Slc39a13 (solute carrier family 39 member 13) - Rat Genome Database

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Gene: Slc39a13 (solute carrier family 39 member 13) Rattus norvegicus
Analyze
Symbol: Slc39a13
Name: solute carrier family 39 member 13
RGD ID: 1304695
Description: Predicted to enable protein homodimerization activity and zinc ion transmembrane transporter activity. Involved in response to zinc ion. Predicted to be located in several cellular components, including Golgi membrane; endoplasmic reticulum membrane; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 3. Orthologous to human SLC39A13 (solute carrier family 39 member 13); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC295928; MGC124816; solute carrier family 39 (metal ion transporter), member 13; solute carrier family 39 (zinc transporter), member 13; zinc transporter ZIP13; ZIP-13; zrt- and Irt-like protein 13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,495,229 - 97,504,279 (-)NCBIGRCr8
mRatBN7.2377,039,411 - 77,047,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,037,565 - 77,049,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,517,903 - 80,525,744 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,116,918 - 89,124,755 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,968,086 - 86,975,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,884,524 - 79,892,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,884,524 - 79,892,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,593,277 - 86,601,315 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,421,153 - 75,429,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,317,524 - 75,325,349 (-)NCBI
Celera376,248,117 - 76,256,038 (-)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The zinc transporter SLC39A13/ZIP13 is required for connective tissue development; its involvement in BMP/TGF-beta signaling pathways. Fukada T, etal., PLoS One. 2008;3(11):e3642. doi: 10.1371/journal.pone.0003642. Epub 2008 Nov 5.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Spondylocheiro dysplastic form of the Ehlers-Danlos syndrome--an autosomal-recessive entity caused by mutations in the zinc transporter gene SLC39A13. Giunta C, etal., Am J Hum Genet. 2008 Jun;82(6):1290-305. doi: 10.1016/j.ajhg.2008.05.001.
4. Over-expression of Zip-13 mRNA in kidney and lung during dietary zinc deficiency in Wistar rats. Guo L, etal., Mol Biol Rep. 2011 Mar;38(3):1869-74. doi: 10.1007/s11033-010-0304-y. Epub 2010 Sep 22.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Zinc deficiency mediates alcohol-induced apoptotic cell death in the liver of rats through activating ER and mitochondrial cell death pathways. Sun Q, etal., Am J Physiol Gastrointest Liver Physiol. 2015 May 1;308(9):G757-66. doi: 10.1152/ajpgi.00442.2014. Epub 2015 Mar 12.
Additional References at PubMed
PMID:12477932   PMID:21917916  


Genomics

Comparative Map Data
Slc39a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,495,229 - 97,504,279 (-)NCBIGRCr8
mRatBN7.2377,039,411 - 77,047,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,037,565 - 77,049,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,517,903 - 80,525,744 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,116,918 - 89,124,755 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,968,086 - 86,975,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,884,524 - 79,892,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,884,524 - 79,892,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,593,277 - 86,601,315 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,421,153 - 75,429,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,317,524 - 75,325,349 (-)NCBI
Celera376,248,117 - 76,256,038 (-)NCBICelera
Cytogenetic Map3q24NCBI
SLC39A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,407,276 - 47,416,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,407,132 - 47,416,496 (+)EnsemblGRCh38hg38GRCh38
GRCh371147,428,827 - 47,438,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,386,758 - 47,394,623 (+)NCBINCBI36Build 36hg18NCBI36
Build 341147,386,757 - 47,394,622NCBI
Celera1147,571,745 - 47,579,746 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,130,928 - 47,137,364 (+)NCBIHuRef
CHM1_11147,429,277 - 47,437,283 (+)NCBICHM1_1
T2T-CHM13v2.01147,566,179 - 47,575,404 (+)NCBIT2T-CHM13v2.0
Slc39a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,892,136 - 90,900,754 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,892,136 - 90,900,762 (-)EnsemblGRCm39 Ensembl
GRCm38291,061,781 - 91,070,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,061,791 - 91,070,417 (-)EnsemblGRCm38mm10GRCm38
MGSCv37290,901,948 - 90,910,378 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,862,630 - 90,871,060 (-)NCBIMGSCv36mm8
Celera292,446,265 - 92,454,697 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.44NCBI
Slc39a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422845,678 - 852,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955422845,076 - 852,772 (-)NCBIChiLan1.0ChiLan1.0
SLC39A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,611,099 - 49,619,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,630,934 - 49,639,235 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,356,465 - 47,364,710 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,910,552 - 47,918,014 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,910,551 - 47,918,014 (+)Ensemblpanpan1.1panPan2
SLC39A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,221,311 - 42,229,992 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,222,333 - 42,227,361 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,951,851 - 40,960,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,877,035 - 42,885,762 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,877,036 - 42,884,329 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,363,637 - 42,372,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,918,606 - 41,927,337 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,648,054 - 42,656,786 (-)NCBIUU_Cfam_GSD_1.0
Slc39a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,699,562 - 19,714,178 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,816,049 - 1,825,892 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,811,479 - 1,825,857 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,194,017 - 15,210,425 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,194,028 - 15,202,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,400,675 - 16,409,565 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,899,349 - 17,907,165 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,899,030 - 17,905,850 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,200,824 - 115,208,776 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,368,965 - 1,375,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,368,965 - 1,376,378 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc39a13
32 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:578
Count of miRNA genes:261
Interacting mature miRNAs:327
Transcripts:ENSRNOT00000016191
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
RH130983  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2377,039,514 - 77,039,701 (+)MAPPERmRatBN7.2
Rnor_6.0379,884,628 - 79,884,814NCBIRnor6.0
Rnor_5.0386,593,381 - 86,593,567UniSTSRnor5.0
RGSC_v3.4375,421,257 - 75,421,443UniSTSRGSC3.4
Celera376,248,221 - 76,248,407UniSTS
Cytogenetic Map3q24UniSTS
BE108715  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2377,039,049 - 77,039,218 (+)MAPPERmRatBN7.2
Rnor_6.0379,884,163 - 79,884,331NCBIRnor6.0
Rnor_5.0386,592,916 - 86,593,084UniSTSRnor5.0
RGSC_v3.4375,420,792 - 75,420,960UniSTSRGSC3.4
Celera376,247,756 - 76,247,924UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000016191   ⟹   ENSRNOP00000016191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,039,400 - 77,047,331 (-)Ensembl
Rnor_6.0 Ensembl379,884,524 - 79,892,429 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098235   ⟹   ENSRNOP00000096044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,037,565 - 77,047,216 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105219   ⟹   ENSRNOP00000089562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,039,405 - 77,049,226 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112322   ⟹   ENSRNOP00000078410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl377,039,432 - 77,046,457 (-)Ensembl
RefSeq Acc Id: NM_001399258   ⟹   NP_001386187
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,503,044 (-)NCBI
mRatBN7.2377,039,411 - 77,047,226 (-)NCBI
RefSeq Acc Id: NM_001399259   ⟹   NP_001386188
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,503,044 (-)NCBI
mRatBN7.2377,039,411 - 77,047,226 (-)NCBI
RefSeq Acc Id: NR_174175
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,503,044 (-)NCBI
mRatBN7.2377,039,411 - 77,047,226 (-)NCBI
RefSeq Acc Id: NR_174176
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,503,044 (-)NCBI
mRatBN7.2377,039,411 - 77,047,226 (-)NCBI
RefSeq Acc Id: XM_039104519   ⟹   XP_038960447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,499,203 (-)NCBI
mRatBN7.2377,039,411 - 77,043,385 (-)NCBI
RefSeq Acc Id: XM_063283288   ⟹   XP_063139358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,503,231 (-)NCBI
RefSeq Acc Id: XM_063283289   ⟹   XP_063139359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,495,229 - 97,504,279 (-)NCBI
RefSeq Acc Id: XM_063283290   ⟹   XP_063139360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,497,157 - 97,504,279 (-)NCBI
RefSeq Acc Id: XM_063283291   ⟹   XP_063139361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,497,149 - 97,504,279 (-)NCBI
RefSeq Acc Id: XM_063283292   ⟹   XP_063139362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,497,146 - 97,504,279 (-)NCBI
RefSeq Acc Id: XR_010064578
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,496,807 - 97,504,279 (-)NCBI
Ensembl Acc Id: ENSRNOP00000016191   ⟸   ENSRNOT00000016191
RefSeq Acc Id: XP_038960447   ⟸   XM_039104519
- Peptide Label: isoform X6
- UniProtKB: A6HNA5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089562   ⟸   ENSRNOT00000105219
Ensembl Acc Id: ENSRNOP00000078410   ⟸   ENSRNOT00000112322
Ensembl Acc Id: ENSRNOP00000096044   ⟸   ENSRNOT00000098235
RefSeq Acc Id: NP_001386188   ⟸   NM_001399259
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A8I6AA51 (UniProtKB/TrEMBL),   A0A8I6GLF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386187   ⟸   NM_001399258
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A8I6AA51 (UniProtKB/TrEMBL),   A6HNA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139359   ⟸   XM_063283289
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AA51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139358   ⟸   XM_063283288
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139362   ⟸   XM_063283292
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063139361   ⟸   XM_063283291
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139360   ⟸   XM_063283290
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2M1K6-F1-model_v2 AlphaFold Q2M1K6 1-361 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692205
Promoter ID:EPDNEW_R2730
Type:initiation region
Name:Slc39a13_1
Description:solute carrier family 39 member 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0379,892,313 - 79,892,373EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304695 AgrOrtholog
BioCyc Gene G2FUF-48752 BioCyc
Ensembl Genes ENSRNOG00000011981 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016191 ENTREZGENE
  ENSRNOT00000112322 ENTREZGENE
IMAGE_CLONE IMAGE:7933412 IMAGE-MGC_LOAD
InterPro ZIP UniProtKB/Swiss-Prot
MGC_CLONE MGC:124816 IMAGE-MGC_LOAD
NCBI Gene 295928 ENTREZGENE
PANTHER ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 UniProtKB/Swiss-Prot
  ZINC TRANSPORTER ZIP13 UniProtKB/Swiss-Prot
Pfam Zip UniProtKB/Swiss-Prot
PhenoGen Slc39a13 PhenoGen
RatGTEx ENSRNOG00000011981 RatGTEx
UniProt A0A8I6AA51 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G1R5_RAT UniProtKB/TrEMBL
  A0A8I6GLF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q8T9_RAT UniProtKB/TrEMBL
  A6HNA4 ENTREZGENE, UniProtKB/TrEMBL
  A6HNA5 ENTREZGENE, UniProtKB/TrEMBL
  Q2M1K6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc39a13  solute carrier family 39 member 13  Slc39a13  solute carrier family 39 (zinc transporter), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-16 Slc39a13  solute carrier family 39 (zinc transporter), member 13  Slc39a13  solute carrier family 39 (metal ion transporter), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Slc39a13  solute carrier family 39 (metal ion transporter), member 13  Slc39a13  solute carrier family 39 (zinc transporter), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Slc39a13  solute carrier family 39 (zinc transporter), member 13  Slc39a13_predicted  solute carrier family 39 (zinc transporter), member 13 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Slc39a13_predicted  solute carrier family 39 (zinc transporter), member 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED