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Gene: Urb1 (URB1 ribosome biogenesis homolog) Rattus norvegicus

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Symbol:

Urb1

Name:

URB1 ribosome biogenesis homolog

RGD ID:

1304621

Description:

Predicted to be involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in fibrillar center. Predicted to be active in nucleolus. Orthologous to human URB1 (URB1 ribosome biogenesis homolog); INTERACTS WITH (+)-schisandrin B; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

LOC304104; nucleolar pre-ribosomal-associated protein 1; RGD1304621; similar to Hypothetical protein KIAA0539; URB1 ribosome biogenesis 1 homolog; URB1 ribosome biogenesis 1 homolog (S. cerevisiae)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	URB1 (URB1 ribosome biogenesis homolog)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Urb1 (URB1 ribosome biogenesis 1 homolog (S. cerevisiae))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Urb1 (URB1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	URB1 (URB1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	URB1 (URB1 ribosome biogenesis homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Urb1 (URB1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	URB1 (URB1 ribosome biogenesis homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	URB1 (URB1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Urb1 (URB1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LTN1 (listerin E3 ubiquitin protein ligase 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	URB1 (URB1 ribosome biogenesis homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Urb1 (URB1 ribosome biogenesis 1 homolog (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	urb1 (URB1 ribosome biogenesis homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12499	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG12499	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T05H4.10	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	URB1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	urb1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	urb1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,490,633 - 43,551,398 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	43,490,633 - 43,551,767 (-)	Ensembl				GRCr8
mRatBN7.2	11	30,004,539 - 30,065,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,004,539 - 30,065,363 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	38,690,104 - 38,750,824 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	31,361,515 - 31,422,227 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,536,196 - 30,596,923 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	30,916,740 - 30,977,423 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	30,916,730 - 30,977,483 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	34,528,215 - 34,588,898 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	30,732,790 - 30,793,473 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,672,337 - 29,733,034 (-)	NCBI		Celera
RGSC_v3.1	11	30,738,941 - 30,818,441 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis type 1 (ISO)

autosomal dominant intellectual developmental disorder 7 (ISO)

Familial Platelet Disorder with Associated Myeloid Malignancy (ISO)

genetic disease (ISO)

Glucocorticoid Deficiency 2 (ISO)

immunodeficiency 28 (ISO)

Parkinson's disease 20 (ISO)

ZTTK syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

genistein (EXP)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

maneb (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

omega-6 fatty acid (ISO)

paracetamol (ISO)

paraquat (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

tungsten (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IBA)

maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IBA)

Cellular Component

fibrillar center (IEA,ISO)

nucleolus (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16963496	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Urb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,490,633 - 43,551,398 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	43,490,633 - 43,551,767 (-)	Ensembl				GRCr8
mRatBN7.2	11	30,004,539 - 30,065,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,004,539 - 30,065,363 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	38,690,104 - 38,750,824 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	31,361,515 - 31,422,227 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,536,196 - 30,596,923 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	30,916,740 - 30,977,423 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	30,916,730 - 30,977,483 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	34,528,215 - 34,588,898 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	30,732,790 - 30,793,473 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,672,337 - 29,733,034 (-)	NCBI		Celera
RGSC_v3.1	11	30,738,941 - 30,818,441 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

URB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	32,311,018 - 32,393,012 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	32,311,018 - 32,393,012 (-)	Ensembl			hg38	GRCh38
GRCh37	21	33,683,329 - 33,765,321 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	33,683,330 - 33,765,312 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	21	18,866,931 - 18,948,939 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	19,092,100 - 19,174,182 (-)	NCBI		HuRef
CHM1_1	21	33,245,146 - 33,327,161 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	30,680,775 - 30,762,860 (-)	NCBI		T2T-CHM13v2.0

Urb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,548,415 - 90,607,312 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,548,415 - 90,607,301 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	90,751,527 - 90,810,467 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	90,751,527 - 90,810,413 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	90,751,772 - 90,810,658 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,640,386 - 90,699,251 (-)	NCBI		MGSCv36	mm8
Celera	16	91,832,957 - 91,891,665 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	51.92	NCBI

Urb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	31,848,012 - 31,915,362 (-)	Ensembl
ChiLan1.0	NW_004955407	31,849,103 - 31,915,457 (-)	NCBI	ChiLan1.0	ChiLan1.0

URB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	28,388,428 - 28,513,989 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	23,248,051 - 23,375,791 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	18,637,996 - 18,761,045 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	32,028,801 - 32,141,275 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	32,061,966 - 32,141,275 (-)	Ensembl			panPan2	panpan1.1

URB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	27,087,196 - 27,158,144 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	27,087,570 - 27,158,164 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	27,080,534 - 27,151,483 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	27,207,657 - 27,278,618 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	27,207,735 - 27,278,625 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	27,152,622 - 27,223,569 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	27,164,342 - 27,235,271 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	27,672,375 - 27,742,811 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Urb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	27,679,168 - 27,748,856 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	9,718,925 - 9,788,666 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	9,718,981 - 9,790,094 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

URB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	195,974,790 - 196,047,863 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	195,974,790 - 196,047,882 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

URB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	59,733,260 - 59,811,990 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	59,733,902 - 59,814,018 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	2,275,305 - 2,354,903 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Urb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	20,648,230 - 20,715,549 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	20,647,661 - 20,716,262 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Urb1
281 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	408
Count of miRNA genes:	228
Interacting mature miRNAs:	268
Transcripts:	ENSRNOT00000002851
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	19456205	76331918	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	16472047	44285911	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	29528418	60324829	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	29528418	82566702	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	8436674	53436674	Rat

Markers in Region

RH129927

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,004,693 - 30,004,858 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,916,895 - 30,917,059	NCBI	Rnor6.0
Rnor_5.0	11	34,528,370 - 34,528,534	UniSTS	Rnor5.0
RGSC_v3.4	11	30,732,945 - 30,733,109	UniSTS	RGSC3.4
Celera	11	29,672,492 - 29,672,656	UniSTS
RH 3.4 Map	11	164.2	UniSTS
Cytogenetic Map	11	q11	UniSTS

BE114314

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,023,019 - 30,023,183 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,935,219 - 30,935,382	NCBI	Rnor6.0
Rnor_5.0	11	34,546,694 - 34,546,857	UniSTS	Rnor5.0
RGSC_v3.4	11	30,751,269 - 30,751,432	UniSTS	RGSC3.4
Celera	11	29,690,816 - 29,690,979	UniSTS
RH 3.4 Map	11	169.3	UniSTS
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002851 ⟹ ENSRNOP00000002851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,490,633 - 43,551,767 (-)	Ensembl
mRatBN7.2 Ensembl	11	30,004,539 - 30,065,363 (-)	Ensembl
Rnor_6.0 Ensembl	11	30,916,730 - 30,977,483 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111086 ⟹ ENSRNOP00000086072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,490,633 - 43,551,195 (-)	Ensembl
mRatBN7.2 Ensembl	11	30,004,539 - 30,065,363 (-)	Ensembl

RefSeq Acc Id:

NM_001191661 ⟹ NP_001178590

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,490,633 - 43,551,316 (-)	NCBI
mRatBN7.2	11	30,004,539 - 30,065,227 (-)	NCBI
Rnor_6.0	11	30,916,740 - 30,977,423 (-)	NCBI
Rnor_5.0	11	34,528,215 - 34,588,898 (-)	NCBI
Celera	11	29,672,337 - 29,733,034 (-)	NCBI

Sequence:

show sequence

ATGGGGGTCCCCAAGAGGAAGGCCTCAGAGAGCCCTGGCGGCGCGGCGTCCCCCGCGGGCACAT
CCAAGCGAACTCGAGCAGAGGAGTTCACTGGCGTGCGGTTCAAAACCCAGCTGAAGGATGCGCA
GGGCCCTGGACCCGCTTTGGAAGCCTTTGTCTCTGCTGCCAAGCAGCTGCCACAGGAAGACATG
TGCGATGTTGTCGAGGGCTACATCAAGATTTCCATGGAGTGTGCAGAAATTTTCCAGCTCCTGA
GTGGAGAGAAGCGACCCGAGAGTGAAGTGCTGTTAATATTTCAAGCTTTTGAGGCCATATTACT
GAGGACAGCCAGTGATCTTACACATTTCCACGTGGTGGGCACCAACATTGTGAAGAAGCTTCTG
AACAACCACATGAAGCTCCTCTGTGAATCCCTGTATGCATCTGGTTACAGGATGGCTCGAGCCT
GCCTGGACCTGATGACTGCTGTGGTGACCCAGGGCCCTGAAGCTGCCAGAGATGTGTGCAGCTG
TTTTGATTTGAATAAAAAAGCCTTGTATGCCCTGGTAACCAAGAGGGATTCAAAGGGAGTGCAT
GACGTACGGCTGGCCTATATCCAGTTTGCCCTTTCCTTCCTCATTGCAGGTGATGACAACACTA
TAGGGCAAGTGCTGGAGATAAAAGAGTTCATCCCCTGCATTTTCAGCTCAGGCATAAAGGAAGA
TAAGATTTCTACTATCAACATTTTGTTGTCCACTCTGAAAACAAAGGTGATTCACAATAAAAAC
ATCACAAAAACCCAGAAGGTTCGTTTCTTTACTGGGCAGCTTCTGAACCATATAGCTGCCCTCT
ACAACTGGAACGGGGTCTCAGATATTGTTCCAGAGAACCCAGAGAGTACGGAGATGTCTGCTGA
AGAGGCAGGGAAAGCCATGGTGAGGGACCTCGTTCATAACTTCCTGATAGACCTCTGCTGTTCT
CGAAAGCATGGGATTAGTTTTTATGACGCCTCTTTGGGGACTTCTGGCAGAGGAGGCAACCTGA
CACTCTTGCACTTCCTGTTGAGTTTGAAAACTGCAGCAGGGGATGAGCTGGTGGCCTCACTCGT
GGTAAGCATCCTGAAGGTGTGCCCAGACCTGCTGACCAAATACTTCAGGGAGGTCACATTCTCC
TTCCTCCCAAGAGTGAAGTCCACTTGGCTAAACAACGTGAAGCTGCTGAACAAGATCTATGAGG
CCCAGCCAGAGATTTCCCCGGCCTTTTGGACTAGAGAGTTTATCCCCTTGCCAAGGCTCCTGGC
GATGGTGATGGTGACCACAGTGCCTCTGGTGTGCAATAAGATCATGTTCACTCAGGCATTAAAT
TTGGACAGCATACCTGTAAAACAGTCAGCATTATCCCTTATTTCGATCATTTTGAAGAGAGCAT
TAAAAACAGTTGACCACTGTCTGGACAAAGAGATCTGGCAAGATTCAGACGTGTACACAGCTGA
GATGATGGAAGAATTTGTTCAGCTCTTCAGAGAAGCCTTGAGCAAGATTTTGCCAGATCTGAAC
ACTGTTATTTGGGTCTGGCAATCATTTAAAAAGCAAGAGATTAAGGAGAACCATGAGAAGGGGA
AGAAGAGCAGTAGCAAGACTCCTGCTGCCTCCAAAGCTGTCCATCGTGATGATGCAGAAACAAT
TCTTCTGAAATCCGTCCTGCTCCAGGTCATATGCCTCTACCAACAGGTTGTTCCCCATGTGGTC
ACGCAGTACAACTTTGACTTCAGCAAGCTCCTAAAAGGCATCATCTCTGAGCAGGGCCCTGCTG
AGGAGGCTCCTCCCATCCTGCAGCACCACATGCTGAAGGTAGCCCTGGAACTGCCTGCTAACAA
GTTTTTGTGGCTAAAGGCACAGGAAGGCCCTGAGGCAGAAATCGTTGGAGGAGAACGCTCGGTG
TTTTACCTGTTGATGAAGATGTTTGTGAATAGTAGCCATTTACAGCTCAAGTTATCCACTCAGC
GTCTGATCATGAAGATTCTTCGGGACACAGGCGTGTTCGAACACACGTGGAGAGAGTTGGAGCT
CTGGCTGGAGCGCCTGGACAGCACTGCAGAAAAGCACAAGGAAACCGTCATTCAGTTCCTGGAG
CGTATTTTATTGACACTGGTGGTGAATCCTTACTCATACACAGACAAAGCTTCTGAGTTTGTCC
AAGAAGCCAGCACCTTGCAAGGCGCTGTGGGAAAGCAGGATGCAGATGATGTCAGCATTCCCAT
CTCCCATATTGATGATGTGCTGGACATGGTGGACGTCCTGGTGGAAGGCAGTGAGGGCCTGGAT
GAGGATATTGGGTTCTTGTTAAATGAAGACATGATTCTGCTCACCTTCCCCTTCAGTGCTCTGG
TCCCTGCAGCTCTGGAAGCCAGGAATAAGCTGCTCCTCGGGACAGAATGTGAAGCAGGGGAAAG
CATCGTGGCATACATGACTGCAGTGTTGACTGACATTCTCCATACCCAGAGGGACCCCCTAGCC
CTGTGCCTTCTGCTCCAGTCTTATGACAAGTTCGAGCCTGCTAGCCTGCTCTGCTGTCAGCAGC
TTGCCCAGTTTCACAGATACTACAGTCTCTGGATTCCTGAGCAAGCCCAGGAGGCCTTGCCCTT
GCAGGTGTCTGGCACCTCAGGACCCTATACGCCCCCCTCATCTGCCTGCTTTTCCACCTTGCTG
CAAACAGCGTATGAAAGCCAAACACTTGGGGATAAGAATGTCCAGGCAAAGCTTCTAGCCGCTG
TCCCGTGCCTACCTCTGCAGCACATGCTGCGCTCAGCCAAGCAGGTCCTGCTGTACCTTAAGAG
CACCGTGGAGAACTTCAGCCAGCTGGGCAAAAGTGTGGGCCCAACTCTCCTTCAGTTCCTACTG
GGTCTCCTTAAGCACCTGGTTATCCACTCTGAGCAGCTGGACACCCAGAATCAGCAGAAGTTGG
AGGCTGCCCGTGCTGAGTCTGATCTCTTTCTGGACATGGAGTCTGTAGCTTCACTTGAGTTGGC
TACTGACAAGACAGTAGAGGAGCTGCTGGTGGCCATCCTTAAACACCCCACACTGGAGACTTGG
TTCCTGGCCCTGGAGCAGAAAGCCTTACCTCCACACACACTCAGCCCTGTCCTTGTAAAGCTCC
TTGCAGCCCAGTTCAGTGCAGGGGTCCTTCAGCTACTGGTGGCAAGTTCCCCAATTCTCCATAA
ACTGGGTCAGTTAGGCCTTCTGGCAAAGTACTCAGAAGCCATCACTCAAAGTGTATTGAGAGAG
CTCCGCACTAGGACTGTGAACTCAGCCATGACACCCAAGACCCTGCCTCAGCTGGAGGCCCTGC
GAGAGCTGCACCCATACATGGAAGGTGTCCAGATCCGAGAAGTCACCTTGGCTCTGCTGGGACT
GCCAGAGGCCCACCTGCTGACCCAGCAAGGCACACAGTGTCCCGGGAAGGAGAGACAACTGAGC
AGTCTTGGAAAGACCCTGGTACAACTGCTGACAAGCAGCCATCAGAATCGGCTGCAGAGCAGTG
AGCTACTCTGGTGTGCCGAGTATGTGCGTGGCTTGGGGGCTCTCCTCCCCACTCTGGCTGAGCA
AGAGCTGGACACTGTATTCCTTCAGACTCTTCAGAAAGACCCTGTGCTGGCCCCTGTGGTGCCA
GCTGACCTACTTGAGTACTGCCTGGTCCGACGGACGAAGGCAGCCCTGGACATTGCCAGCCTCC
TCCTCCAGTACAGCAGTACGCACCTACTGAAGTTTGAGCTGTGGTGTGGGCAGCCTGGTGTGGG
GCCCAGCCTGCAGGAGCACCTGGATGACTTCTTCCCCCTTATCCATGTGTACCTCCAACACAGG
ATGCAAGGAAGCTTCATGCGGCCAACAGAAGTATCCTCTGCTGTCACTCCTGTCTTGAGAGCCC
TGTGGAGACAAGTGCGAGACAGGTTCTTTCATATCGCTGGGCCTTCCAAACATGCGCTGCATCT
GGAGGCCCTGGCCCAGCTCATTCCATTTGCAAGAACCAAAGATCTGCGTGTCCTCATGGACCAT
TTACCCAACTTGCTTCGGACTCTGAGTAATCACAAGAGTTGGATCGTGGCGGACTCTGTTTCAG
CAGCCTTGGCAGAGTCAGCAGAGGAGCTGGCCTCCTGGAGGAAGACCCTCCTGCGGTCCTGTAT
ACAGTGGCTGGCTGTGTCCTTCAGTGGCAGGGAGCCAGAAAACGAGAACACCCAGGAGCAGGAG
AAGACAATGCTGCTCCGATTAAGCGAGTTGTTGCATGCAGTTAAGGAGGTTGACCCTGGTGACT
GGCAGCAGTTTGTGAAGACAGGACTCAAGTTTCGGTACCAGGACCTCACCTTTTTGAGGACCCT
GCTTGATGCCACAAAGCTCCTATATAGTCCAGAAAGCTCTGGGCACACAAAACTGGTCCAGCTT
TCAGTGATGCACATGATGCTCACCCAGCATTCTCTGTTCCTGCCAACCATGTTGACATCTAAAG
AAGAGGAAACTCCAGACAGTCCAGTAAAAGAAACCCTGCTGGACCTGATGTCCACAGTGGTGAG
GATGTGCCCTTCTGTCTGTGAGAGCAGCCACTTTGCTGTGCTCCTTGGGACCTACAGTGCCACC
CTCAGCATCTTGGACCAGAAGATATTACTTCTCCTCCGTGCATATGAACAGCACAGCCTCAGTC
TCATCAGTTTCAGGGTTCTGCTGTGGGGTCCAGCAGCTGTGGAGCATCACAAGACATGCCGGAG
CCTGGGCAAGTCGCTTTGGCAGCAGCCAAGCGTTGGGGACATCCTCCGCTTGCTGGACCCAGAC
CGGATGATGCAGACCATCCTGCACTTCCCACAGTACCGGAGGCTGCTTCACACTGAGGACACCG
GGGAGCCACAGGTGTTTAAGGACAAGACTGCCAGAGTGGACCTCAGCGGCCTCTATGACCCCTG
CTTTCTCCTCCACCTCTTTGGGGAACTGACCAGGCCAGAGTTTGTGGTGGATTGTCGAAAATTT
TTGGACTCAAATGCTCTGGGTCTAACTGTGGCAGCCCTCAGCAGCTATGACCCCCAGATGCGAG
CTGCGGCGTACTATGTCCTAGCAGCCTACTACTCACACCTGGAGGGAGCTCGCTTCCGGGAACA
GTCCCAAGTTCTGTACCTGCTGGACGTTGTCCGCAATGGGATTCAAGCTCCAAACCTGAGGCTC
CCTTTTACTGTGGCCCTTTTCATTGCCAAAGCAGCAGCGCAGATCTTGAGACCAGAGGAGCACA
TGTACTGGAAGATCAGCAAGTTCCTGCTGTCCCATGAGAACTTGAACATGAACAAACTGCCAGG
CTTCTACCAGTTCTTCTACAGCTCTGACTTCCAGCAAAAAACTGAACAAGAATGGGTGTTAGAA
ATTCTGCGACAGGGGATTAGAGACAAGCACTGCTATGAGCTGTGCTCCAGAAGAGGGGTGTTCC
ACATCATCTTGTCCTTCTTCAGTAGCCCCTTGTGTGACGAAGTGGCTCAGAATTGGATTCTGGA
AATCCTACAGAATGTCGCCCACATCCCCAGATCTGCCTATGAAGTCATACGTGACTATAGCCTT
TTAACGTGGATTTTACACATCCTTGAGAGCAGATTTATAGAGACTCAGTTGCTCTCCAATGTGA
TCTCCTTGCTACACACCCTATGGGTCACCAACCTGGGCAGCAGAGCAGCGGAGGAGAGAAGCCA
GCTACCTTGCCAGACTGACTGCCATGAGTCTGAGAAGACGCTTGCCTTGCACATGGTCAATGAG
TTCCTGTATGTCCTCGTTGCACTTACAAAGCATCTAAGGCCCACCTTGGCTTCCACCCAGCTGA
TGGACTTTTTCTGGACACTTGAGTCTGTGCTGAGCTATCGGGCCACTGTCATAAAGATCTTCAA
GGACATGGGCCGATTCACTGTGAACCAGGTGACACTTTCTACCAAAGATGTCCTGGTCCTCTTA
CATAAGTGGAGCCTCATTGAAAGAGACACAAAGCTCCAAGGAGAGCTGAAAGCAATCATTGAGC
AGCACCAAGCCAAGGACCTAATGAAAATGCTCAAGGATAAGCACAGGCCGCTGGGAGCTGCCCG
TGCCAAAGGCCCACGGGGCCGAGAGAAGAGGCGTAGAGAGCGGGAGGAGGAGACTGCGGAGCCC
CAGCTGGAAGCATCTACTTTGGAGAAATGCAAGGACCTCCTGAGAGCCACACTGACCCACTGGG
GGCCAGCTGTCCCCTTGCCTGGACCCACGCAAGAGTCTGTGGGCCAGGCAATCCCCAAGAGTAA
AGCACTGGGCTCTGCGCATGCCGCTGTTTCTTTGGTGGCCGGCTGGGTGCTTCGGTCATTGGCC
GAGCGTCCCCTCAGCAGGGCAGAAGTCACAAGACTCCTTGACTGGCTCAAGAGCCACATACTGC
CACAGCCCATGGTCGTGGCTGACCTCCTCAGGGACAGTGCTGTGAAGACAGGCATCTTTAAGCT
GTACAGTCGTCACTGCAATGCCCAGGGCCTGGTGGGGCCGGCACAGGATGTGGCCTGCAAGTTC
AGCATGGTCATGCTGCAGTTGTTGGTGGCCCAGGGACGGACACCTAGCCCTTTCCACTCGGTGG
CAGAGGCCCTGTGCCTTGATTCTCTGAACGAAAAGGATGAAGCCAAACGAGCTCCCGCAGCATT
CCTGGTGTCTCTGTATATTAAGGACATCTGGCTGGGGGCCCAGCAGCCAGACACCTTCCTTGCT
CACATCCAAACGGTCTGTGAAGCTTCAAAGGACATGGCACTTGGTGAGTCAGAGGCCTTGGTTG
TGCTCTGCAGGGACGTGGGCTCCTCAGCCCAGAGCTTGACTCACTCCTGCTGAACGGAGCCCCA
GCGGGTTTCAGGAGGCTTAAGCTGGTTCCGAGACATAAACTGATACATGCAATTATTTTCCAGC
AAGAAAAGCTAAGAAGACTTTATTCAACTATCCAACAAGTTAAGCCCAGGTGTTGGCCTTATGG
TCAGATCTAGTGACTGGGGCACTGCTAGGCCATAAGGCCTGAGGAGGCCTCAGATGGCCTCCGT
CCTCTCTCCTGAAGCCCCTGACAGAGGGGCTAAGTGCTGCTCATGGATTGGTATTAAACTGAAA
TGTGAAAACTCTCATGTCTTCAATTGTACATGACATGTGTAAATTGCCTGTTTGCTGTTTTAAG
AAGGTTGTATTAAAGTCCCTAAGGTATAAACTGCTACTTTGGGAAGACAGTCTATTTTTAATTA
TATTTCAAAGAGGATTTTTGAGTTTTATAATGTTTTGTTAATAAAGAGCTATTTTTGTGA

hide sequence

RefSeq Acc Id:

XM_039088427 ⟹ XP_038944355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,501,410 - 43,551,398 (-)	NCBI
mRatBN7.2	11	30,017,261 - 30,065,315 (-)	NCBI

RefSeq Acc Id:

XM_039088428 ⟹ XP_038944356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,508,462 - 43,551,397 (-)	NCBI
mRatBN7.2	11	30,022,376 - 30,065,315 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178590	(Get FASTA)	NCBI Sequence Viewer
	XP_038944355	(Get FASTA)	NCBI Sequence Viewer
	XP_038944356	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002851
	ENSRNOP00000002851.6
	ENSRNOP00000086072.1

RefSeq Acc Id:

NP_001178590 ⟸ NM_001191661

- UniProtKB:

D4A7S4 (UniProtKB/TrEMBL), A0A8I6GDM7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGVPKRKASESPGGAASPAGTSKRTRAEEFTGVRFKTQLKDAQGPGPALEAFVSAAKQLPQEDM
CDVVEGYIKISMECAEIFQLLSGEKRPESEVLLIFQAFEAILLRTASDLTHFHVVGTNIVKKLL
NNHMKLLCESLYASGYRMARACLDLMTAVVTQGPEAARDVCSCFDLNKKALYALVTKRDSKGVH
DVRLAYIQFALSFLIAGDDNTIGQVLEIKEFIPCIFSSGIKEDKISTINILLSTLKTKVIHNKN
ITKTQKVRFFTGQLLNHIAALYNWNGVSDIVPENPESTEMSAEEAGKAMVRDLVHNFLIDLCCS
RKHGISFYDASLGTSGRGGNLTLLHFLLSLKTAAGDELVASLVVSILKVCPDLLTKYFREVTFS
FLPRVKSTWLNNVKLLNKIYEAQPEISPAFWTREFIPLPRLLAMVMVTTVPLVCNKIMFTQALN
LDSIPVKQSALSLISIILKRALKTVDHCLDKEIWQDSDVYTAEMMEEFVQLFREALSKILPDLN
TVIWVWQSFKKQEIKENHEKGKKSSSKTPAASKAVHRDDAETILLKSVLLQVICLYQQVVPHVV
TQYNFDFSKLLKGIISEQGPAEEAPPILQHHMLKVALELPANKFLWLKAQEGPEAEIVGGERSV
FYLLMKMFVNSSHLQLKLSTQRLIMKILRDTGVFEHTWRELELWLERLDSTAEKHKETVIQFLE
RILLTLVVNPYSYTDKASEFVQEASTLQGAVGKQDADDVSIPISHIDDVLDMVDVLVEGSEGLD
EDIGFLLNEDMILLTFPFSALVPAALEARNKLLLGTECEAGESIVAYMTAVLTDILHTQRDPLA
LCLLLQSYDKFEPASLLCCQQLAQFHRYYSLWIPEQAQEALPLQVSGTSGPYTPPSSACFSTLL
QTAYESQTLGDKNVQAKLLAAVPCLPLQHMLRSAKQVLLYLKSTVENFSQLGKSVGPTLLQFLL
GLLKHLVIHSEQLDTQNQQKLEAARAESDLFLDMESVASLELATDKTVEELLVAILKHPTLETW
FLALEQKALPPHTLSPVLVKLLAAQFSAGVLQLLVASSPILHKLGQLGLLAKYSEAITQSVLRE
LRTRTVNSAMTPKTLPQLEALRELHPYMEGVQIREVTLALLGLPEAHLLTQQGTQCPGKERQLS
SLGKTLVQLLTSSHQNRLQSSELLWCAEYVRGLGALLPTLAEQELDTVFLQTLQKDPVLAPVVP
ADLLEYCLVRRTKAALDIASLLLQYSSTHLLKFELWCGQPGVGPSLQEHLDDFFPLIHVYLQHR
MQGSFMRPTEVSSAVTPVLRALWRQVRDRFFHIAGPSKHALHLEALAQLIPFARTKDLRVLMDH
LPNLLRTLSNHKSWIVADSVSAALAESAEELASWRKTLLRSCIQWLAVSFSGREPENENTQEQE
KTMLLRLSELLHAVKEVDPGDWQQFVKTGLKFRYQDLTFLRTLLDATKLLYSPESSGHTKLVQL
SVMHMMLTQHSLFLPTMLTSKEEETPDSPVKETLLDLMSTVVRMCPSVCESSHFAVLLGTYSAT
LSILDQKILLLLRAYEQHSLSLISFRVLLWGPAAVEHHKTCRSLGKSLWQQPSVGDILRLLDPD
RMMQTILHFPQYRRLLHTEDTGEPQVFKDKTARVDLSGLYDPCFLLHLFGELTRPEFVVDCRKF
LDSNALGLTVAALSSYDPQMRAAAYYVLAAYYSHLEGARFREQSQVLYLLDVVRNGIQAPNLRL
PFTVALFIAKAAAQILRPEEHMYWKISKFLLSHENLNMNKLPGFYQFFYSSDFQQKTEQEWVLE
ILRQGIRDKHCYELCSRRGVFHIILSFFSSPLCDEVAQNWILEILQNVAHIPRSAYEVIRDYSL
LTWILHILESRFIETQLLSNVISLLHTLWVTNLGSRAAEERSQLPCQTDCHESEKTLALHMVNE
FLYVLVALTKHLRPTLASTQLMDFFWTLESVLSYRATVIKIFKDMGRFTVNQVTLSTKDVLVLL
HKWSLIERDTKLQGELKAIIEQHQAKDLMKMLKDKHRPLGAARAKGPRGREKRRREREEETAEP
QLEASTLEKCKDLLRATLTHWGPAVPLPGPTQESVGQAIPKSKALGSAHAAVSLVAGWVLRSLA
ERPLSRAEVTRLLDWLKSHILPQPMVVADLLRDSAVKTGIFKLYSRHCNAQGLVGPAQDVACKF
SMVMLQLLVAQGRTPSPFHSVAEALCLDSLNEKDEAKRAPAAFLVSLYIKDIWLGAQQPDTFLA
HIQTVCEASKDMALGESEALVVLCRDVGSSAQSLTHSC

hide sequence

Ensembl Acc Id:

ENSRNOP00000002851 ⟸ ENSRNOT00000002851

RefSeq Acc Id:	XP_038944355 ⟸ XM_039088427
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038944356 ⟸ XM_039088428
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000086072 ⟸ ENSRNOT00000111086

Protein Domains

Nucleolar pre-ribosomal-associated protein 1 C- Nucleolar pre-ribosomal-associated protein 1 N-

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7S4-F1-model_v2	AlphaFold	D4A7S4	1-2278	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698047

Promoter ID:

EPDNEW_R8572

Type:

initiation region

Name:

Urb1_1

Description:

URB1 ribosome biogenesis 1 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	30,977,487 - 30,977,547	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304621	AgrOrtholog
BioCyc Gene	G2FUF-21932	BioCyc
Ensembl Genes	ENSRNOG00000002080	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002851	ENTREZGENE
	ENSRNOT00000002851.8	UniProtKB/TrEMBL
	ENSRNOT00000111086.1	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	NopRA1_C	UniProtKB/TrEMBL
	Npa1	UniProtKB/TrEMBL
	URB1	UniProtKB/TrEMBL
KEGG Report	rno:304104	UniProtKB/TrEMBL
NCBI Gene	304104	ENTREZGENE
PANTHER	NUCLEOLAR PRE-RIBOSOMAL-ASSOCIATED PROTEIN 1	UniProtKB/TrEMBL
	PTHR13500	UniProtKB/TrEMBL
Pfam	NopRA1	UniProtKB/TrEMBL
	Npa1	UniProtKB/TrEMBL
PhenoGen	Urb1	PhenoGen
RatGTEx	ENSRNOG00000002080	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A8I6GDM7	ENTREZGENE, UniProtKB/TrEMBL
	D4A7S4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-08-21	Urb1	URB1 ribosome biogenesis homolog	Urb1	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-16	Urb1	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	RGD1304621	similar to Hypothetical protein KIAA0539	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1304621	similar to Hypothetical protein KIAA0539	RGD1304621_predicted	similar to Hypothetical protein KIAA0539 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1304621_predicted	similar to Hypothetical protein KIAA0539 (predicted)	LOC304104_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304104_predicted	similar to Hypothetical protein KIAA0539 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar