Tenm4 (teneurin transmembrane protein 4) - Rat Genome Database

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Gene: Tenm4 (teneurin transmembrane protein 4) Rattus norvegicus
Analyze
Symbol: Tenm4
Name: teneurin transmembrane protein 4
RGD ID: 1304658
Description: Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; neurogenesis; and regulation of nervous system development. Predicted to act upstream of or within cardiac cell fate specification; cardiac muscle cell proliferation; and gastrulation with mouth forming second. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be active in glutamatergic synapse and neuron projection. Human ortholog(s) of this gene implicated in essential tremor 5. Orthologous to human TENM4 (teneurin transmembrane protein 4); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC308831; odd Oz/ten-m homolog 4; odd Oz/ten-m homolog 4 (Drosophila); odz, odd Oz/ten-m homolog 4; odz, odd Oz/ten-m homolog 4 (Drosophila); Odz4; teneurin-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,699,611 - 160,674,549 (+)NCBIGRCr8
mRatBN7.21149,895,097 - 151,263,315 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1158,546,622 - 159,246,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,726,784 - 166,426,618 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01158,600,249 - 159,300,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,183,858 - 161,885,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,401,527 - 161,880,923 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,398,579 - 168,098,526 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,661,907 - 154,172,817 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11153,887,034 - 154,251,205 (+)NCBI
Celera1148,886,384 - 149,364,243 (+)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
Aflatoxin B2 alpha  (ISO)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
choline  (ISO)
chrysene  (ISO)
cocaine  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
crocidolite asbestos  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
hydroquinone  (ISO)
iron dichloride  (ISO)
L-methionine  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
paracetamol  (EXP)
progesterone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9649432   PMID:12000766   PMID:15489520   PMID:17350578   PMID:22562803   PMID:22915103   PMID:26188006  


Genomics

Comparative Map Data
Tenm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,699,611 - 160,674,549 (+)NCBIGRCr8
mRatBN7.21149,895,097 - 151,263,315 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1158,546,622 - 159,246,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,726,784 - 166,426,618 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01158,600,249 - 159,300,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,183,858 - 161,885,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,401,527 - 161,880,923 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,398,579 - 168,098,526 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,661,907 - 154,172,817 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11153,887,034 - 154,251,205 (+)NCBI
Celera1148,886,384 - 149,364,243 (+)NCBICelera
Cytogenetic Map1q32NCBI
TENM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381178,652,829 - 79,441,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1178,652,829 - 79,441,030 (-)EnsemblGRCh38hg38GRCh38
GRCh371178,363,874 - 79,152,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361178,041,976 - 78,200,833 (-)NCBINCBI36Build 36hg18NCBI36
Build 341178,041,976 - 78,090,762NCBI
Celera1175,672,814 - 76,460,814 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1174,661,417 - 75,448,039 (-)NCBIHuRef
CHM1_11178,247,331 - 79,034,525 (-)NCBICHM1_1
T2T-CHM13v2.01178,586,105 - 79,375,273 (-)NCBIT2T-CHM13v2.0
Tenm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39795,550,262 - 96,560,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl795,820,453 - 96,560,300 (+)EnsemblGRCm39 Ensembl
GRCm38796,171,244 - 96,911,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl796,171,246 - 96,911,093 (+)EnsemblGRCm38mm10GRCm38
MGSCv377103,359,147 - 104,057,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36796,046,438 - 96,782,444 (+)NCBIMGSCv36mm8
MGSCv36785,907,725 - 86,643,173 (+)NCBIMGSCv36mm8
Celera794,700,659 - 94,907,583 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map752.53NCBI
Tenm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541412,867,974 - 13,364,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541412,649,128 - 13,364,523 (+)NCBIChiLan1.0ChiLan1.0
TENM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2979,585,890 - 82,588,852 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11180,629,711 - 81,413,847 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01173,712,808 - 75,001,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11177,333,644 - 78,113,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1177,338,422 - 77,743,909 (-)Ensemblpanpan1.1panPan2
TENM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12117,819,846 - 20,234,096 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2119,732,991 - 20,230,305 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2119,397,551 - 20,128,989 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02119,698,863 - 20,436,994 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2119,932,722 - 20,432,290 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12119,484,108 - 20,214,667 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02119,698,080 - 20,429,003 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02119,623,353 - 20,352,628 (+)NCBIUU_Cfam_GSD_1.0
Tenm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494765,545,901 - 66,294,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364987,145,483 - 7,658,860 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364987,145,510 - 7,868,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl913,045,196 - 13,820,420 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1913,040,615 - 13,826,957 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2914,324,407 - 14,402,233 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TENM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,864,570 - 70,450,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,869,359 - 70,110,710 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604352,836,270 - 55,860,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tenm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,643,076 - 2,149,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,643,173 - 2,374,330 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tenm4
10340 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:45
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000015181
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat

Markers in Region
D1Rat44  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,872,626 - 150,872,737 (+)MAPPERmRatBN7.2
Rnor_6.01161,493,758 - 161,493,868NCBIRnor6.0
Rnor_5.01167,707,459 - 167,707,569UniSTSRnor5.0
RGSC_v3.41153,754,139 - 153,754,250RGDRGSC3.4
RGSC_v3.41153,754,140 - 153,754,250UniSTSRGSC3.4
RGSC_v3.11153,832,546 - 153,832,656RGD
Celera1148,978,583 - 148,978,693UniSTS
RH 3.4 Map11161.5RGD
RH 3.4 Map11161.5UniSTS
RH 2.0 Map1770.2RGD
FHH x ACI Map169.91RGD
Cytogenetic Map1q32UniSTS
D1Rat107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,090,087 - 151,090,257 (+)MAPPERmRatBN7.2
Rnor_6.01161,711,829 - 161,711,996NCBIRnor6.0
Rnor_5.01167,925,290 - 167,925,457UniSTSRnor5.0
RGSC_v3.41154,002,480 - 154,002,647UniSTSRGSC3.4
RGSC_v3.41154,002,479 - 154,002,647RGDRGSC3.4
RGSC_v3.11154,080,886 - 154,081,053RGD
Celera1149,195,503 - 149,195,670UniSTS
RH 3.4 Map11161.6RGD
RH 3.4 Map11161.6UniSTS
RH 2.0 Map1770.5RGD
SHRSP x BN Map176.83RGD
FHH x ACI Map169.95RGD
Cytogenetic Map1q32UniSTS
D1Rat158  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,700,142 - 150,700,247 (+)MAPPERmRatBN7.2
Rnor_6.01161,321,152 - 161,321,256NCBIRnor6.0
Rnor_5.01167,535,661 - 167,535,765UniSTSRnor5.0
RGSC_v3.41153,578,443 - 153,578,547UniSTSRGSC3.4
RGSC_v3.41153,578,442 - 153,578,547RGDRGSC3.4
RGSC_v3.11153,656,849 - 153,656,953RGD
Celera1148,807,683 - 148,807,801UniSTS
Celera1148,805,912 - 148,806,016UniSTS
RH 3.4 Map11164.0RGD
RH 3.4 Map11164.0UniSTS
RH 2.0 Map1772.7RGD
SHRSP x BN Map175.6399RGD
FHH x ACI Map169.95RGD
Cytogenetic Map1q32UniSTS
D1Rat140  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,162,512 - 151,162,766 (+)MAPPERmRatBN7.2
Rnor_6.01161,784,169 - 161,784,422NCBIRnor6.0
Rnor_5.01167,997,630 - 167,997,883UniSTSRnor5.0
RGSC_v3.41154,075,039 - 154,075,292UniSTSRGSC3.4
RGSC_v3.41154,074,905 - 154,075,310RGDRGSC3.4
RGSC_v3.11154,153,445 - 154,153,698RGD
Celera1149,267,898 - 149,268,151UniSTS
RH 3.4 Map11155.2RGD
RH 3.4 Map11155.2UniSTS
RH 2.0 Map1761.4RGD
SHRSP x BN Map176.83RGD
FHH x ACI Map169.95RGD
Cytogenetic Map1q32UniSTS
D1Rat322  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,933,830 - 150,933,980 (+)MAPPERmRatBN7.2
Rnor_6.01161,554,570 - 161,554,719NCBIRnor6.0
Rnor_5.01167,768,271 - 167,768,420UniSTSRnor5.0
RGSC_v3.41153,843,695 - 153,843,845RGDRGSC3.4
RGSC_v3.41153,843,696 - 153,843,845UniSTSRGSC3.4
RGSC_v3.11153,922,101 - 153,922,251RGD
Celera1149,039,407 - 149,039,556UniSTS
FHH x ACI Map169.95RGD
FHH x ACI Map169.95UniSTS
Cytogenetic Map1q32UniSTS
D1Rat274  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,055,931 - 151,056,085 (+)MAPPERmRatBN7.2
Rnor_6.01161,677,683 - 161,677,836NCBIRnor6.0
Rnor_5.01167,891,144 - 167,891,297UniSTSRnor5.0
RGSC_v3.41153,968,328 - 153,968,482RGDRGSC3.4
RGSC_v3.41153,968,329 - 153,968,482UniSTSRGSC3.4
RGSC_v3.11154,046,734 - 154,046,888RGD
Celera1149,161,336 - 149,161,489UniSTS
SHRSP x BN Map176.83RGD
SHRSP x BN Map176.83UniSTS
Cytogenetic Map1q32UniSTS
D1Rat419  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,138,342 - 151,138,561 (+)MAPPERmRatBN7.2
Rnor_6.01161,760,003 - 161,760,219NCBIRnor6.0
Rnor_5.01167,973,464 - 167,973,680UniSTSRnor5.0
RGSC_v3.41154,050,872 - 154,051,089RGDRGSC3.4
RGSC_v3.41154,050,873 - 154,051,089UniSTSRGSC3.4
RGSC_v3.11154,129,278 - 154,129,495RGD
Celera1149,243,740 - 149,243,948UniSTS
SHRSP x BN Map176.83RGD
SHRSP x BN Map176.83UniSTS
Cytogenetic Map1q32UniSTS
D1Got141  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,965,006 - 150,965,168 (+)MAPPERmRatBN7.2
Rnor_6.01161,586,347 - 161,586,508NCBIRnor6.0
Rnor_5.01167,799,810 - 167,799,971UniSTSRnor5.0
RGSC_v3.41153,874,802 - 153,874,964RGDRGSC3.4
RGSC_v3.41153,874,803 - 153,874,964UniSTSRGSC3.4
RGSC_v3.11153,953,209 - 153,953,370RGD
Celera1149,070,593 - 149,070,756UniSTS
RH 3.4 Map11161.6UniSTS
RH 3.4 Map11161.6RGD
RH 2.0 Map1767.7RGD
Cytogenetic Map1q32UniSTS
BF392093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,563,951 - 150,564,051 (+)MAPPERmRatBN7.2
Rnor_6.01161,185,379 - 161,185,478NCBIRnor6.0
Rnor_5.01167,400,487 - 167,400,586UniSTSRnor5.0
RGSC_v3.41153,440,531 - 153,440,630UniSTSRGSC3.4
Celera1148,671,512 - 148,671,611UniSTS
RH 3.4 Map11163.9UniSTS
Cytogenetic Map1q32UniSTS
BE095558  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,237,387 - 151,237,537 (+)MAPPERmRatBN7.2
Rnor_6.01161,859,046 - 161,859,195NCBIRnor6.0
Rnor_5.01168,072,507 - 168,072,656UniSTSRnor5.0
RGSC_v3.41154,149,914 - 154,150,063UniSTSRGSC3.4
Celera1149,342,581 - 149,342,730UniSTS
RH 3.4 Map11153.9UniSTS
Cytogenetic Map1q32UniSTS
AU048217  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,039,911 - 151,040,058 (+)MAPPERmRatBN7.2
Rnor_6.01161,661,238 - 161,661,382NCBIRnor6.0
Rnor_5.01167,874,699 - 167,874,843UniSTSRnor5.0
RGSC_v3.41153,952,313 - 153,952,457UniSTSRGSC3.4
Celera1149,145,330 - 149,145,474UniSTS
Cytogenetic Map1q32UniSTS
AU048672  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,911,497 - 150,911,751 (+)MAPPERmRatBN7.2
Rnor_6.01161,532,237 - 161,532,490NCBIRnor6.0
Rnor_5.01167,745,938 - 167,746,191UniSTSRnor5.0
RGSC_v3.41153,821,363 - 153,821,616UniSTSRGSC3.4
Celera1149,017,051 - 149,017,296UniSTS
Cytogenetic Map1q32UniSTS
RB2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21150,823,674 - 150,824,576 (+)MAPPERmRatBN7.2
Rnor_6.01161,444,814 - 161,445,715NCBIRnor6.0
Rnor_5.01167,658,515 - 167,659,416UniSTSRnor5.0
RGSC_v3.41153,705,194 - 153,706,095UniSTSRGSC3.4
Celera1148,929,642 - 148,930,543UniSTS
Cytogenetic Map1q32UniSTS
ODZ4_3312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,258,321 - 151,259,143 (+)MAPPERmRatBN7.2
Rnor_6.01161,880,101 - 161,880,922NCBIRnor6.0
Rnor_5.01168,093,533 - 168,094,354UniSTSRnor5.0
RGSC_v3.41154,171,972 - 154,172,793UniSTSRGSC3.4
Celera1149,363,398 - 149,364,219UniSTS
Cytogenetic Map1q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 3 2 1 2 68 18 28
Low 18 19 4 8 4 6 7 6 12 13 10 6
Below cutoff 3 15 10 10 9 10 2 4 5 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000015181   ⟹   ENSRNOP00000015181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)Ensembl
Rnor_6.0 Ensembl1161,401,527 - 161,880,923 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107189   ⟹   ENSRNOP00000089274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111362   ⟹   ENSRNOP00000097857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,018,106 - 151,259,144 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113388   ⟹   ENSRNOP00000084409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114854   ⟹   ENSRNOP00000085906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)Ensembl
RefSeq Acc Id: NM_001191628   ⟹   NP_001178557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,974,017 - 160,674,549 (+)NCBI
mRatBN7.21150,562,730 - 151,263,315 (+)NCBI
Rnor_6.01161,401,527 - 161,880,946 (+)NCBI
Rnor_5.01167,398,579 - 168,098,526 (+)NCBI
Celera1148,886,384 - 149,364,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589177   ⟹   XP_017444666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,709 - 160,674,549 (+)NCBI
mRatBN7.21150,562,383 - 151,263,315 (+)NCBI
Rnor_6.01161,183,858 - 161,885,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589178   ⟹   XP_017444667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,975,209 - 160,674,549 (+)NCBI
mRatBN7.21150,562,941 - 151,263,315 (+)NCBI
Rnor_6.01161,183,937 - 161,885,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589180   ⟹   XP_017444669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81160,181,867 - 160,674,549 (+)NCBI
mRatBN7.21150,769,623 - 151,263,315 (+)NCBI
Rnor_6.01161,391,497 - 161,885,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589181   ⟹   XP_017444670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,709 - 160,674,549 (+)NCBI
mRatBN7.21150,562,383 - 151,263,315 (+)NCBI
Rnor_6.01161,183,858 - 161,885,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113135   ⟹   XP_038969063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,076 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113137   ⟹   XP_038969065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,075 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113138   ⟹   XP_038969066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,076 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113140   ⟹   XP_038969068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,075 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113149   ⟹   XP_038969077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,076 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113152   ⟹   XP_038969080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,076 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113153   ⟹   XP_038969081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,390 - 160,674,549 (+)NCBI
mRatBN7.21150,562,078 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113154   ⟹   XP_038969082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81160,282,288 - 160,674,549 (+)NCBI
mRatBN7.21150,870,097 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113155   ⟹   XP_038969083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,699,611 - 160,674,549 (+)NCBI
mRatBN7.21149,895,097 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113163   ⟹   XP_038969091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81160,098,691 - 160,674,549 (+)NCBI
mRatBN7.21150,692,089 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113170   ⟹   XP_038969098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,699,695 - 160,674,549 (+)NCBI
mRatBN7.21149,895,097 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113171   ⟹   XP_038969099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,975,209 - 160,674,549 (+)NCBI
mRatBN7.21150,562,941 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113173   ⟹   XP_038969101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81160,098,691 - 160,674,549 (+)NCBI
mRatBN7.21150,692,089 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113177   ⟹   XP_038969105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81160,181,868 - 160,674,549 (+)NCBI
mRatBN7.21150,769,623 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_039113179   ⟹   XP_038969107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81159,973,388 - 160,674,549 (+)NCBI
mRatBN7.21150,562,075 - 151,263,315 (+)NCBI
RefSeq Acc Id: XM_063262755   ⟹   XP_063118825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,699,696 - 160,674,549 (+)NCBI
RefSeq Acc Id: XM_063262756   ⟹   XP_063118826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,699,696 - 160,674,549 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178557 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444666 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444667 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444669 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969068 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969077 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969080 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969081 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969082 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969083 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969091 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038969107 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118825 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118826 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015181
  ENSRNOP00000015181.6
  ENSRNOP00000084409
  ENSRNOP00000084409.1
  ENSRNOP00000085906
  ENSRNOP00000085906.1
  ENSRNOP00000089274
  ENSRNOP00000089274.1
  ENSRNOP00000097857.1
RefSeq Acc Id: NP_001178557   ⟸   NM_001191628
- UniProtKB: F1LZ38 (UniProtKB/TrEMBL),   A0A8I6A180 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444670   ⟸   XM_017589181
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444666   ⟸   XM_017589177
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444667   ⟸   XM_017589178
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444669   ⟸   XM_017589180
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015181   ⟸   ENSRNOT00000015181
RefSeq Acc Id: XP_038969098   ⟸   XM_039113170
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038969083   ⟸   XM_039113155
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038969065   ⟸   XM_039113137
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A177 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969068   ⟸   XM_039113140
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A177 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969107   ⟸   XM_039113179
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AKL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969063   ⟸   XM_039113135
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969066   ⟸   XM_039113138
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969077   ⟸   XM_039113149
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AKL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969080   ⟸   XM_039113152
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AKL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969081   ⟸   XM_039113153
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969099   ⟸   XM_039113171
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969101   ⟸   XM_039113173
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969091   ⟸   XM_039113163
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969105   ⟸   XM_039113177
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969082   ⟸   XM_039113154
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A180 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000084409   ⟸   ENSRNOT00000113388
RefSeq Acc Id: ENSRNOP00000097857   ⟸   ENSRNOT00000111362
RefSeq Acc Id: ENSRNOP00000085906   ⟸   ENSRNOT00000114854
RefSeq Acc Id: ENSRNOP00000089274   ⟸   ENSRNOT00000107189
RefSeq Acc Id: XP_063118826   ⟸   XM_063262756
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063118825   ⟸   XM_063262755
- Peptide Label: isoform X9
Protein Domains
EGF-like   Teneurin N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304658 AgrOrtholog
BioCyc Gene G2FUF-58468 BioCyc
Ensembl Genes ENSRNOG00000011151 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015181 ENTREZGENE
  ENSRNOT00000015181.7 UniProtKB/TrEMBL
  ENSRNOT00000107189.1 UniProtKB/TrEMBL
  ENSRNOT00000111362.1 UniProtKB/TrEMBL
  ENSRNOT00000113388.1 UniProtKB/TrEMBL
  ENSRNOT00000114854.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  RHS repeat-associated core UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  CarboxyPept-like_regulatory UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_extracell UniProtKB/TrEMBL
  haem_d1 UniProtKB/TrEMBL
  IPR006530 UniProtKB/TrEMBL
  Quino_amine_DH_bsu UniProtKB/TrEMBL
  Rhs_assc_core UniProtKB/TrEMBL
  RHS_repeat UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/TrEMBL
KEGG Report rno:308831 UniProtKB/TrEMBL
NCBI Gene 308831 ENTREZGENE
PANTHER TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/TrEMBL
  TENEURIN-4 UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/TrEMBL
  RHS_repeat UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH UniProtKB/TrEMBL
PhenoGen Tenm4 PhenoGen
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011151 RatGTEx
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP CarboxypepD_reg UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  NHL repeat UniProtKB/TrEMBL
  SSF50969 UniProtKB/TrEMBL
  SSF51004 UniProtKB/TrEMBL
UniProt A0A8I6A177 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A180 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATR6_RAT UniProtKB/TrEMBL
  F1LZ38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Tenm4  teneurin transmembrane protein 4  Odz4  odz, odd Oz/ten-m homolog 4 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Odz4  odz, odd Oz/ten-m homolog 4 (Drosophila)  Odz4  odd Oz/ten-m homolog 4 (Drosophila)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Odz4  odd Oz/ten-m homolog 4 (Drosophila)   Odz4_predicted  odd Oz/ten-m homolog 4 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Odz4_predicted  odd Oz/ten-m homolog 4 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED