtKB/TrEMBL
  Peptidase_M41-like UniProtKB/TrEMBL
KEGG Report rno:307350 UniProtKB/TrEMBL
NCBI Gene 307350 ENTREZGENE
PANTHER AFG3-LIKE PROTEIN 2 UniProtKB/TrEMBL
  ATP-DEPENDENT PROTEASE UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  FtsH_ext UniProtKB/TrEMBL
  Peptidase_M41 UniProtKB/TrEMBL
PhenoGen Afg3l2 PhenoGen
PROSITE AAA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017965 RatGTEx
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF140990 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZLF3 ENTREZGENE, UniProtKB/TrEMBL
  A6IXU8_RAT UniProtKB/TrEMBL
  F1LN92 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJM6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Afg3l2  AFG3 like matrix AAA peptidase subunit 2  Afg3l2  AFG3-like AAA ATPase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-11 Afg3l2  AFG3-like AAA ATPase 2  Afg3l2  AFG3 ATPase family member 3-like 2 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-11-21 Afg3l2  AFG3 ATPase family member 3-like 2 (S. cerevisiae)  Afg3l2  AFG3 ATPase family gene 3-like 2 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Afg3l2  AFG3 ATPase family gene 3-like 2 (S. cerevisiae)  Afg3l2  AFG3(ATPase family gene 3)-like 2 (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Afg3l2  AFG3(ATPase family gene 3)-like 2 (yeast)  Afg3l2_predicted  AFG3(ATPase family gene 3)-like 2 (yeast) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Afg3l2_predicted  AFG3(ATPase family gene 3)-like 2 (yeast) (predicted)      Symbol and Name status set to approved 70820 APPROVED