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Gene: Sanbr (SANT and BTB domain regulator of CSR) Rattus norvegicus

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Symbol:

Sanbr

Name:

SANT and BTB domain regulator of CSR

RGD ID:

1305110

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in isotype switching. Orthologous to human SANBR (SANT and BTB domain regulator of CSR); INTERACTS WITH aflatoxin B1; bisphenol A; manganese(II) chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC305579; LOC305579; RGD1305110; SANT and BTB domain regulator of class switch recombination; similar to KIAA1841 protein; uncharacterized protein KIAA1841 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SANBR (SANT and BTB domain regulator of CSR)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Sanbr (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sanbr (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SANBR (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SANBR (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sanbr (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SANBR (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SANBR (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sanbr (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sanbr (SANT and BTB domain regulator of CSR)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	C1orf21 (chromosome 1 open reading frame 21)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Sanbr (SANT and BTB domain regulator of CSR)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SANBR (SANT and BTB domain regulator of CSR)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-189k9.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6761	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6761	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sanbr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	101,717,619 - 101,787,092 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	101,716,868 - 101,782,480 (-)	Ensembl				GRCr8
mRatBN7.2	14	97,516,652 - 97,585,955 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	97,516,413 - 97,581,346 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	101,848,795 - 101,917,792 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	103,093,152 - 103,162,145 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	99,564,718 - 99,633,716 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	108,305,343 - 108,376,618 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	108,305,418 - 108,372,157 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	105,141,200 - 105,211,616 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	104,466,526 - 104,536,016 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	96,493,622 - 96,561,785 (-)	NCBI		Celera
RGSC_v3.1	14	104,495,362 - 104,555,339 (-)	NCBI
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17beta-estradiol (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cisplatin (ISO)

fulvestrant (ISO)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (EXP,ISO)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

zalcitabine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

isotype switching (IBA,IEA,ISO,ISS)

Molecular Function

identical protein binding (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Sanbr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	101,717,619 - 101,787,092 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	101,716,868 - 101,782,480 (-)	Ensembl				GRCr8
mRatBN7.2	14	97,516,652 - 97,585,955 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	97,516,413 - 97,581,346 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	101,848,795 - 101,917,792 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	103,093,152 - 103,162,145 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	99,564,718 - 99,633,716 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	108,305,343 - 108,376,618 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	108,305,418 - 108,372,157 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	105,141,200 - 105,211,616 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	104,466,526 - 104,536,016 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	96,493,622 - 96,561,785 (-)	NCBI		Celera
RGSC_v3.1	14	104,495,362 - 104,555,339 (-)	NCBI
Cytogenetic Map	14	q22	NCBI

SANBR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	61,065,871 - 61,138,032 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	61,065,871 - 61,138,034 (+)	Ensembl			hg38	GRCh38
GRCh37	2	61,293,006 - 61,365,167 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	61,146,867 - 61,218,673 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	61,136,600 - 61,208,762 (+)	NCBI		Celera
Cytogenetic Map	2	p15	NCBI
HuRef	2	61,033,863 - 61,106,176 (+)	NCBI		HuRef
CHM1_1	2	61,223,592 - 61,295,700 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	61,071,714 - 61,143,876 (+)	NCBI		T2T-CHM13v2.0

Sanbr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	23,514,949 - 23,596,409 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	23,514,961 - 23,583,631 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	23,564,949 - 23,633,681 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	23,564,961 - 23,633,639 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	23,473,776 - 23,533,631 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	23,473,781 - 23,533,621 (-)	NCBI		MGSCv36	mm8
Celera	11	25,695,626 - 25,755,514 (-)	NCBI		Celera
Cytogenetic Map	11	A3.2	NCBI
cM Map	11	14.33	NCBI

Sanbr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	22,728,802 - 22,785,374 (-)	Ensembl
ChiLan1.0	NW_004955424	22,728,802 - 22,785,374 (-)	NCBI	ChiLan1.0	ChiLan1.0

SANBR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	65,237,578 - 65,311,361 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	65,241,518 - 65,315,312 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	61,157,551 - 61,229,955 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	62,298,792 - 62,369,817 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	62,299,121 - 62,369,817 (+)	Ensembl			panPan2	panpan1.1

SANBR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	61,143,971 - 61,195,058 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	61,123,655 - 61,193,241 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	61,030,572 - 61,084,924 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	62,149,335 - 62,203,748 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	62,149,396 - 62,203,592 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	61,852,129 - 61,906,665 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	62,136,889 - 62,190,918 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	62,432,281 - 62,486,639 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sanbr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	21,940,781 - 21,992,755 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	6,578,484 - 6,630,513 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	6,578,538 - 6,629,610 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SANBR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	80,675,008 - 80,746,252 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	80,675,008 - 80,746,306 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	84,698,819 - 84,727,009 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SANBR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	45,865,697 - 45,920,403 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	45,864,838 - 45,920,782 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	65,876,997 - 65,935,631 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sanbr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624833	771,627 - 825,815 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624833	772,761 - 828,302 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sanbr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	93,333,621 - 93,382,751 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sanbr
564 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	28
Count of miRNA genes:	26
Interacting mature miRNAs:	28
Transcripts:	ENSRNOT00000007385
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	62398852	107398852	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	59848686	104848686	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	60854936	105854936	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	77914838	104348525	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	59848686	104848686	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat

Markers in Region

BE098780

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	97,543,052 - 97,543,236 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,334,031 - 108,334,214	NCBI	Rnor6.0
Rnor_5.0	14	105,168,971 - 105,169,154	UniSTS	Rnor5.0
RGSC_v3.4	14	104,493,084 - 104,493,267	UniSTS	RGSC3.4
Celera	14	96,519,987 - 96,520,170	UniSTS
RH 3.4 Map	14	780.69	UniSTS
Cytogenetic Map	14	q22	UniSTS

GDB:437189

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	97,517,490 - 97,517,920 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,306,182 - 108,306,611	NCBI	Rnor6.0
Rnor_5.0	14	105,142,039 - 105,142,468	UniSTS	Rnor5.0
RGSC_v3.4	14	104,467,365 - 104,467,794	UniSTS	RGSC3.4
Celera	14	96,494,461 - 96,494,890	UniSTS
Cytogenetic Map	14	p22	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC128776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085886 ⟹ ENSRNOP00000074352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	101,716,868 - 101,782,480 (-)	Ensembl
mRatBN7.2 Ensembl	14	97,516,413 - 97,581,346 (-)	Ensembl
Rnor_6.0 Ensembl	14	108,326,625 - 108,372,157 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088116 ⟹ ENSRNOP00000071734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	101,733,823 - 101,782,480 (-)	Ensembl
mRatBN7.2 Ensembl	14	97,532,681 - 97,581,346 (-)	Ensembl
Rnor_6.0 Ensembl	14	108,305,418 - 108,372,068 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091143 ⟹ ENSRNOP00000075048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	101,733,823 - 101,782,480 (-)	Ensembl
mRatBN7.2 Ensembl	14	97,532,681 - 97,581,346 (-)	Ensembl
Rnor_6.0 Ensembl	14	108,322,832 - 108,372,075 (-)	Ensembl

RefSeq Acc Id:

NM_001100971 ⟹ NP_001094441

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,717,794 - 101,786,940 (-)	NCBI
mRatBN7.2	14	97,516,652 - 97,585,806 (-)	NCBI
Rnor_6.0	14	108,305,343 - 108,376,566 (-)	NCBI
Rnor_5.0	14	105,141,200 - 105,211,616 (-)	NCBI
RGSC_v3.4	14	104,466,526 - 104,536,016 (-)	RGD
Celera	14	96,493,622 - 96,561,785 (-)	RGD

Sequence:

show sequence

GGTGAGGGCCGCCGCGGCCCTGTGGAGATGAGGAAACGGAGACACGGATTATCTGAACTAGAGA
ATATCTTACTGGTAGAACCAAGATATAAAGTTGGACAGTTTGACTCCAGAATCTATTCTTGTAA
CTACTACACTGTGCTGGTCCTTCAGTAAGCTCTAGAAGATGAGTCGTGGGTGTCCAGAAAACAA
TAATTTCCTGACTAATAATAACCAAATGGTATTGGATATGATCCTTTATCCATTGATTGGAATC
CCTCAGACCATCAACTGGGAAACTGTGGCAAGGCTTGTGCCTGGATTAACACCCAAAGAGTGTG
TGAAAAGATTTGATGAGCTGAAGAGCTGTGGAAGTTCACCTGTTGACAACCAGTATAACCCTTT
AATGGCTGCCGGAGAGGGTCCTGTTGAAACTTTAGCCACTTATATTAAATCTTCACTTTTGGAT
GCACAAGGAGATTTCCAAGAGACTCCAGTTGATCAAGATACAGTTTCTAAAGCAGGAAGACATA
GTATAGCTACCACAAGGAATTGCTCTTCAGAAAGTGAGAACTGTACTGCTCGTAATGCTGGAGA
AGAGACTGGAGACTCTGAAGGGCCAAACATGGTGATCCATGTATGTGATGAAGCAAAAAGCTTG
AAAGAAGATTTTATTTGCCCACGAGATCTTTTGATATCAGAAATGAAGTACTTTGCTGAGTATT
TATCTGTGGACGCCCAGCGCTGGGAAGAGGTGGACATTTCAGTTCATTGCGATGTTCACATTTT
CAACTGGCTGATAAAATATGTTAAAAGAAACACTAAGGACAGTAAAGACTGTGAGCTTCCTGCT
CTAGAGCCAGGAAATGTCATTTCAATCCTTATTTCTTCAGAGTTCTTGAAGATGGATTCATTAG
TTGAACAATGTATTCAGTATTGCCATAAAAATATGAATGCCATAGTAGCTGCCCCATGCAACAT
GAACTGTATCAATGTCAACCTCCTTACACGCATAGCTGACCTGTTCACACACAACGAGATTGAT
GACTTAAAAGACAAAAAAGATAAGTTTAGGAGCAAACTGTTTTGTAAGAAGATTGAAAGACTGT
TTGATCCTGAATACTTCAATCCAGATTCTCGAAATAATGCAGCAACACTCTATCGATGCTGTTT
GTGTAAGAAACTTTTAACTAGAGAAACAGAAAGAAGAATTTCTTGCATCCCTGGAAAAATCAAT
GTGGATCGACATGGAAATATTATCTACATCCACATAAGAGATAAAACCTGGGATGTCCATGAAT
ATTTGAATAGTCTTTTTGAAGAATTAAAATCTTGGAGAGATGTTTATTGGCGTCTGTGGGGAAC
AATCAACTGGCTGACTTGTTCAAGGTGTTACCAGGCTTTCCTCTGCATTGAATTCTCCCACTGT
CAGTACCACTCAGAGGTGGTCGTTTACTCCAGCGCAGTGAACTCACTGAACACTGTGGGCACTG
GAATTTACCCCTGCTGTAACCAGAAAGTTCTTCGATTTGATCCCACTCAGCTCACAAAGGGCTG
TAAAGTGAGGGACCACATGGTTCTTCTTCATGACCAAGGGGAAAATGATGATTCACTTTCTTGT
CCAACTGCTAAAATACTGGATGATCTGCATAAGCACAAAGATGTCATTGCTGTACCGTTTTTAA
AAGATCCAGTTAGTGATCCTGGGGTTGGCTCCTGTGATGAGAAGGGCCTGGAATATGAGATTTT
ACTGGAGCCAAATACACCGTGGGGCTCCAAAACTGGGGAGCTCAATGCTTTTTTGTCACTGAAA
AACTGGACTCTGCAGTTGAAACAGCAGTCGTTGTTCTCAGAGGAGGAAGAGTACACCACCGGGT
CTGAGGTCACTGAAGATGAAGTCGGTGATGAAGAAGAAATTTCCAAGAAACAAAGGAAAAAGGA
GAAGCCAAAGAAATTTACTAAGCCACCAAAAAAGCAACTGTCCTCACCCTGTTCTCAAAAGAAA
GAGAAGACACTGGAGAAGTCAACTTCTAGAGATGTATCTCCTTTTGTTGTGAGCATGCAGAAGA
ACAAGTGGGACGCCACAAGATCCTTGAGATTCAACCAGGATGCACAGAGAGAGGACGATCAGCG
GCGGATGTCTGAAATTACAGGGCATCTAATAAAAATGAGACTGGGTGATCTGGACCGAGTCAAG
GCAAAGGAATCAAAAGAATTTGCAGGAGGCATTTATTCTAGGCTTGAAGCCCAAGTCAAAGCCT
CAGTGCCTGTCACTGCCCGGCAAAACAGCTCAGACAAAAACCAGAGCAATATCCCACAAAGACA
CTTATTCAACTATGTTCATAGCAACTTTATTCGTAATAGCCAGAAACTGGAAACAAGTCAGATG
TTCATCAACTGAAGAATGGATAAAGAAAATGTGGTACATCTACACAATGGACTACTAGTCAGCC
ATTAAAAACAGAGACTGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001414964 ⟹ NP_001401893

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,809 - 101,787,052 (-)	NCBI
mRatBN7.2	14	97,532,667 - 97,585,918 (-)	NCBI

RefSeq Acc Id:

XM_017599249 ⟹ XP_017454738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,816 - 101,787,092 (-)	NCBI
mRatBN7.2	14	97,532,669 - 97,585,954 (-)	NCBI
Rnor_6.0	14	108,321,360 - 108,376,618 (-)	NCBI

Sequence:

show sequence

CGTTCTGGGCGCGAGCGCGGGCGGTGCCGGCCGCTGCAGGTGACACCGGTGCGGTGAGGGCCGC
CGCGGCCCTGTGGAGATGAGGAAACGGAGACACGGATTATCTGAACTAGAGAATATCTTACTGG
TAGAACCAAGATATAAAGTTGGACAGTTTGACTCCAGAATCTATTCTTGTAACTACTACACTGT
GCTGGTCCTTCAGTAAGCTCTAGAAGATGAGTCGTGGGTGTCCAGAAAACAATAATTTCCTGAC
TAATAATAACCAAATGGTATTGGATATGATCCTTTATCCATTGATTGGAATCCCTCAGACCATC
AACTGGGAAACTGTGGCAAGGCTTGTGCCTGGATTAACACCCAAAGAGTGTGTGAAAAGATTTG
ATGAGCTGAAGAGCTGTGGAAGTTCACCTGTTGACAACCAGTATAACCCTTTAATGGCTGCCGG
AGAGGGTCCTGTTGAAACTTTAGCCACTTATATTAAATCTTCACTTTTGGATGCACAAGGAGAT
TTCCAAGAGACTCCAGTTGATCAAGATACAGTTTCTAAAGCAGGAAGACATAGTATAGCTACCA
CAAGGAATTGCTCTTCAGAAAGTGAGAACTGTACTGCTCGTAATGCTGGAGAAGAGACTGGAGA
CTCTGAAGGGCCAAACATGGTGATCCATGTATGTGATGAAGCAAAAAGCTTGAAAGAAGATTTT
ATTTGCCCACGAGATCTTTTGATATCAGAAATGAAGTACTTTGCTGAGTATTTATCTGTGGACG
CCCAGCGCTGGGAAGAGGTGGACATTTCAGTTCATTGCGATGTTCACATTTTCAACTGGCTGAT
AAAATATGTTAAAAGAAACACTAAGGACAGTAAAGACTGTGAGCTTCCTGCTCTAGAGCCAGGA
AATGTCATTTCAATCCTTATTTCTTCAGAGTTCTTGAAGATGGATTCATTAGTTGAACAATGTA
TTCAGTATTGCCATAAAAATATGAATGCCATAGTAGCTGCCCCATGCAACATGAACTGTATCAA
TGTCAACCTCCTTACACGCATAGCTGACCTGTTCACACACAACGAGATTGATGACTTAAAAGAC
AAAAAAGATAAGTTTAGGAGCAAACTGTTTTGTAAGAAGATTGAAAGACTGTTTGATCCTGAAT
ACTTCAATCCAGATTCTCGAAATAATGCAGCAACACTCTATCGATGCTGTTTGTGTAAGAAACT
TTTAACTAGAGAAACAGAAAGAAGAATTTCTTGCATCCCTGGAAAAATCAATGTGGATCGACAT
GGAAATATTATCTACATCCACATAAGAGATAAAACCTGGGATGTCCATGAATATTTGAATAGTC
TTTTTGAAGAATTAAAATCTTGGAGAGATGTTTATTGGCGTCTGTGGGGAACAATCAACTGGCT
GACTTGTTCAAGGTGTTACCAGGCTTTCCTCTGCATTGAATTCTCCCACTGTCAGTACCACTCA
GAGGTGGTCGTTTACTCCAGCGCAGTGAACTCACTGAACACTGTGGGCACTGGAATTTACCCCT
GCTGTAACCAGAAAGTTCTTCGATTTGATCCCACTCAGCTCACAAAGGGCTGTAAAGTGAGGGA
CCACATGGTTCTTCTTCATGACCAAGGGGAAAATGATGATTCACTTTCTTGTCCAACTGCTAAA
ATACTGGATGATCTGCATAAGCACAAAGATGTCATTGCTGTACCGTTTTTAAAAGATCCAGTTA
GTGATCCTGGGGTTGGCTCCTGTGATGAGAAGGGCCTGGAATATGAGATTTTACTGGAGCCAAA
TACACCGTGGGGCTCCAAAACTGGGGAGCTCAATGCTTTTTTGTCACTGAAAAACTGGACTCTG
CAGTTGAAACAGCAGTCGTTGTTCTCAGAGGAGGAAGAGTACACCACCGGGTCTGAGGTCACTG
AAGATGAAGTCGGTGATGAAGAAGAAATTTCCAAGAAACAAAGGAAAAAGGAGAAGCCAAAGAA
ATTTACTAAGCCACCAAAAAAGCAACTGTCCTCACCCTGTTCTCAAAAGAAAGAGAAGACACTG
GAGAAGTCAACTTCTAGAGATGTATCTCCTTTTGTTGTGAGCATGCAGAAGAACAAGTGGGACG
CCACAAGATCCTTGAGATTCAACCAGGATGCACAGAGAGAGGACGATCAGCGGCGGATGTCTGA
AATTACAGGGCATCTAATAAAAATGAGACTGGGTGATCTGGACCGAGTCAAGGCAAAGGAATCA
AAAGAATTTGCAGGAGGCATTTATTCTAGGCTTGAAGCCCAAGTCAAAGCCTCAGTGCCTGTCA
CTGCCCGGCAAAACAGCTCAGACAAAAACCAGAGGGGTTTTAGAAGACTTGTGGCGAGCAGCAC
AAAGTTTCACAGGATGTTGATGTTGTCAGACAGACAGACGAAGGCAGCAACGGCATCCTGCTGT
TCTAGAAGCCCGAAGTCTAGAAGTCTGACTTTGTTTTCTGTTTAAAAAACCTAGGTCTAAAAGT
CGTTTTGGTCAAGGGCGTCCTGCATAAAGACCCTAGATATAAAAAGAGCGAAGGCACACTCTGG
ACATCTGAAATGTTCACTCCTCGAAGATCTTCAGTGACTGCTAGGTGCTCTATGAGTTATCCCT
GCAGACCACACAAATCATGCTACGGTGACTGCTAGGTATTCCATTAGTTATCCCTGCAAACCAC
AAAAATCATGCTTACACAAATATATAGTTAGGTTTCGTTAAAATCTTAACTGTATATATAAATT
TTCCTATATAAATTTCTCTTTGTATAATTCTAGGCTGTGTAGAAAATAATTGCATACATAGTTA
ATATTCTCAATATCTGTTGCCCTTTATTTATTTGACAAAGAAGAGTCCTAAGTTGGTAAGACCC
TAAGAAATTAAGGGCACAGGCCTGGGAGTGTCACTGTGCAGTACACTGACCGCTGTATGTTTGG
GGAGTGTGGAGTCTTAGGCATAGCGTTGGGAAATGAATTTGTGTAATGAGCTGTCGGTGATGTT
AAATTTAGCTGTGTGGATATTAGGGAGTGACAGATCCCGATGCGGTGTTAGTAGAGTTTCAAGT
GAGGGCATCGCAGTACTATGTTGGTCAAGAAGGGTTCATCTTTCAGGATTATTATATGGAAAGT
TCAATGTTAGTTCACCTTCTGTTTCTTTCAATTTTTCATAGTTATCTGTAAATCATAGGAGCCT
AAAATGAGGTCCTTGCCCTTCTCCTCTGTGAAGCTAGTGACACTGGCCCACCGAAGGCAGCGTG
AGCTGGCCTGGGGTGCTGGGTCACTTCAGCTCTGTGGCACAGGCAGACGCAGGCTTCTCACACC
CACTCATCCTCTGAGTCTCCTTCAACCCCCTCACAGCAAGGGACTGCTAGTCACTTAGAGACGG
CTTCAAACTTCCCAGATAAAGGAGACGTTCAAATAAAACTAGTTTACAGATCATGTTTTTAATT
TTTTCTAACCAGGTAGACAGCACACTCAGGGAAATTTTGTTCCAGACTGTAAGCATGTACTGTT
ACATGTTTGGAAATTGTTTATGGGTCTCTGAGAACCATGAGATGTACACCGTTTCTATGTTTAG
TTTTCCTTTGCCTTGTGACTCACATCTTTGGATTATTCAGAGAATAAATCTTGTAAAAGATTTA
CACCTAGTTCACACAAAAAAATTATAATTGTTAGTATCTTTTAGTTGCTATATGAAGCTCCTAA
TTATTTGTTATTTATGTTTTTAATATCTATTTGGAAATTTTATTCTGGTATACAGATGCTTTTT
AGTTATCTGATACTTCAGAAATAGCTTTTATCATATTTATTTTCAAGAAAGTGTTCTTTGAATG
CGATGTGTAAGTCCCATGAGTTACCAGTCTTACTGTTGGCTCCTGGATTCTCTGAAAGAAAGAT
TTGGATTTATGTATGTAAGCAGCTTGTGATCATTGTAATTAGAAGGAAATATGCTCTTTTGATT
TTCACAAATGATGAAAGTGCTCATTGCTTCTCTGCAGAGGGGGCTGATTTACTGACTGATGTTA
ACAGACTTTGTTGAAATCTGATTTCATGTGGAATGTGCTTTTTATTTTGTGTCTGTCTGTGATA
CACGGACAGGCATTTCTTCTACCAAGTACTTTAAGGCTTTCCTTACATTAATTCTGAATTCAAA
CTTATTGAAATAAATGGCAATGACAAAAACTGTG

hide sequence

RefSeq Acc Id:

XM_017599251 ⟹ XP_017454740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,816 - 101,777,445 (-)	NCBI
mRatBN7.2	14	97,532,669 - 97,576,307 (-)	NCBI
Rnor_6.0	14	108,321,360 - 108,367,229 (-)	NCBI

Sequence:

show sequence

TAGCCACTTATATTAAATCTTCACTTTTGGATGCACAAGGAGATTTCCAAGAGACTCCAGTTGA
TCAAGATACAGTTTCTAAAGCAGGCCAAACATGGTGATCCATGTATGTGATGAAGCAAAAAGCT
TGAAAGAAGATTTTATTTGCCCACGAGATCTTTTGATATCAGAAATGAAGTACTTTGCTGAGTA
TTTATCTGTGGACGCCCAGCGCTGGGAAGAGGTGGACATTTCAGTTCATTGCGATGTTCACATT
TTCAACTGGCTGATAAAATATGTTAAAAGAAACACTAAGGACAGTAAAGACTGTGAGCTTCCTG
CTCTAGAGCCAGGAAATGTCATTTCAATCCTTATTTCTTCAGAGTTCTTGAAGATGGATTCATT
AGTTGAACAATGTATTCAGTATTGCCATAAAAATATGAATGCCATAGTAGCTGCCCCATGCAAC
ATGAACTGTATCAATGTCAACCTCCTTACACGCATAGCTGACCTGTTCACACACAACGAGATTG
ATGACTTAAAAGACAAAAAAGATAAGTTTAGGAGCAAACTGTTTTGTAAGAAGATTGAAAGACT
GTTTGATCCTGAATACTTCAATCCAGATTCTCGAAATAATGCAGCAACACTCTATCGATGCTGT
TTGTGTAAGAAACTTTTAACTAGAGAAACAGAAAGAAGAATTTCTTGCATCCCTGGAAAAATCA
ATGTGGATCGACATGGAAATATTATCTACATCCACATAAGAGATAAAACCTGGGATGTCCATGA
ATATTTGAATAGTCTTTTTGAAGAATTAAAATCTTGGAGAGATGTTTATTGGCGTCTGTGGGGA
ACAATCAACTGGCTGACTTGTTCAAGGTGTTACCAGGCTTTCCTCTGCATTGAATTCTCCCACT
GTCAGTACCACTCAGAGGTGGTCGTTTACTCCAGCGCAGTGAACTCACTGAACACTGTGGGCAC
TGGAATTTACCCCTGCTGTAACCAGAAAGTTCTTCGATTTGATCCCACTCAGCTCACAAAGGGC
TGTAAAGTGAGGGACCACATGGTTCTTCTTCATGACCAAGGGGAAAATGATGATTCACTTTCTT
GTCCAACTGCTAAAATACTGGATGATCTGCATAAGCACAAAGATGTCATTGCTGTACCGTTTTT
AAAAGATCCAGTTAGTGATCCTGGGGTTGGCTCCTGTGATGAGAAGGGCCTGGAATATGAGATT
TTACTGGAGCCAAATACACCGTGGGGCTCCAAAACTGGGGAGCTCAATGCTTTTTTGTCACTGA
AAAACTGGACTCTGCAGTTGAAACAGCAGTCGTTGTTCTCAGAGGAGGAAGAGTACACCACCGG
GTCTGAGGTCACTGAAGATGAAGTCGGTGATGAAGAAGAAATTTCCAAGAAACAAAGGAAAAAG
GAGAAGCCAAAGAAATTTACTAAGCCACCAAAAAAGCAACTGTCCTCACCCTGTTCTCAAAAGA
AAGAGAAGACACTGGAGAAGTCAACTTCTAGAGATGTATCTCCTTTTGTTGTGAGCATGCAGAA
GAACAAGTGGGACGCCACAAGATCCTTGAGATTCAACCAGGATGCACAGAGAGAGGACGATCAG
CGGCGGATGTCTGAAATTACAGGGCATCTAATAAAAATGAGACTGGGTGATCTGGACCGAGTCA
AGGCAAAGGAATCAAAAGAATTTGCAGGAGGCATTTATTCTAGGCTTGAAGCCCAAGTCAAAGC
CTCAGTGCCTGTCACTGCCCGGCAAAACAGCTCAGACAAAAACCAGAGGGGTTTTAGAAGACTT
GTGGCGAGCAGCACAAAGTTTCACAGGATGTTGATGTTGTCAGACAGACAGACGAAGGCAGCAA
CGGCATCCTGCTGTTCTAGAAGCCCGAAGTCTAGAAGTCTGACTTTGTTTTCTGTTTAAAAAAC
CTAGGTCTAAAAGTCGTTTTGGTCAAGGGCGTCCTGCATAAAGACCCTAGATATAAAAAGAGCG
AAGGCACACTCTGGACATCTGAAATGTTCACTCCTCGAAGATCTTCAGTGACTGCTAGGTGCTC
TATGAGTTATCCCTGCAGACCACACAAATCATGCTACGGTGACTGCTAGGTATTCCATTAGTTA
TCCCTGCAAACCACAAAAATCATGCTTACACAAATATATAGTTAGGTTTCGTTAAAATCTTAAC
TGTATATATAAATTTTCCTATATAAATTTCTCTTTGTATAATTCTAGGCTGTGTAGAAAATAAT
TGCATACATAGTTAATATTCTCAATATCTGTTGCCCTTTATTTATTTGACAAAGAAGAGTCCTA
AGTTGGTAAGACCCTAAGAAATTAAGGGCACAGGCCTGGGAGTGTCACTGTGCAGTACACTGAC
CGCTGTATGTTTGGGGAGTGTGGAGTCTTAGGCATAGCGTTGGGAAATGAATTTGTGTAATGAG
CTGTCGGTGATGTTAAATTTAGCTGTGTGGATATTAGGGAGTGACAGATCCCGATGCGGTGTTA
GTAGAGTTTCAAGTGAGGGCATCGCAGTACTATGTTGGTCAAGAAGGGTTCATCTTTCAGGATT
ATTATATGGAAAGTTCAATGTTAGTTCACCTTCTGTTTCTTTCAATTTTTCATAGTTATCTGTA
AATCATAGGAGCCTAAAATGAGGTCCTTGCCCTTCTCCTCTGTGAAGCTAGTGACACTGGCCCA
CCGAAGGCAGCGTGAGCTGGCCTGGGGTGCTGGGTCACTTCAGCTCTGTGGCACAGGCAGACGC
AGGCTTCTCACACCCACTCATCCTCTGAGTCTCCTTCAACCCCCTCACAGCAAGGGACTGCTAG
TCACTTAGAGACGGCTTCAAACTTCCCAGATAAAGGAGACGTTCAAATAAAACTAGTTTACAGA
TCATGTTTTTAATTTTTTCTAACCAGGTAGACAGCACACTCAGGGAAATTTTGTTCCAGACTGT
AAGCATGTACTGTTACATGTTTGGAAATTGTTTATGGGTCTCTGAGAACCATGAGATGTACACC
GTTTCTATGTTTAGTTTTCCTTTGCCTTGTGACTCACATCTTTGGATTATTCAGAGAATAAATC
TTGTAAAAGATTTACACCTAGTTCACACAAAAAAATTATAATTGTTAGTATCTTTTAGTTGCTA
TATGAAGCTCCTAATTATTTGTTATTTATGTTTTTAATATCTATTTGGAAATTTTATTCTGGTA
TACAGATGCTTTTTAGTTATCTGATACTTCAGAAATAGCTTTTATCATATTTATTTTCAAGAAA
GTGTTCTTTGAATGCGATGTGTAAGTCCCATGAGTTACCAGTCTTACTGTTGGCTCCTGGATTC
TCTGAAAGAAAGATTTGGATTTATGTATGTAAGCAGCTTGTGATCATTGTAATTAGAAGGAAAT
ATGCTCTTTTGATTTTCACAAATGATGAAAGTGCTCATTGCTTCTCTGCAGAGGGGGCTGATTT
ACTGACTGATGTTAACAGACTTTGTTGAAATCTGATTTCATGTGGAATGTGCTTTTTATTTTGT
GTCTGTCTGTGATACACGGACAGGCATTTCTTCTACCAAGTACTTTAAGGCTTTCCTTACATTA
ATTCTGAATTCAAACTTATTGAAATAAATGGCAATGACAAAAACTGTG

hide sequence

RefSeq Acc Id:

XM_039092091 ⟹ XP_038948019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,816 - 101,786,808 (-)	NCBI
mRatBN7.2	14	97,532,669 - 97,585,679 (-)	NCBI

RefSeq Acc Id:

XM_039092096 ⟹ XP_038948024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,816 - 101,787,092 (-)	NCBI
mRatBN7.2	14	97,532,669 - 97,585,955 (-)	NCBI

RefSeq Acc Id:

XM_039092097 ⟹ XP_038948025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,816 - 101,777,489 (-)	NCBI
mRatBN7.2	14	97,532,669 - 97,576,357 (-)	NCBI

RefSeq Acc Id:

XM_063273268 ⟹ XP_063129338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,733,816 - 101,786,806 (-)	NCBI

RefSeq Acc Id:

XM_063273269 ⟹ XP_063129339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,717,619 - 101,786,805 (-)	NCBI

RefSeq Acc Id:

XM_063273270 ⟹ XP_063129340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	101,717,619 - 101,787,092 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094441	(Get FASTA)	NCBI Sequence Viewer
	NP_001401893	(Get FASTA)	NCBI Sequence Viewer
	XP_017454738	(Get FASTA)	NCBI Sequence Viewer
	XP_017454740	(Get FASTA)	NCBI Sequence Viewer
	XP_038948019	(Get FASTA)	NCBI Sequence Viewer
	XP_038948024	(Get FASTA)	NCBI Sequence Viewer
	XP_038948025	(Get FASTA)	NCBI Sequence Viewer
	XP_063129338	(Get FASTA)	NCBI Sequence Viewer
	XP_063129339	(Get FASTA)	NCBI Sequence Viewer
	XP_063129340	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A1A5R8	(Get FASTA)	NCBI Sequence Viewer
	AAI28777	(Get FASTA)	NCBI Sequence Viewer
	EDL97992	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071734
	ENSRNOP00000074352
	ENSRNOP00000074352.2

RefSeq Acc Id:	NP_001094441 ⟸ NM_001100971
- Peptide Label:	isoform 1
- UniProtKB:	A1A5R8 (UniProtKB/Swiss-Prot), A0A0G2K7U6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRGCPENNNFLTNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSS PVDNQYNPLMAAGEGPVETLATYIKSSLLDAQGDFQETPVDQDTVSKAGRHSIATTRNCSSESE NCTARNAGEETGDSEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSVDAQRWEEVDI SVHCDVHIFNWLIKYVKRNTKDSKDCELPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMN AIVAAPCNMNCINVNLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYFNPDSRNN AATLYRCCLCKKLLTRETERRISCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWR DVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSAVNSLNTVGTGIYPCCNQKVLRF DPTQLTKGCKVRDHMVLLHDQGENDDSLSCPTAKILDDLHKHKDVIAVPFLKDPVSDPGVGSCD EKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEE ISKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDATRSLRFNQ DAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVKASVPVTARQNSSDK NQSNIPQRHLFNYVHSNFIRNSQKLETSQMFIN hide sequence

RefSeq Acc Id:	XP_017454738 ⟸ XM_017599249
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K7U6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRGCPENNNFLTNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSS PVDNQYNPLMAAGEGPVETLATYIKSSLLDAQGDFQETPVDQDTVSKAGRHSIATTRNCSSESE NCTARNAGEETGDSEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSVDAQRWEEVDI SVHCDVHIFNWLIKYVKRNTKDSKDCELPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMN AIVAAPCNMNCINVNLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYFNPDSRNN AATLYRCCLCKKLLTRETERRISCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWR DVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSAVNSLNTVGTGIYPCCNQKVLRF DPTQLTKGCKVRDHMVLLHDQGENDDSLSCPTAKILDDLHKHKDVIAVPFLKDPVSDPGVGSCD EKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEE ISKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDATRSLRFNQ DAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVKASVPVTARQNSSDK NQRGFRRLVASSTKFHRMLMLSDRQTKAATASCCSRSPKSRSLTLFSV hide sequence

RefSeq Acc Id:

XP_017454740 ⟸ XM_017599251

- Peptide Label:

isoform X4

- Sequence:

show sequence

MVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSVDAQRWEEVDISVHCDVHIFNWLIKYVKR
NTKDSKDCELPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINVNLLT
RIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYFNPDSRNNAATLYRCCLCKKLLTRET
ERRISCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRC
YQAFLCIEFSHCQYHSEVVVYSSAVNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVLL
HDQGENDDSLSCPTAKILDDLHKHKDVIAVPFLKDPVSDPGVGSCDEKGLEYEILLEPNTPWGS
KTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEISKKQRKKEKPKKFTKPP
KKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDATRSLRFNQDAQREDDQRRMSEITGHL
IKMRLGDLDRVKAKESKEFAGGIYSRLEAQVKASVPVTARQNSSDKNQRGFRRLVASSTKFHRM
LMLSDRQTKAATASCCSRSPKSRSLTLFSV

hide sequence

Ensembl Acc Id:

ENSRNOP00000075048 ⟸ ENSRNOT00000091143

Ensembl Acc Id:

ENSRNOP00000074352 ⟸ ENSRNOT00000085886

Ensembl Acc Id:

ENSRNOP00000071734 ⟸ ENSRNOT00000088116

RefSeq Acc Id:	XP_038948024 ⟸ XM_039092096
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K7U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948019 ⟸ XM_039092091
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K7U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948025 ⟸ XM_039092097
- Peptide Label:	isoform X6

RefSeq Acc Id:	NP_001401893 ⟸ NM_001414964
- Peptide Label:	isoform 2
- UniProtKB:	A0A8L2R4S9 (UniProtKB/TrEMBL), A6JQ75 (UniProtKB/TrEMBL), A0A0G2K7U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129340 ⟸ XM_063273270
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K7U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129339 ⟸ XM_063273269
- Peptide Label:	isoform X2
- UniProtKB:	A1A5R8 (UniProtKB/Swiss-Prot), A0A0G2K7U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129338 ⟸ XM_063273268
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K7U6 (UniProtKB/TrEMBL)

Protein Domains

BTB SANT SANT and BTB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A1A5R8-F1-model_v2	AlphaFold	A1A5R8	1-737	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305110	AgrOrtholog
BioCyc Gene	G2FUF-14767	BioCyc
Ensembl Genes	ENSRNOG00000054669	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000085886	ENTREZGENE
	ENSRNOT00000085886.2	UniProtKB/Swiss-Prot
	ENSRNOT00000088116	ENTREZGENE
Gene3D-CATH	Potassium Channel Kv1.1, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7133856	IMAGE-MGC_LOAD
InterPro	DUF3342	UniProtKB/Swiss-Prot
	SANBR-like	UniProtKB/Swiss-Prot
	SANT/Myb	UniProtKB/Swiss-Prot
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156804	IMAGE-MGC_LOAD
NCBI Gene	305579	ENTREZGENE
PANTHER	DUF3342 DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	PTHR20946	UniProtKB/Swiss-Prot
Pfam	DUF3342	UniProtKB/Swiss-Prot
PhenoGen	Sanbr	PhenoGen
RatGTEx	ENSRNOG00000054669	RatGTEx
UniProt	A0A0G2K7U6	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K9M0_RAT	UniProtKB/TrEMBL
	A0A8L2R4S9	ENTREZGENE, UniProtKB/TrEMBL
	A1A5R8	ENTREZGENE
	A6JQ75	ENTREZGENE, UniProtKB/TrEMBL
	K1841_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-04-12	Sanbr	SANT and BTB domain regulator of CSR	RGD1305110	similar to KIAA1841 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305110	similar to KIAA1841 protein	RGD1305110_predicted	similar to KIAA1841 protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1305110_predicted	similar to KIAA1841 protein (predicted)	LOC305579_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305579_predicted	similar to KIAA1841 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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