Atf6b (activating transcription factor 6 beta) - Rat Genome Database

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Gene: Atf6b (activating transcription factor 6 beta) Rattus norvegicus
Analyze
Symbol: Atf6b
Name: activating transcription factor 6 beta
RGD ID: 1303317
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to contribute to DNA-binding transcription activator activity, RNA polymerase II-specific. Predicted to be involved in endoplasmic reticulum unfolded protein response; negative regulation of ATF6-mediated unfolded protein response; and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of RNA polymerase II transcription regulator complex and protein-DNA complex. Predicted to be active in nucleus. Orthologous to human ATF6B (activating transcription factor 6 beta); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4-phenylbutyric acid; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cAMP responsive element binding protein-like 1; Crebl1; cyclic AMP-dependent transcription factor ATF-6 beta; MGC112556
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,095,534 - 4,103,534 (-)NCBIGRCr8
mRatBN7.2204,090,921 - 4,098,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,090,921 - 4,098,894 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,791,227 - 4,799,089 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,152,979 - 4,160,842 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,690,037 - 4,697,890 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,414,283 - 4,422,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,414,276 - 4,422,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,493,639 - 6,501,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,192,185 - 4,200,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,192,411 - 4,200,335 (-)NCBI
Celera203,931,428 - 3,939,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8870652   PMID:9837962   PMID:11256944   PMID:12477932   PMID:14973138   PMID:24006456  


Genomics

Comparative Map Data
Atf6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,095,534 - 4,103,534 (-)NCBIGRCr8
mRatBN7.2204,090,921 - 4,098,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,090,921 - 4,098,894 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,791,227 - 4,799,089 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,152,979 - 4,160,842 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,690,037 - 4,697,890 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,414,283 - 4,422,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,414,276 - 4,422,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,493,639 - 6,501,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,192,185 - 4,200,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,192,411 - 4,200,335 (-)NCBI
Celera203,931,428 - 3,939,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
ATF6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,115,264 - 32,128,246 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,115,264 - 32,128,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37632,083,041 - 32,096,023 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,191,016 - 32,203,995 (-)NCBINCBI36Build 36hg18NCBI36
Build 34632,191,024 - 32,203,995NCBI
Celera633,650,086 - 33,663,069 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef631,837,168 - 31,850,138 (-)NCBIHuRef
CHM1_1632,085,255 - 32,098,227 (-)NCBICHM1_1
T2T-CHM13v2.0631,968,456 - 31,981,438 (-)NCBIT2T-CHM13v2.0
Atf6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,866,120 - 34,874,048 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,866,120 - 34,874,048 (+)EnsemblGRCm39 Ensembl
GRCm381734,647,146 - 34,655,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,647,146 - 34,655,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,784,125 - 34,792,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,255,202 - 34,263,128 (+)NCBIMGSCv36mm8
Celera1737,742,351 - 37,750,243 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.22NCBI
Atf6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437582,431 - 591,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437582,083 - 592,026 (-)NCBIChiLan1.0ChiLan1.0
ATF6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,577,837 - 46,590,853 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,539,307 - 42,552,297 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,762,161 - 31,775,136 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,643,124 - 32,655,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,643,124 - 32,655,617 (-)Ensemblpanpan1.1panPan2
ATF6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,515,186 - 1,525,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,515,503 - 1,525,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,649,820 - 1,659,539 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,648,775 - 1,664,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,654,226 - 1,663,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,517,328 - 1,527,049 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,582,585 - 1,592,516 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,649,158 - 1,658,950 (-)NCBIUU_Cfam_GSD_1.0
Atf6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,073,980 - 36,085,314 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,475,863 - 1,491,172 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,476,061 - 1,487,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,153,574 - 24,171,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,153,551 - 24,171,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,974,356 - 27,992,535 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,901,226 - 39,913,702 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,901,226 - 39,914,142 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604432,017,693 - 32,030,453 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,184,261 - 24,194,904 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,185,203 - 24,194,351 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atf6b
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:42
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000000492
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat

Markers in Region
D20Yum61  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,099,411 - 4,099,577 (-)MAPPERmRatBN7.2
Rnor_6.0204,413,628 - 4,413,793NCBIRnor6.0
Rnor_5.0206,492,984 - 6,493,149UniSTSRnor5.0
RGSC_v3.4204,200,675 - 4,200,840UniSTSRGSC3.4
Celera203,930,624 - 3,930,789UniSTS
Cytogenetic Map20p12UniSTS
RH138792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,099,916 - 4,100,062 (-)MAPPERmRatBN7.2
Rnor_6.0204,413,143 - 4,413,288NCBIRnor6.0
Rnor_5.0206,492,499 - 6,492,644UniSTSRnor5.0
RGSC_v3.4204,201,180 - 4,201,325UniSTSRGSC3.4
Celera203,930,139 - 3,930,284UniSTS
RH 3.4 Map2053.23UniSTS
Cytogenetic Map20p12UniSTS
BE115494  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,090,976 - 4,091,188 (-)MAPPERmRatBN7.2
Rnor_6.0204,422,016 - 4,422,227NCBIRnor6.0
Rnor_5.0206,501,372 - 6,501,583UniSTSRnor5.0
RGSC_v3.4204,192,241 - 4,192,452UniSTSRGSC3.4
Celera203,939,012 - 3,939,223UniSTS
RH 3.4 Map2054.03UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:237630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,099,920 - 4,100,134 (-)MAPPERmRatBN7.2
Rnor_6.0204,413,071 - 4,413,284NCBIRnor6.0
Rnor_5.0206,492,427 - 6,492,640UniSTSRnor5.0
RGSC_v3.4204,201,184 - 4,201,397UniSTSRGSC3.4
Celera203,930,067 - 3,930,280UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000000492   ⟹   ENSRNOP00000000492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,090,921 - 4,098,894 (-)Ensembl
Rnor_6.0 Ensembl204,414,276 - 4,422,283 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,418,643 - 4,420,693 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,420,688 - 4,421,918 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,418,636 - 4,420,660 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,420,335 - 4,421,097 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,417,992 - 4,419,806 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119502   ⟹   ENSRNOP00000079997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,090,925 - 4,098,762 (-)Ensembl
RefSeq Acc Id: NM_001002809   ⟹   NP_001002809
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,095,534 - 4,103,385 (-)NCBI
mRatBN7.2204,090,921 - 4,098,772 (-)NCBI
Rnor_6.0204,414,432 - 4,422,283 (+)NCBI
Rnor_5.0206,493,639 - 6,501,639 (+)NCBI
RGSC_v3.4204,192,185 - 4,200,036 (-)RGD
Celera203,931,428 - 3,939,279 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255983   ⟹   XP_006256045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,095,534 - 4,103,534 (-)NCBI
mRatBN7.2204,090,921 - 4,098,920 (-)NCBI
Rnor_6.0204,414,283 - 4,422,283 (+)NCBI
Rnor_5.0206,493,639 - 6,501,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063279359   ⟹   XP_063135429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,095,534 - 4,103,534 (-)NCBI
RefSeq Acc Id: XR_362003
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,096,701 - 4,103,534 (-)NCBI
mRatBN7.2204,090,921 - 4,098,920 (-)NCBI
Rnor_6.0204,414,283 - 4,422,283 (+)NCBI
Rnor_5.0206,493,639 - 6,501,639 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001002809   ⟸   NM_001002809
- UniProtKB: Q4G097 (UniProtKB/TrEMBL),   Q6MG80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256045   ⟸   XM_006255983
- Peptide Label: isoform X2
- UniProtKB: A6KTJ2 (UniProtKB/TrEMBL),   F7ERH6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000492   ⟸   ENSRNOT00000000492
Ensembl Acc Id: ENSRNOP00000079997   ⟸   ENSRNOT00000119502
RefSeq Acc Id: XP_063135429   ⟸   XM_063279359
- Peptide Label: isoform X1
- UniProtKB: A6KTJ2 (UniProtKB/TrEMBL),   F7ERH6 (UniProtKB/TrEMBL)
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4G097-F1-model_v2 AlphaFold Q4G097 1-703 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701350
Promoter ID:EPDNEW_R11873
Type:multiple initiation site
Name:Atf6b_1
Description:activating transcription factor 6 beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,414,418 - 4,414,478EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303317 AgrOrtholog
BioCyc Gene G2FUF-4591 BioCyc
Ensembl Genes ENSRNOG00000000431 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000492.8 UniProtKB/TrEMBL
  ENSRNOT00000119502.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7103893 IMAGE-MGC_LOAD
InterPro ATF_bZIP_TF UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  TF_bZIP UniProtKB/TrEMBL
KEGG Report rno:406169 UniProtKB/TrEMBL
MGC_CLONE MGC:112556 IMAGE-MGC_LOAD
NCBI Gene 406169 ENTREZGENE
PANTHER ATF6, ISOFORM C UniProtKB/TrEMBL
  PTHR46164:SF2 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
PhenoGen Atf6b PhenoGen
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000431 RatGTEx
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A8I5ZPJ5_RAT UniProtKB/TrEMBL
  A6KTJ2 ENTREZGENE, UniProtKB/TrEMBL
  F7ERH6 ENTREZGENE, UniProtKB/TrEMBL
  Q4G097 ENTREZGENE, UniProtKB/TrEMBL
  Q6MG80 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-14 Atf6b  activating transcription factor 6 beta  Crebl1  cAMP responsive element binding protein-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Crebl1        Symbol and Name status set to provisional 70820 PROVISIONAL