Atad2 (ATPase family, AAA domain containing 2) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atad2 (ATPase family, AAA domain containing 2) Rattus norvegicus
Analyze
Symbol: Atad2
Name: ATPase family, AAA domain containing 2
RGD ID: 1304849
Description: Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human ATAD2 (ATPase family AAA domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase family AAA domain-containing protein 2; LOC314993
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2789,634,123 - 89,676,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,634,123 - 89,676,738 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx791,510,806 - 91,552,656 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0793,712,080 - 93,753,926 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0793,529,908 - 93,571,726 (-)NCBIRnor_WKY
Rnor_6.0797,984,754 - 98,027,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,984,862 - 98,026,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0798,589,668 - 98,631,755 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4794,808,296 - 94,851,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1794,822,723 - 94,886,549 (-)NCBI
Celera786,405,901 - 86,448,563 (-)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,1-dichloroethene  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
adefovir pivoxil  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glycerol 2-phosphate  (ISO)
indole-3-methanol  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (EXP)
Senkirkine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17998543   PMID:19056867  


Genomics

Comparative Map Data
Atad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2789,634,123 - 89,676,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,634,123 - 89,676,738 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx791,510,806 - 91,552,656 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0793,712,080 - 93,753,926 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0793,529,908 - 93,571,726 (-)NCBIRnor_WKY
Rnor_6.0797,984,754 - 98,027,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,984,862 - 98,026,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0798,589,668 - 98,631,755 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4794,808,296 - 94,851,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1794,822,723 - 94,886,549 (-)NCBI
Celera786,405,901 - 86,448,563 (-)NCBICelera
Cytogenetic Map7q33NCBI
ATAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388123,319,850 - 123,416,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8123,319,850 - 123,416,350 (-)EnsemblGRCh38hg38GRCh38
GRCh378124,332,090 - 124,408,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368124,401,922 - 124,477,868 (-)NCBINCBI36Build 36hg18NCBI36
Build 348124,401,921 - 124,477,868NCBI
Celera8120,520,748 - 120,596,364 (-)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8119,657,854 - 119,734,371 (-)NCBIHuRef
CHM1_18124,372,552 - 124,449,135 (-)NCBICHM1_1
T2T-CHM13v2.08124,450,947 - 124,547,457 (-)NCBIT2T-CHM13v2.0
Atad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391557,957,440 - 57,998,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1557,957,440 - 57,998,478 (-)EnsemblGRCm39 Ensembl
GRCm381558,094,044 - 58,135,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,094,044 - 58,135,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv371557,925,602 - 57,966,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361557,924,128 - 57,965,152 (-)NCBIMGSCv36mm8
Celera1559,614,067 - 59,655,014 (-)NCBICelera
Cytogenetic Map15D1NCBI
Atad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555402,166,636 - 2,227,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555402,166,708 - 2,228,077 (-)NCBIChiLan1.0ChiLan1.0
ATAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan18116,262,588 - 116,359,334 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08120,014,794 - 120,091,465 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18122,770,893 - 122,846,957 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8122,770,893 - 122,846,958 (-)Ensemblpanpan1.1panPan2
ATAD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11321,667,214 - 21,733,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1321,667,221 - 21,732,939 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1321,632,745 - 21,707,473 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,007,285 - 22,082,006 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,007,040 - 22,073,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11321,735,686 - 21,810,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01321,838,143 - 21,912,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01322,081,783 - 22,156,297 (-)NCBIUU_Cfam_GSD_1.0
Atad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,560,734 - 16,617,531 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,986,967 - 24,043,082 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647023,986,895 - 24,043,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl416,012,561 - 16,082,638 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1416,012,278 - 16,082,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,755,859 - 16,823,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18117,894,362 - 117,977,699 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8117,895,112 - 117,977,167 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603922,235,801 - 22,339,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473531,570,451 - 31,636,552 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473531,570,336 - 31,637,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atad2
173 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:119
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000008508
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat

Markers in Region
RH128307  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2789,634,245 - 89,634,426 (-)MAPPERmRatBN7.2
Rnor_6.0798,027,076 - 98,027,256NCBIRnor6.0
Rnor_5.0798,631,452 - 98,631,632UniSTSRnor5.0
RGSC_v3.4794,808,419 - 94,808,599UniSTSRGSC3.4
Celera786,406,024 - 86,406,204UniSTS
RH 3.4 Map7607.7UniSTS
Cytogenetic Map7q33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 39 23 19 23 1 1 39 22 38 10 1
Low 1 17 18 18 18 7 9 35 13 3 1 7
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000008508   ⟹   ENSRNOP00000008508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl789,636,271 - 89,676,738 (-)Ensembl
Rnor_6.0 Ensembl797,984,862 - 98,026,052 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112469   ⟹   ENSRNOP00000079642
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl789,634,123 - 89,676,738 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117872   ⟹   ENSRNOP00000081791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl789,635,448 - 89,664,208 (-)Ensembl
RefSeq Acc Id: NM_001134879   ⟹   NP_001128351
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2789,634,123 - 89,676,738 (-)NCBI
Rnor_6.0797,984,754 - 98,027,379 (+)NCBI
Rnor_5.0798,589,668 - 98,631,755 (+)NCBI
RGSC_v3.4794,808,296 - 94,851,986 (-)RGD
Celera786,405,901 - 86,448,563 (-)RGD
Sequence:
RefSeq Acc Id: XM_039079207   ⟹   XP_038935135
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2789,634,124 - 89,676,046 (-)NCBI
RefSeq Acc Id: XM_039079209   ⟹   XP_038935137
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2789,634,124 - 89,665,629 (-)NCBI
RefSeq Acc Id: XM_039079210   ⟹   XP_038935138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2789,634,124 - 89,661,520 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001128351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935135 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935137 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935138 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16226 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001128351   ⟸   NM_001134879
- UniProtKB: A0A8I5ZNS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000008508   ⟸   ENSRNOT00000008508
RefSeq Acc Id: XP_038935135   ⟸   XM_039079207
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935137   ⟸   XM_039079209
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935138   ⟸   XM_039079210
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000081791   ⟸   ENSRNOT00000117872
RefSeq Acc Id: ENSRNOP00000079642   ⟸   ENSRNOT00000112469
Protein Domains
Bromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJD2-F1-model_v2 AlphaFold D3ZJD2 1-1373 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695346
Promoter ID:EPDNEW_R5871
Type:multiple initiation site
Name:Atad2_1
Description:ATPase family, AAA domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0797,984,766 - 97,984,826EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304849 AgrOrtholog
BioCyc Gene G2FUF-33329 BioCyc
Ensembl Genes ENSRNOG00000025604 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000008508.7 UniProtKB/TrEMBL
  ENSRNOP00000079642 ENTREZGENE
  ENSRNOP00000079642.1 UniProtKB/TrEMBL
  ENSRNOP00000081791 ENTREZGENE
  ENSRNOP00000081791.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008508.8 UniProtKB/TrEMBL
  ENSRNOT00000112469 ENTREZGENE
  ENSRNOT00000112469.1 UniProtKB/TrEMBL
  ENSRNOT00000117872 ENTREZGENE
  ENSRNOT00000117872.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA_lid_3 UniProtKB/TrEMBL
  ATAD2-like UniProtKB/TrEMBL
  ATPase_AAA+_core UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:314993 UniProtKB/TrEMBL
NCBI Gene 314993 ENTREZGENE
PANTHER PTHR23069 UniProtKB/TrEMBL
  PTHR23069:SF4 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
PhenoGen Atad2 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZNS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVR6_RAT UniProtKB/TrEMBL
  D3ZJD2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Atad2  ATPase family, AAA domain containing 2   Atad2_predicted  ATPase family, AAA domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Atad2_predicted  ATPase family, AAA domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED