Chmp2a (charged multivesicular body protein 2A) - Rat Genome Database

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Gene: Chmp2a (charged multivesicular body protein 2A) Rattus norvegicus
Analyze
Symbol: Chmp2a
Name: charged multivesicular body protein 2A
RGD ID: 1305050
Description: Predicted to enable phosphatidylcholine binding activity and protein domain specific binding activity. Predicted to be involved in several processes, including mitotic nuclear division; regulation of cell cycle process; and vacuolar transport. Predicted to be located in several cellular components, including bounding membrane of organelle; chromosome; and kinetochore microtubule. Predicted to be part of ESCRT III complex; membrane coat; and nuclear pore. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chromatin modifying protein 2A; LOC365191; RGD1305050; similar to RIKEN cDNA 1500016L11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,731,212 - 82,735,088 (-)NCBIGRCr8
mRatBN7.2173,660,045 - 73,662,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,040,454 - 79,042,837 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,604,795 - 87,607,178 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0180,795,536 - 80,797,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0165,540,808 - 65,543,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,352,033 - 66,354,941 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,889,349 - 72,891,734 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,966,677 - 72,969,771 (+)NCBI
Celera160,177,374 - 60,179,759 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14505570   PMID:15173323   PMID:17928862   PMID:18687924   PMID:19056867   PMID:19946888   PMID:20458337   PMID:20616062   PMID:22660413   PMID:23045692   PMID:23051622  
PMID:23376485   PMID:23533145   PMID:24107264   PMID:24878737   PMID:26040712   PMID:28242692  


Genomics

Comparative Map Data
Chmp2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,731,212 - 82,735,088 (-)NCBIGRCr8
mRatBN7.2173,660,045 - 73,662,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,040,454 - 79,042,837 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,604,795 - 87,607,178 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0180,795,536 - 80,797,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0165,540,808 - 65,543,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,352,033 - 66,354,941 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,889,349 - 72,891,734 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,966,677 - 72,969,771 (+)NCBI
Celera160,177,374 - 60,179,759 (+)NCBICelera
Cytogenetic Map1q21NCBI
CHMP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,551,566 - 58,555,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,551,452 - 58,555,105 (-)EnsemblGRCh38hg38GRCh38
GRCh371959,062,933 - 59,066,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,754,745 - 63,758,298 (-)NCBINCBI36Build 36hg18NCBI36
Celera1956,106,112 - 56,109,665 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,373,170 - 55,376,723 (-)NCBIHuRef
CHM1_11959,056,762 - 59,060,315 (-)NCBICHM1_1
T2T-CHM13v2.01961,649,242 - 61,652,782 (-)NCBIT2T-CHM13v2.0
Chmp2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,765,933 - 12,768,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,765,937 - 12,768,734 (-)EnsemblGRCm39 Ensembl
GRCm38713,032,006 - 13,034,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,032,010 - 13,034,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,617,355 - 13,620,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,932,198 - 11,934,923 (-)NCBIMGSCv36mm8
Celera710,659,197 - 10,661,968 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.73NCBI
Chmp2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,156,828 - 1,160,056 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,156,828 - 1,160,056 (-)NCBIChiLan1.0ChiLan1.0
CHMP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,837,136 - 64,840,736 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,620,025 - 66,623,594 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,564,622 - 55,568,214 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11964,377,986 - 64,381,641 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,377,986 - 64,381,417 (-)Ensemblpanpan1.1panPan2
CHMP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,405,322 - 99,408,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,405,337 - 99,410,163 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,803,589 - 99,806,504 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,018,434 - 100,021,349 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,019,387 - 100,021,348 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,663,797 - 99,666,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,376,629 - 99,379,542 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,131,268 - 100,134,183 (+)NCBIUU_Cfam_GSD_1.0
Chmp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,983,013 - 217,986,001 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004937062133,361 - 136,329 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,102,156 - 63,104,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,102,155 - 63,105,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHMP2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,827,200 - 50,830,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,827,284 - 50,830,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660454,133,029 - 4,160,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chmp2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483245,293 - 48,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chmp2a
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:35
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000030931
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat

Markers in Region
Ubc-rs2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,663,058 - 73,663,265 (-)MAPPERmRatBN7.2
Rnor_6.0165,540,488 - 65,540,694NCBIRnor6.0
Rnor_5.0166,351,721 - 66,351,927UniSTSRnor5.0
RGSC_v3.4172,888,515 - 72,888,721UniSTSRGSC3.4
Celera160,176,540 - 60,176,746UniSTS
Cytogenetic Map1q21UniSTS
MARC_7283-7284:996687724:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,663,680 - 73,664,380 (-)MAPPERmRatBN7.2
Rnor_6.0165,539,373 - 65,540,072NCBIRnor6.0
Rnor_5.0166,350,606 - 66,351,305UniSTSRnor5.0
RGSC_v3.4172,887,400 - 72,888,099UniSTSRGSC3.4
Celera160,175,425 - 60,176,124UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006228117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000030931   ⟹   ENSRNOP00000038229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)Ensembl
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097443   ⟹   ENSRNOP00000082830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)Ensembl
RefSeq Acc Id: NM_001108906   ⟹   NP_001102376
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,732,230 - 82,734,618 (-)NCBI
mRatBN7.2173,660,045 - 73,662,433 (-)NCBI
Rnor_6.0165,541,322 - 65,543,707 (+)NCBI
Rnor_5.0166,352,033 - 66,354,941 (+)NCBI
RGSC_v3.4172,889,349 - 72,891,734 (+)RGD
Celera160,177,374 - 60,179,759 (+)RGD
Sequence:
RefSeq Acc Id: NM_001416000   ⟹   NP_001402929
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,732,230 - 82,734,744 (-)NCBI
mRatBN7.2173,660,045 - 73,662,559 (-)NCBI
RefSeq Acc Id: XM_006228117   ⟹   XP_006228179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,732,234 - 82,735,088 (-)NCBI
mRatBN7.2173,660,045 - 73,662,894 (-)NCBI
Rnor_6.0165,540,808 - 65,543,708 (+)NCBI
Rnor_5.0166,352,033 - 66,354,941 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063269019   ⟹   XP_063125089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,731,212 - 82,735,088 (-)NCBI
RefSeq Acc Id: XM_063269023   ⟹   XP_063125093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,731,212 - 82,735,088 (-)NCBI
RefSeq Acc Id: NP_001102376   ⟸   NM_001108906
- UniProtKB: B2RZB5 (UniProtKB/TrEMBL),   A6KQL1 (UniProtKB/TrEMBL),   A6KQL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228179   ⟸   XM_006228117
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZY10 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038229   ⟸   ENSRNOT00000030931
Ensembl Acc Id: ENSRNOP00000082830   ⟸   ENSRNOT00000097443
RefSeq Acc Id: NP_001402929   ⟸   NM_001416000
- UniProtKB: B2RZB5 (UniProtKB/TrEMBL),   A6KQL1 (UniProtKB/TrEMBL),   A6KQL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125093   ⟸   XM_063269023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063125089   ⟸   XM_063269019
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZB5-F1-model_v2 AlphaFold B2RZB5 1-222 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689670
Promoter ID:EPDNEW_R195
Type:initiation region
Name:Chmp2a_1
Description:charged multivesicular body protein 2A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0165,541,306 - 65,541,366EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305050 AgrOrtholog
BioCyc Gene G2FUF-60691 BioCyc
Ensembl Genes ENSRNOG00000043328 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030931.6 UniProtKB/TrEMBL
  ENSRNOT00000097443.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1230 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9088608 IMAGE-MGC_LOAD
InterPro Snf7 UniProtKB/TrEMBL
KEGG Report rno:365191 UniProtKB/TrEMBL
MGC_CLONE MGC:189527 IMAGE-MGC_LOAD
NCBI Gene 365191 ENTREZGENE
PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 2A UniProtKB/TrEMBL
  PTHR10476 UniProtKB/TrEMBL
Pfam Snf7 UniProtKB/TrEMBL
PhenoGen Chmp2a PhenoGen
RatGTEx ENSRNOG00000043328 RatGTEx
UniProt A0A8I5ZY10 ENTREZGENE, UniProtKB/TrEMBL
  A6KQL1 ENTREZGENE, UniProtKB/TrEMBL
  A6KQL2 ENTREZGENE, UniProtKB/TrEMBL
  B2RZB5 ENTREZGENE
UniProt Secondary B2RZB5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-29 Chmp2a  charged multivesicular body protein 2A  Chmp2a  chromatin modifying protein 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Chmp2a  chromatin modifying protein 2A  RGD1305050_predicted  similar to RIKEN cDNA 1500016L11 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305050_predicted  similar to RIKEN cDNA 1500016L11 (predicted)  LOC365191_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365191_predicted  similar to RIKEN cDNA 1500016L11 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL