Capn7 (calpain 7) - Rat Genome Database

Name: Capn7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Capn7 (calpain 7) Rattus norvegicus

Analyze

Symbol:

Capn7

Name:

calpain 7

RGD ID:

1304855

Description:

Predicted to enable MIT domain binding activity and cysteine-type endopeptidase activity. Predicted to be involved in positive regulation of epithelial cell migration and self proteolysis. Predicted to be located in centrosome and cytosol. Orthologous to human CAPN7 (calpain 7); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

calpain-7; LOC306260; MGC124688

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAPN7 (calpain 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Capn7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Capn7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAPN7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAPN7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Capn7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CAPN7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CAPN7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Capn7 (calpain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IDUA (alpha-L-iduronidase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CAPN7 (calpain 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Capn7 (calpain 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	capn7 (calpain 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RIM13	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	clp-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	capn7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	6,545,731 - 6,581,905 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	6,557,942 - 6,594,211 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	7,702,838 - 7,739,107 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	6,564,944 - 6,601,116 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	7,435,541 - 7,472,483 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	7,435,634 - 7,471,807 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	7,371,439 - 7,407,437 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	6,784,270 - 6,820,953 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	6,784,261 - 6,820,261 (+)	NCBI
Celera	16	8,607,596 - 8,643,420 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3p deletion syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

6-propyl-2-thiouracil (EXP)

aloxistatin (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

inulin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

propiconazole (EXP,ISO)

rimonabant (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

triadimefon (ISO)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of epithelial cell migration (ISO)

proteolysis (IBA,ISO)

self proteolysis (ISO)

Cellular Component

centrosome (ISO)

cytosol (ISO)

Molecular Function

calcium-dependent cysteine-type endopeptidase activity (IEA)

cysteine-type endopeptidase activity (IBA)

endopeptidase activity (ISO)

MIT domain binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14981075	PMID:19056867	PMID:20849418	PMID:23376485	PMID:23533145	PMID:23855590

Genomics

Comparative Map Data

Capn7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	6,545,731 - 6,581,905 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	6,557,942 - 6,594,211 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	7,702,838 - 7,739,107 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	6,564,944 - 6,601,116 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	7,435,541 - 7,472,483 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	7,435,634 - 7,471,807 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	7,371,439 - 7,407,437 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	6,784,270 - 6,820,953 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	6,784,261 - 6,820,261 (+)	NCBI
Celera	16	8,607,596 - 8,643,420 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

CAPN7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	15,206,246 - 15,252,916 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	15,206,152 - 15,252,916 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	15,247,753 - 15,294,423 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	15,222,737 - 15,269,427 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	15,222,736 - 15,269,426	NCBI
Celera	3	15,185,995 - 15,232,682 (+)	NCBI		Celera
Cytogenetic Map	3	p25.1	NCBI
HuRef	3	15,183,168 - 15,229,881 (+)	NCBI		HuRef
CHM1_1	3	15,198,625 - 15,245,309 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	15,208,655 - 15,255,322 (+)	NCBI		T2T-CHM13v2.0

Capn7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	31,058,582 - 31,093,944 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	31,058,595 - 31,093,943 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	31,336,622 - 31,371,987 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	31,336,638 - 31,371,986 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	32,149,910 - 32,185,170 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	30,165,733 - 30,200,993 (+)	NCBI		MGSCv36	mm8
Celera	14	27,595,408 - 27,630,668 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	19.1	NCBI

Capn7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	2,269,274 - 2,308,713 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	2,269,274 - 2,307,801 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAPN7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	3	15,195,685 - 15,241,747 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	15,131,774 - 15,177,836 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	15,468,890 - 15,515,528 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	15,468,890 - 15,515,528 (+)	Ensembl	panpan1.1		panPan2

CAPN7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	27,336,079 - 27,377,584 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	27,336,843 - 27,378,606 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	27,310,053 - 27,351,668 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	27,847,982 - 27,889,616 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	23	27,537,384 - 27,578,829 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	27,599,118 - 27,640,471 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	27,848,446 - 27,890,014 (-)	NCBI		UU_Cfam_GSD_1.0

Capn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	169,974,375 - 170,011,926 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	3,112,951 - 3,150,640 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936473	3,112,951 - 3,152,963 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPN7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	2,452,215 - 2,504,581 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	2,452,385 - 2,503,575 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	2,379,271 - 2,430,518 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPN7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	60,050,488 - 60,096,369 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	60,050,606 - 60,095,330 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	33,080,043 - 33,126,578 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Capn7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624822	4,896,055 - 4,947,514 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Capn7
88 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	124
Count of miRNA genes:	88
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000026323
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat

Markers in Region

RH133493

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,581,709 - 6,581,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,471,612 - 7,471,791	NCBI	Rnor6.0
Rnor_5.0	16	7,407,241 - 7,407,420	UniSTS	Rnor5.0
RGSC_v3.4	16	6,820,757 - 6,820,936	UniSTS	RGSC3.4
Celera	16	8,607,613 - 8,607,792	UniSTS
RH 3.4 Map	16	50.4	UniSTS
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	38	57	41	19	41	8	10	74	35	39	11	8
Low		5						1			2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001030037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000026323 ⟹ ENSRNOP00000026323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	6,545,731 - 6,581,905 (+)	Ensembl
Rnor_6.0 Ensembl	16	7,435,634 - 7,471,807 (+)	Ensembl

RefSeq Acc Id:

NM_001030037 ⟹ NP_001025208

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,731 - 6,581,906 (+)	NCBI
Rnor_6.0	16	7,435,634 - 7,471,808 (+)	NCBI
Rnor_5.0	16	7,371,439 - 7,407,437 (+)	NCBI
RGSC_v3.4	16	6,784,270 - 6,820,953 (+)	RGD
Celera	16	8,607,596 - 8,643,420 (-)	RGD

Sequence:

show sequence

GGTAGTGGAGGCTCCATCTTCTCCTCCTCCGCCCTCAAAAGTAAACTTTGCCACTCTGCTCGCG
GGGTCCTCAGTTCTCCTCGCAGTGCCTCCGGGCGGCGGGGGCCGGCGTCAGGGCCTGTCTGCCT
CCCCGGGCGTGGGGCCTTGGGCGCCATGGACGCGTCGGCGCTGGAGCGGGACGCCGTGCAGTTC
GCGCGGCTGGCAGTGCAGCGCGACCACGAAGGCCGCTACTCTGAGGCGGTGTTTTACTACAAGG
AAGCTGCCCAAGCCTTAATTTATGCAGAGATGGCAGGCTCCAGCCTAGAACGGATCCAAGAAAA
GATCAGTGAATATCTGGAAAGAGTCCAAGCTCTACATTCTGCAGTTCAGTCAAAAAGTACTGAT
CCTTTGAAATCAAAACATCAGTTGGATCTAGAGCGCGCCCACTTTCTTGTTACACAAGCTTTCG
ATGAGGATGAGAAGGGGAATGTGGAAGATGCCATAGAGTTGTATACAGAAGCCGTGGACCTCTG
TCTGAAAACCTCTTATGAAACTGCCGATAAGACTCTGCAAAATAAATTGAAACAGTTGGCTCGA
CAGGCACTCGATAGAGCAGAAGCATTGAGTGAACCTTTGACAAAGCCATTTTGCAAACTCAAGT
CAACAAATATGAAAACAAAGACTCCTCCAGTAAGAACACATTTTCCTCTAGGACCGAATCCTTT
CCTTGAAAAGCCTCAGCCGTTTATAAGTCCACAGTCATGTGATGCACAAGGACAGAAGTACACG
GCAGAAGAAATAGAAGTGCTCAGGACAACATCAAAAATCAATGGTGCAGAGTATGTTCCTTTCA
TGAGTGTTGATCTGAGGGAGCGCTTTGCTTACCCAATGCCTTTTTGTGATAGATTGGGCAAGCT
TCCATTATCACCTAAACAAAAAGCTACATTTTCTAAATGGGTGCGACCGGAGGATCTCACCAAC
AACCCTACAATGATATACACTGTGTCCAGTTTTAGCATAAAGCAGACTATAGTATCAGACTGTT
CCTTTGTGGCATCGTTGGCCATCAGTGCAGCATATGAGAGACGATTCAATAAGAAGTTAATCAC
CAGCATAATTTACCCACAGAATAAGGATGGAGAACCAGAGTATAATCCCTGTGGGAAGTATATG
GTAAAACTTCATCTCAATGGTGTCCCAAGAAAGGTGATAATTGATGATCAGTTACCTGTTGATC
ACAAAGGAGAATTACTATGTTCTTATTCCAACAATAAAAGTGAATTATGGGTGTCACTTATAGA
GAAAGCATACATGAAAGTTATGGGAGGATATGATTTCCCAGGATCCAACTCAAATATTGATCTG
CATGCACTGACTGGGTGGATACCGGAACGGATTGCCATGCATTCAGATAGCCAGACCTTCAGTA
AGGACAGTTCATTCAGGATGCTTTATCAAAGATTTCACAAAGGGGATGTCCTCATCACCGCATC
AACCGGAATGATGACTGAAGCTGAAGGGGAGAAGTGGGGCCTGGTTCCCACGCATGCGTATGCT
GTGTTGGATATTAGAGAGTTCAAGGGGCTGAGATTTATTCAGTTAAAAAACCCTTGGAGCCATT
TACGCTGGAAAGGCAGGTACAGTGAAAATGATGTGAAAAACTGGACCCCAGAATTGCAAAAGTA
TTTAAACTTTGATCCCCGAACAGCTCAGAAAATAGATAATGGAATATTTTGGATCTCCTGGGAT
GACCTTTGCCAGTATTATGATGTAGTTTATTTGAGTTGGAACCCAGCTCTTTTTAAAGAGTCAA
CCTGCATTCACAGTACTTGGGATGCTAAACAAGGACCTGTGAAAGATGCGTACAGCTTGGCCAA
CAACCCCCAGTACAAACTGGAGGTGCAGTGTCCACAAGGGGGTGCTGCAGTTTGGGTTTTGCTT
AGTAGACACATAACAGACAAGGATGACTTTGCAAATAACCGTGAGTTTATCACAATGGTTGTGT
ACAAGACTGACGGCAAGAAAGTCTATTACCCAGCTGACCCAGCTCCATACATTGATGGGATTCG
AATTAACAGCCCTCACTACTTGACTAAGATAAAGCTGACCACGCCTGGGACTCACACCTTCACC
CTAGTGGTTTCTCAGTATGAGAAACAGAATACGATTCATTACACTGTCCGGGTATATTCAGCTT
GCAGCTTTACTTTCTCGAAGATCCCTTCACCATACACCTTATCAAAGCGGATTAATGGAAAGTG
GAGTGGTCAAAGTGCTGGAGGATGTGGAAATTTTCAGGAGACTCACAAAAATAACCCCATCTAC
CAATTCCATATCGATAAGACTGGTCCGTTACTAATTGAGCTGAGGGGACCAAGGCAATACAGTG
TTGGATTTGAGGTTGTAGCAGTTTCCATAGCGGGAGATCCTGGTCCCCATGGCTTTCAGAGGAA
ATCTAGTGGTGACTATAGGTGTGGATTTTGCTACTTAGAACTGGAAAACATACCTGCTGGGATC
TTTAATGTCATCCCCAGTACTTTTTTGCCTAAACAAGAAGGACCCTTTTTCTTGGACTTCAATA
GTACTGTCCCCATCAAGACAACCCAACTCCAGTGATAGGACTCTCAGCTATTACTGGATTCCAT
ACCCACCAGTCTTCAGCTTCAGACAAGGAGACACATCATGACGGTGAACCATCAGAGTGGAATT
AAATCAAAAGCGCGTTACAGTGGGGTCTGGTGCTTGTTGTGGTGTTTGGATTTCAGCCAGATTT
CAGTCAGAATCACCTTAATCACCCGAAACACTGTTTACAAGGTTTTGTGCATACAGACTTGGCA
TGTGCTTCGTGGCTAACTTTGTATAAGCTACAGGTTAGGTTCAGCCATCACTGTGAAATGCTTT
TGCTAACAGGACAGGGGACTAAAGCAGGATGAGGACAACTGAGTGCAAGAGCAGGCTATGTTAG
CATCTTGAAATTCTTGTTTCCTGTTTTTACAGAGCACGTACGTTTAGCCCGTTTTTATGTTGAA
CCCACCATACATCTTAAGCAATGAATTATGTCACTGTAACTAATTTGAATTTTTCATTGTGTCT
TTAAATATTTGCTGTTGTATAGATGTTAAGCTTTAAAAAGCAGTTTAGCTTAGCATGAAGATGC
TCAGGCTTGAAGGTGGTGAGTGTTCGCTGCATCGTCCATGGTAGAGAACTGAGGTATATCTACT
GTTGCTGTTTTTAATTCTTAGCAGGTTGGTGAATGTAGTAACGGGACTGGAAATGTTCAGGTTT
AGCGTGTAGGGTTTTTAATTGCTCTGTAGTCAGTGCTCTCATCACAGGAATTTGGAGAGTCCTT
GAGAATTAGTATATGGTGATTGAGTTACACAGCATTCATAAAAAGTGAGTGGTCAGGAATTAGT
GTTTACATAAAAATCATCAGTACAGAGCGATGCTCAAGATTTTCAAGGTGTGGAAAATAGTATG
GGATCTGTCGGTGTCTCTACTTTATAATTATCAAAACTATTTCTACTGCCTTTGAATGAAATAA
AATATTTATACTTATGGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252608 ⟹ XP_006252670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI
Rnor_6.0	16	7,435,541 - 7,472,483 (+)	NCBI
Rnor_5.0	16	7,371,439 - 7,407,437 (+)	NCBI

Sequence:

show sequence

CGGCTGGTGGGCGGAGCGAGAACGCGAGAGGGGCGGCCGCCAGGGCTCCGAGCCCGGGCTGCTC
AGAGCAAGCAGTCCTCCGGGCGGGTCTGAGGTAGTGGAGGCTCCATCTTCTCCTCCTCCGCCCT
CAAAAGTAAACTTTGCCACTCTGCTCGCGGGGTCCTCAGTTCTCCTCGCAGTGCCTCCGGGCGG
CGGGGGCCGGCGTCAGGGCCTGTCTGCCTCCCCGGGCGTGGGGCCTTGGGCGCCATGGACGCGT
CGGCGCTGGAGCGGGACGCCGTGCAGTTCGCGCGGCTGGCAGTGCAGCGCGACCACGAAGGCCG
CTACTCTGAGGCGGTGTTTTACTACAAGGACTCAGTTAAACAACTTCTGTTCAAAAACTGGCCT
ACAAAATGACGCTCAGTGGTAGCTGCTTTGGAAACAGCATGAGGCCTGTGAGGTGTAGCACACA
TTCAGCTCCTGCAGAGAGGGGCTGTCACTTGCAGAAATCTGTCTGCTCTCATTAGGAAGCTGCC
CAAGCCTTAATTTATGCAGAGATGGCAGGCTCCAGCCTAGAACGGATCCAAGAAAAGATCAGTG
AATATCTGGAAAGAGTCCAAGCTCTACATTCTGCAGTTCAGTCAAAAAGTACTGATCCTTTGAA
ATCAAAACATCAGTTGGATCTAGAGCGCGCCCACTTTCTTGTTACACAAGCTTTCGATGAGGAT
GAGAAGGGGAATGTGGAAGATGCCATAGAGTTGTATACAGAAGCCGTGGACCTCTGTCTGAAAA
CCTCTTATGAAACTGCCGATAAGACTCTGCAAAATAAATTGAAACAGTTGGCTCGACAGGCACT
CGATAGAGCAGAAGCATTGAGTGAACCTTTGACAAAGCCATTTTGCAAACTCAAGTCAACAAAT
ATGAAAACAAAGACTCCTCCAGTAAGAACACATTTTCCTCTAGGACCGAATCCTTTCCTTGAAA
AGCCTCAGCCGTTTATAAGTCCACAGTCATGTGATGCACAAGGACAGAAGTACACGGCAGAAGA
AATAGAAGTGCTCAGGACAACATCAAAAATCAATGGTGCAGAGTATGTTCCTTTCATGAGTGTT
GATCTGAGGGAGCGCTTTGCTTACCCAATGCCTTTTTGTGATAGATTGGGCAAGCTTCCATTAT
CACCTAAACAAAAAGCTACATTTTCTAAATGGGTGCGACCGGAGGATCTCACCAACAACCCTAC
AATGATATACACTGTGTCCAGTTTTAGCATAAAGCAGACTATAGTATCAGACTGTTCCTTTGTG
GCATCGTTGGCCATCAGTGCAGCATATGAGAGACGATTCAATAAGAAGTTAATCACCAGCATAA
TTTACCCACAGAATAAGGATGGAGAACCAGAGTATAATCCCTGTGGGAAGTATATGGTAAAACT
TCATCTCAATGGTGTCCCAAGAAAGGTGATAATTGATGATCAGTTACCTGTTGATCACAAAGGA
GAATTACTATGTTCTTATTCCAACAATAAAAGTGAATTATGGGTGTCACTTATAGAGAAAGCAT
ACATGAAAGTTATGGGAGGATATGATTTCCCAGGATCCAACTCAAATATTGATCTGCATGCACT
GACTGGGTGGATACCGGAACGGATTGCCATGCATTCAGATAGCCAGACCTTCAGTAAGGACAGT
TCATTCAGGATGCTTTATCAAAGATTTCACAAAGGGGATGTCCTCATCACCGCATCAACCGGAA
TGATGACTGAAGCTGAAGGGGAGAAGTGGGGCCTGGTTCCCACGCATGCGTATGCTGTGTTGGA
TATTAGAGAGTTCAAGGGGCTGAGATTTATTCAGTTAAAAAACCCTTGGAGCCATTTACGCTGG
AAAGGCAGGTACAGTGAAAATGATGTGAAAAACTGGACCCCAGAATTGCAAAAGTATTTAAACT
TTGATCCCCGAACAGCTCAGAAAATAGATAATGGAATATTTTGGATCTCCTGGGATGACCTTTG
CCAGTATTATGATGTAGTTTATTTGAGTTGGAACCCAGCTCTTTTTAAAGAGTCAACCTGCATT
CACAGTACTTGGGATGCTAAACAAGGACCTGTGAAAGATGCGTACAGCTTGGCCAACAACCCCC
AGTACAAACTGGAGGTGCAGTGTCCACAAGGGGGTGCTGCAGTTTGGGTTTTGCTTAGTAGACA
CATAACAGACAAGGATGACTTTGCAAATAACCGTGAGTTTATCACAATGGTTGTGTACAAGACT
GACGGCAAGAAAGTCTATTACCCAGCTGACCCAGCTCCATACATTGATGGGATTCGAATTAACA
GCCCTCACTACTTGACTAAGATAAAGCTGACCACGCCTGGGACTCACACCTTCACCCTAGTGGT
TTCTCAGTATGAGAAACAGAATACGATTCATTACACTGTCCGGGTATATTCAGCTTGCAGCTTT
ACTTTCTCGAAGATCCCTTCACCATACACCTTATCAAAGCGGATTAATGGAAAGTGGAGTGGTC
AAAGTGCTGGAGGATGTGGAAATTTTCAGGAGACTCACAAAAATAACCCCATCTACCAATTCCA
TATCGATAAGACTGGTCCGTTACTAATTGAGCTGAGGGGACCAAGGCAATACAGTGTTGGATTT
GAGGTTGTAGCAGTTTCCATAGCGGGAGATCCTGGTCCCCATGGCTTTCAGAGGAAATCTAGTG
GTGACTATAGGTGTGGATTTTGCTACTTAGAACTGGAAAACATACCTGCTGGGATCTTTAATGT
CATCCCCAGTACTTTTTTGCCTAAACAAGAAGGACCCTTTTTCTTGGACTTCAATAGTACTGTC
CCCATCAAGACAACCCAACTCCAGTGATAGGACTCTCAGCTATTACTGGATTCCATACCCACCA
GTCTTCAGCTTCAGACAAGGAGACACATCATGACGGTGAACCATCAGAGTGGAATTAAATCAAA
AGCGCATTACAGTGGGGTCTGGTGCTTGTTGTGGTGTTTGGATTTCAGCCAGATTTCAGTCAGA
ATCACCTTAATCACCCGAAACACTGTTTACAAGGTTTTGTGCATACAGACTTGGCATGTGCTTC
GTGGCTAACTTTGTATAAGCTACAGGTTAGGTTCAGCCATCACTGTGAAATGCTTTTGCTAACA
GGACAGGGGACTAAAGCAGGATGAGGACAACTGAGTGCAAGAGCAGGCTATGTTAGCATCTTGA
AATTCTTGTTTCCTGTTTTTACAGAGCACGTACGTTTAGCCCGTTTTTATGTTGAACCCACCAT
ACATCTTAAGCAATGAATTATGTCACTGTAACTAATTTGAATTTTTCATTGTGTCTTTAAATAT
TTGCTGTTGTATAGATGTTAAGCTTTAAAAAGCAGTTTAGCTTAGCATGAAGATGCTCAGGCTT
GAAGGTGGTGAGTGTTCGCTGCATCGTCCATGGTAGAGAACTGAGGTATATCTACTGTTGCTGT
TTTTAATTCTTAGCAGGTTGGTGAATGTAGTAACGGGACTGGAAATGTTCAGGTTTAGCGTGTA
GGGTTTTTAATTGCTCTGTAGTCAGTGCTCTCATCACAGGAATTTGGAGAGTCCTTGAGAATTA
GTATATGGTGATTGAGTTACACAGCATTCATAAAAAGTGAGTGGTCAGGAATTAGTGTTTACAT
AAAAATCATCAGTACAGAGCGATGCTCAAGATTTTCAAGGTGTGGAAAATAGTATGGGATCTGT
CGGTGTCTCTACTTTATAATTATCAAAACTATTTCTACTGCCTTTGAATGAAATAAAATATTTA
TACTTATGGAGACTATGTAGTTTAATGTCTAGAACTTGGTTTGTTTAGTCTCATGCGTCCCTGG
AGAAGACAGACACGCAGAGAAATGCTTGCTTCAGTAAAACCAGTGAGATCTCACTTGGCTAAAA
TAAAAGTTCTAAGAGTTCAGCCACATGAGCTTTAGTTTCTGCTCTCAGACGTAATAGAGGCTGA
GGGCCGGCAGCTCAGTGGCACAGCCCTCACACATCACAGACAAAGGCAGCAGAGAAGAGCTGTG
TGTGAACAGTGCTGACTCCTGTAGGCTGCACTCACACAGACTTCAAAGAACTGCCATTTGAATA
CCATAAGTACAGAACAGAAATGGTCAGGACTTATTTTTCAGTATGGACTTATCACCCTGCATAT
TCTTTTTAATCTTTTCAGTGGCTAAGTCAAGCACAGGCCTTACTGATGCTTTTTACAAGGGAAA
CAAGCCTGAACGGTCCTGCTTCAGTTCACAAGCTTTAACCCTGGGCCAGGTTCAGTGGCCCGGA
TGCTTTCTATGTGGGGACAGCAGACTGGATTTGATAGTAGGAAGGTGACAATTGGATCAGAAGC
ACCACTGTAGAACAGATTTTTAAAATGAGAAATAGAGAGAGGATGGTGGCTCAGGTATCTAATT
TCAGTATACACATAGATGCTCAGACAAAGAGGACCCCCCCCCCCC

hide sequence

RefSeq Acc Id:

XM_039094447 ⟹ XP_038950375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI

RefSeq Acc Id:

XM_039094448 ⟹ XP_038950376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI

RefSeq Acc Id:

XM_039094449 ⟹ XP_038950377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI

RefSeq Acc Id:

XM_039094450 ⟹ XP_038950378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI

RefSeq Acc Id:

XM_039094451 ⟹ XP_038950379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI

RefSeq Acc Id:

XM_039094452 ⟹ XP_038950380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,545,630 - 6,581,908 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001025208	(Get FASTA)	NCBI Sequence Viewer
	XP_006252670	(Get FASTA)	NCBI Sequence Viewer
	XP_038950375	(Get FASTA)	NCBI Sequence Viewer
	XP_038950376	(Get FASTA)	NCBI Sequence Viewer
	XP_038950377	(Get FASTA)	NCBI Sequence Viewer
	XP_038950378	(Get FASTA)	NCBI Sequence Viewer
	XP_038950379	(Get FASTA)	NCBI Sequence Viewer
	XP_038950380	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99770	(Get FASTA)	NCBI Sequence Viewer
	EDL88952	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026323
	ENSRNOP00000026323.5

RefSeq Acc Id:

NP_001025208 ⟸ NM_001030037

- UniProtKB:

Q499T5 (UniProtKB/TrEMBL), E9PU30 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDASALERDAVQFARLAVQRDHEGRYSEAVFYYKEAAQALIYAEMAGSSLERIQEKISEYLERV
QALHSAVQSKSTDPLKSKHQLDLERAHFLVTQAFDEDEKGNVEDAIELYTEAVDLCLKTSYETA
DKTLQNKLKQLARQALDRAEALSEPLTKPFCKLKSTNMKTKTPPVRTHFPLGPNPFLEKPQPFI
SPQSCDAQGQKYTAEEIEVLRTTSKINGAEYVPFMSVDLRERFAYPMPFCDRLGKLPLSPKQKA
TFSKWVRPEDLTNNPTMIYTVSSFSIKQTIVSDCSFVASLAISAAYERRFNKKLITSIIYPQNK
DGEPEYNPCGKYMVKLHLNGVPRKVIIDDQLPVDHKGELLCSYSNNKSELWVSLIEKAYMKVMG
GYDFPGSNSNIDLHALTGWIPERIAMHSDSQTFSKDSSFRMLYQRFHKGDVLITASTGMMTEAE
GEKWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRWKGRYSENDVKNWTPELQKYLNFDPRTA
QKIDNGIFWISWDDLCQYYDVVYLSWNPALFKESTCIHSTWDAKQGPVKDAYSLANNPQYKLEV
QCPQGGAAVWVLLSRHITDKDDFANNREFITMVVYKTDGKKVYYPADPAPYIDGIRINSPHYLT
KIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKIPSPYTLSKRINGKWSGQSAGGC
GNFQETHKNNPIYQFHIDKTGPLLIELRGPRQYSVGFEVVAVSIAGDPGPHGFQRKSSGDYRCG
FCYLELENIPAGIFNVIPSTFLPKQEGPFFLDFNSTVPIKTTQLQ

hide sequence

RefSeq Acc Id:

XP_006252670 ⟸ XM_006252608

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGSSLERIQEKISEYLERVQALHSAVQSKSTDPLKSKHQLDLERAHFLVTQAFDEDEKGNVED
AIELYTEAVDLCLKTSYETADKTLQNKLKQLARQALDRAEALSEPLTKPFCKLKSTNMKTKTPP
VRTHFPLGPNPFLEKPQPFISPQSCDAQGQKYTAEEIEVLRTTSKINGAEYVPFMSVDLRERFA
YPMPFCDRLGKLPLSPKQKATFSKWVRPEDLTNNPTMIYTVSSFSIKQTIVSDCSFVASLAISA
AYERRFNKKLITSIIYPQNKDGEPEYNPCGKYMVKLHLNGVPRKVIIDDQLPVDHKGELLCSYS
NNKSELWVSLIEKAYMKVMGGYDFPGSNSNIDLHALTGWIPERIAMHSDSQTFSKDSSFRMLYQ
RFHKGDVLITASTGMMTEAEGEKWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRWKGRYSEN
DVKNWTPELQKYLNFDPRTAQKIDNGIFWISWDDLCQYYDVVYLSWNPALFKESTCIHSTWDAK
QGPVKDAYSLANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMVVYKTDGKKVYY
PADPAPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKIPS
PYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIDKTGPLLIELRGPRQYSVGFEVVAVSI
AGDPGPHGFQRKSSGDYRCGFCYLELENIPAGIFNVIPSTFLPKQEGPFFLDFNSTVPIKTTQL
Q

hide sequence

RefSeq Acc Id:

ENSRNOP00000026323 ⟸ ENSRNOT00000026323

RefSeq Acc Id:	XP_038950376 ⟸ XM_039094448
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038950377 ⟸ XM_039094449
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038950379 ⟸ XM_039094451
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038950375 ⟸ XM_039094447
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038950378 ⟸ XM_039094450
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038950380 ⟸ XM_039094452
- Peptide Label:	isoform X3

Protein Domains

Calpain catalytic

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q499T5-F1-model_v2	AlphaFold	Q499T5	1-813	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699932

Promoter ID:

EPDNEW_R10455

Type:

initiation region

Name:

Capn7_1

Description:

calpain 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	7,435,614 - 7,435,674	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304855	AgrOrtholog
BioCyc Gene	G2FUF-12148	BioCyc
Ensembl Genes	ENSRNOG00000019273	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026323	ENTREZGENE
	ENSRNOT00000026323.7	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.380	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
	Phosphotransferase system, lactose/cellobiose-type IIA subunit	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7932056	IMAGE-MGC_LOAD
InterPro	Calpain_cysteine_protease	UniProtKB/TrEMBL
	Calpain_domain_III	UniProtKB/TrEMBL
	Calpain_III	UniProtKB/TrEMBL
	Calpain_III_sf	UniProtKB/TrEMBL
	MIT	UniProtKB/TrEMBL
	MIT_dom_sf	UniProtKB/TrEMBL
	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C2_calpain_cat	UniProtKB/TrEMBL
KEGG Report	rno:306260	UniProtKB/TrEMBL
MGC_CLONE	MGC:124688	IMAGE-MGC_LOAD
NCBI Gene	306260	ENTREZGENE
PANTHER	CALPAIN-7	UniProtKB/TrEMBL
	CALPAIN-7	UniProtKB/TrEMBL
Pfam	Calpain_III	UniProtKB/TrEMBL
	MIT	UniProtKB/TrEMBL
	Peptidase_C2	UniProtKB/TrEMBL
PhenoGen	Capn7	PhenoGen
PRINTS	CALPAIN	UniProtKB/TrEMBL
PROSITE	CALPAIN_CAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019273	RatGTEx
SMART	calpain_III	UniProtKB/TrEMBL
	CysPc	UniProtKB/TrEMBL
	MIT	UniProtKB/TrEMBL
Superfamily-SCOP	Peptidase_C2	UniProtKB/TrEMBL
	SSF116846	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	A6KFZ5_RAT	UniProtKB/TrEMBL
	E9PU30	ENTREZGENE
	Q499T5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	E9PU30	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Capn7	calpain 7	Capn7_predicted	calpain 7 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Capn7_predicted	calpain 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar