Zbtb9 (zinc finger and BTB domain containing 9)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Zbtb9 (zinc finger and BTB domain containing 9) Rattus norvegicus

Analyze

Symbol:

Zbtb9

Name:

zinc finger and BTB domain containing 9

RGD ID:

1303050

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZBTB9 (zinc finger and BTB domain containing 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

3930402F13Rik; zinc finger and BTB domain-containing protein 9

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	5,057,433 - 5,060,459 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	5,057,434 - 5,062,819 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,782,966 - 5,785,968 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	20	5,144,703 - 5,147,705 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	20	5,622,887 - 5,626,003 (+)	NCBI	Rnor_WKY
Rnor_6.0	20	5,566,517 - 5,569,535 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,566,531 - 5,569,533 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,625,739 - 7,628,741 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	5,212,213 - 5,215,215 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	5,212,439 - 5,215,442 (+)	NCBI
Celera	20	6,639,663 - 6,642,665 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 5 (ISO)

genetic disease (ISO)

JMP syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

atrazine (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

caffeine (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

leflunomide (ISO)

paracetamol (EXP)

pirinixic acid (ISO)

Soman (EXP)

temozolomide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

identical protein binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:31904090

Genomics

Comparative Map Data

Zbtb9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	5,057,433 - 5,060,459 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	5,057,434 - 5,062,819 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,782,966 - 5,785,968 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	20	5,144,703 - 5,147,705 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	20	5,622,887 - 5,626,003 (+)	NCBI	Rnor_WKY
Rnor_6.0	20	5,566,517 - 5,569,535 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,566,531 - 5,569,533 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,625,739 - 7,628,741 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	5,212,213 - 5,215,215 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	5,212,439 - 5,215,442 (+)	NCBI
Celera	20	6,639,663 - 6,642,665 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

ZBTB9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	33,453,083 - 33,457,544 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	33,453,970 - 33,457,544 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	33,422,353 - 33,425,321 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	33,530,334 - 33,533,299 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	33,530,333 - 33,533,296	NCBI
Celera	6	34,976,782 - 34,979,747 (+)	NCBI		Celera
Cytogenetic Map	6	p21.32	NCBI
HuRef	6	33,164,113 - 33,167,078 (+)	NCBI		HuRef
CHM1_1	6	33,424,248 - 33,427,213 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	33,275,939 - 33,278,907 (+)	NCBI		T2T-CHM13v2.0

Zbtb9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	27,192,153 - 27,195,177 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	27,192,141 - 27,227,350 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	17	27,192,191 - 27,255,352 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	26,973,179 - 26,976,203 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	26,973,217 - 27,036,378 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	17	26,973,167 - 27,008,376 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	27,110,124 - 27,113,148 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	26,700,768 - 26,703,792 (+)	NCBI		MGSCv36	mm8
Celera	17	27,509,833 - 27,512,857 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI

Zbtb9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	1,982,248 - 1,983,672 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	1,981,817 - 1,986,142 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	34,144,776 - 34,148,349 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	34,145,906 - 34,147,327 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	33,033,213 - 33,036,926 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ZBTB9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	2,863,709 - 2,866,565 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	2,864,105 - 2,865,604 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	2,944,513 - 2,947,331 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	3,195,369 - 3,198,187 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	3,195,812 - 3,197,230 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	2,862,452 - 2,865,270 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	2,943,541 - 2,946,359 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	3,041,692 - 3,044,510 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	38,514,658 - 38,517,615 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	25,443,738 - 25,445,177 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936476	25,442,652 - 25,445,682 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	29,754,725 - 29,757,565 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	29,754,729 - 29,757,568 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	34,337,563 - 34,340,403 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	38,608,905 - 38,611,914 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	38,609,944 - 38,611,365 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	33,302,915 - 33,306,249 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	23,364,916 - 23,366,349 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	23,362,175 - 23,366,867 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zbtb9
9 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	70
Count of miRNA genes:	50
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000000574
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1527959	5304575	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
61474	Eae1	Experimental allergic encephalomyelitis QTL 1	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	20	4606607	6691706	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat

Markers in Region

RH128554

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	5,060,194 - 5,060,374 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	5,569,269 - 5,569,448	NCBI	Rnor6.0
Rnor_5.0	20	7,628,477 - 7,628,656	UniSTS	Rnor5.0
RGSC_v3.4	20	5,214,951 - 5,215,130	UniSTS	RGSC3.4
Celera	20	6,642,401 - 6,642,580	UniSTS
RH 3.4 Map	20	54.83	UniSTS
Cytogenetic Map	20	p12	UniSTS

AI008258

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	5,056,502 - 5,056,626 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	5,565,577 - 5,565,700	NCBI	Rnor6.0
Rnor_5.0	20	7,624,785 - 7,624,908	UniSTS	Rnor5.0
RGSC_v3.4	20	5,211,259 - 5,211,382	UniSTS	RGSC3.4
Celera	20	6,638,709 - 6,638,832	UniSTS
RH 3.4 Map	20	54.63	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	4	10	4	14	4			53	20	31	9
Low	1	39	47	37	5	37	8	11	21	15	10	2	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_213564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX883042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000000574 ⟹ ENSRNOP00000000574

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	5,057,434 - 5,062,819 (+)	Ensembl
Rnor_6.0 Ensembl	20	5,566,531 - 5,569,533 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092469 ⟹ ENSRNOP00000075867

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	5,057,450 - 5,061,835 (+)	Ensembl
Rnor_6.0 Ensembl	20	5,566,556 - 5,568,807 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115758 ⟹ ENSRNOP00000088894

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	5,057,443 - 5,061,354 (+)	Ensembl

RefSeq Acc Id:

NM_213564 ⟹ NP_998729

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	5,057,457 - 5,060,459 (+)	NCBI
Rnor_6.0	20	5,566,531 - 5,569,533 (+)	NCBI
Rnor_5.0	20	7,625,739 - 7,628,741 (+)	NCBI
RGSC_v3.4	20	5,212,213 - 5,215,215 (+)	RGD
Celera	20	6,639,663 - 6,642,665 (+)	RGD

Sequence:

show sequence

GGCGGAACTGCGGCAGCTTCCGGCCGGCCAGGCGCAGTGGATGCGAGGAGCTCCGACGCGGTCG
TGCGTGCGGTGGGGGCGTGTCGGTGGGAAGTCGTGGGGCCGGAGCTCGCGGAGCCGGCCTGTCC
GAGCAAGGTTGACCCTAGTCTCTTTCCTCTGCAGTCTTCATCCACGGGTTTTATTTCTCCCTCC
GAGGTAGCCATGGATGCTTCGACTCCTTTGCCTCCCGCACCCTCTTCTCCGAGGTGTAACCCAG
CCCCACAGACAATCCACATTGATTTCCCTCATCATAGCTCTTCGCTGCTGGAATCCCTGAACCG
CCATAGGCTGGAGGGAAAGTTCTGTGATGTATCCCTCCTGGTTCAGGGCAGGGAACTGAGGGCT
CACAAAGCAGTGTTGGCTGCTGCCTCTCCTTACTTCCATGACAAGCTGCTATTGGGGGATGCGC
CCCGACTCACTTTACCGAATGTCATCGAGGCAGATGCGTTCGAGGGACTGCTTCAGCTCATCTA
TTCAGGAAGCCTCCACCTGCCATTGGATGCTCTTCCTGCCCATCTCCTCGTGGCCAGTGGCCTT
CAGATGTGGCAGGTAGTAGATCGGTGCTCAGAGATTCTTCGAGAGCTAGAAACGTCCAGTGGAA
TTTCATCTGGTGGAGGAGCCTCCAGCCTCACACTTCTTTCCACAACATCTGCAGGAGGCTGGTG
CATTCGCTCTTCCCCTTTCCAGAACCCAGGGCGGTCCTCCGCTTCCACAGAGAATTCTGCTGCC
CCTGAGAGCCCCAGTGGAGGGGAGGGGGGTGAACTAGAAGGAATGTTACAGATTCAGGTCAAAG
TAGAGGAGGAAGAGGAGCAGAGGTCAGCAGCCCCACCCTTTCAGACCCCTCAGCCTGAGAGAGT
GTCAGGAGCGGTTTCCCAGGCTTGCGGATCCCACCCGTTGCCTACATCGACTCTTCCCAGCAAA
CCTTCAGAGGATGAGAACTCAACACTTGATCCTCCTGCCCCTCCCGTACAAACTTCCCAAATCT
TATACGTTAACCAGGAAAACGTCGAGTGTAAGGAGGAGACATCAGGAGGCAGGACTCTGTCTGG
AGGAGCAAAGGAAAAGACCAAAGTACTGCCTGGAGAGAACTCTGAGGAAAATGGGGAGCTAAGA
TACTTGCTGTCCTCAGGAGGAGGGGAGACGTCTGGGGCAGGAGACCCATCCTGGAAACCAGTGG
ATCTCCATGGGAATGAAATCTTGTCAGGGGGCGGAGGACCCGGAGGAACAGGGCAGGCTATGCA
CGGGCCTGTGAAGCTAGGAGGGACACCCCCTGCAGATGGAAAGTGCTTTGCTTGCTTGTGTGGA
AAACGGTTTGCAGTCAAGCCGAAACGAGACCGACACATCATGTTGACCTTCAGCCTTCGTCCCT
TCGGCTGCGGCATCTGTAATAAACGCTTCAAGCTGAAGCATCATCTGACAGAGCACATGAAGAC
CCACGCCAGAGCTCTGCACGCGTGTCCCCATTGTGGCCGCCGGTTCCGGGTCCAGGCTTTCTTC
CTTCGACACCGGGACTTATGCAAGGGCCAGGGCTGGCCCACTTACCACTGGACTTACAAATGAC
TACCGATGCTCTGTAGTGATTTCTAGGACAAGATAGCCACTGCTGCTGACGGACTTACCTTCCA
CCACCTCAGTCCTGGATCGTGTGGTCCTTCCAAGAGATTATATATGTCATGTTGTGAACCCCTT
ACTCTTGGGGATGGGCCTCACCCTGGTATATTTGGAAGTCCTGTAGGAAGGTCATGCTTCTGAT
CACTCAACCGGAATGGCCCTTTTTGTATTGATAGCCAGTGAAGGAACTGCTGACCTCAGGTTAT
ATTAGCAAGAGAAGAGATGGAGCAAAATGACCCAGTAACTCTATCCTCATCTTCATGAGGAGGT
GAGGGAGCTGGTCTCCAACTAGGAAAACATTTGATTCAGAGCTCAAGTAATTGTCAGACTCAGC
TCTGAGCGGCCTCTGCCTCACTGTCAACGGTATCCCGACTCTGTACTTTCTGTCATTTCTTTCC
AGAAGCTTTTTAAAGTTGTACTTTTCTTTTCTCACCAGGAGACACCTTTCCCAAATATCCTTTT
AAAAATGACTGGAGAGGTGGCTCGGGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCC
AGTAGCCGCATGGTGGCTCACAACCATCTGTAATGGGATCTGACGCCCTCTTCTGGCCTGCAGG
CGTACATGCAGACAGAGCATTCATACATTAAAAAAAAAAAGTACTTGAACATGAAGCAAGTGTC
CTGCACACATTTAATCACAGCACATGGGAGGCAGAGGCAGGTGGATCTCTTCAAGTTCAAGGCC
AGCCAGGGCTGCGCTCGGCGAGACCCTATCTTGAGGGGGATAAATAGTACTCGAGCACTTTAGC
AAACTGAGCATTTCACAGGTTACTCTGAAAGCCCATCGCAGAGGGTCCTCCCTCAGAGGCCTTC
ACCTTGTCTTTCACTACCACTAATCACAATGACAGATGTGACCCAGGAACTCAAGAGGTGGCAG
CTGGCCTACAGCGCTCCCAGGGTGGCATTTCCCCCACTTAGAGGATCTCAGGGTTGAACCCACA
CATGGTGAGGATCTGCAGAGGAGCCACGGTGGGACCATGCTGCTCTCTTTTCCACCCCACCGAC
ATCAGTAGAAACAACACCTTTGTAGAGGTAGAGGGGTAGATAGAATGGAGGTGAAGGGGAATTT
AAATTATAATAAACTGCCCCGCAATCTAAACTGA

hide sequence

RefSeq Acc Id:

XM_006256121 ⟹ XP_006256183

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	5,057,434 - 5,060,459 (+)	NCBI
Rnor_6.0	20	5,566,517 - 5,569,535 (+)	NCBI
Rnor_5.0	20	7,625,739 - 7,628,741 (+)	NCBI

Sequence:

show sequence

CTGCAGTGGCGTCCGGCGGAACTGCGGCAGCTTCCGGCCGGCCAGGCGCAGTGGATGCGAGGAG
CTCCGACGCGGTCGTGCGTGCGGTGGGGGCGTGTCGGTGGGAAGTCGTGGGGCCGGAGCTCGCG
GAGCCGGCCTGTCCGAGCAAGTCTTCATCCACGGGTTTTATTTCTCCCTCCGAGGTAGCCATGG
ATGCTTCGACTCCTTTGCCTCCCGCACCCTCTTCTCCGAGGTGTAACCCAGCCCCACAGACAAT
CCACATTGATTTCCCTCATCATAGCTCTTCGCTGCTGGAATCCCTGAACCGCCATAGGCTGGAG
GGAAAGTTCTGTGATGTATCCCTCCTGGTTCAGGGCAGGGAACTGAGGGCTCACAAAGCAGTGT
TGGCTGCTGCCTCTCCTTACTTCCATGACAAGCTGCTATTGGGGGATGCGCCCCGACTCACTTT
ACCGAATGTCATCGAGGCAGATGCGTTCGAGGGACTGCTTCAGCTCATCTATTCAGGAAGCCTC
CACCTGCCATTGGATGCTCTTCCTGCCCATCTCCTCGTGGCCAGTGGCCTTCAGATGTGGCAGG
TAGTAGATCGGTGCTCAGAGATTCTTCGAGAGCTAGAAACGTCCAGTGGAATTTCATCTGGTGG
AGGAGCCTCCAGCCTCACACTTCTTTCCACAACATCTGCAGGAGGCTGGTGCATTCGCTCTTCC
CCTTTCCAGAACCCAGGGCGGTCCTCCGCTTCCACAGAGAATTCTGCTGCCCCTGAGAGCCCCA
GTGGAGGGGAGGGGGGTGAACTAGAAGGAATGTTACAGATTCAGGTCAAAGTAGAGGAGGAAGA
GGAGCAGAGGTCAGCAGCCCCACCCTTTCAGACCCCTCAGCCTGAGAGAGTGTCAGGAGCGGTT
TCCCAGGCTTGCGGATCCCACCCGTTGCCTACATCGACTCTTCCCAGCAAACCTTCAGAGGATG
AGAACTCAACACTTGATCCTCCTGCCCCTCCCGTACAAACTTCCCAAATCTTATACGTTAACCA
GGAAAACGTCGAGTGTAAGGAGGAGACATCAGGAGGCAGGACTCTGTCTGGAGGAGCAAAGGAA
AAGACCAAAGTACTGCCTGGAGAGAACTCTGAGGAAAATGGGGAGCTAAGATACTTGCTGTCCT
CAGGAGGAGGGGAGACGTCTGGGGCAGGAGACCCATCCTGGAAACCAGTGGATCTCCATGGGAA
TGAAATCTTGTCAGGGGGCGGAGGACCCGGAGGAACAGGGCAGGCTATGCACGGGCCTGTGAAG
CTAGGAGGGACACCCCCTGCAGATGGAAAGTGCTTTGCTTGCTTGTGTGGAAAACGGTTTGCAG
TCAAGCCGAAACGAGACCGACACATCATGTTGACCTTCAGCCTTCGTCCCTTCGGCTGCGGCAT
CTGTAATAAACGCTTCAAGCTGAAGCATCATCTGACAGAGCACATGAAGACCCACGCCAGAGCT
CTGCACGCGTGTCCCCATTGTGGCCGCCGGTTCCGGGTCCAGGCTTTCTTCCTTCGACACCGGG
ACTTATGCAAGGGCCAGGGCTGGCCCACTTACCACTGGACTTACAAATGACTACCGATGCTCTG
TAGTGATTTCTAGGACAAGATAGCCACTGCTGCTGACGGACTTACCTTCCACCACCTCAGTCCT
GGATCGTGTGGTCCTTCCAAGAGATTATATATGTCATGTTGTGAACCCCTTACTCTTGGGGATG
GGCCTCACCCTGGTATATTTGGAAGTCCTGTAGGAAGGTCATGCTTCTGATCACTCAACCGGAA
TGGCCCTTTTTGTATTGATAGCCAGTGAAGGAACTGCTGACCTCAGGTTATATTAGCAAGAGAA
GAGATGGAGCAAAATGACCCAGTAACTCTATCCTCATCTTCATGAGGAGGTGAGGGAGCTGGTC
TCCAACTAGGAAAACATTTGATTCAGAGCTCAAGTAATTGTCAGACTCAGCTCTGAGCGGCCTC
TGCCTCACTGTCAACGGTATCCCGACTCTGTACTTTCTGTCATTTCTTTCCAGAAGCTTTTTAA
AGTTGTACTTTTCTTTTCTCACCAGGAGACACCTTTCCCAAATATCCTTTTAAAAATGACTGGA
GAGGTGGCTCGGGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGTAGCCGCATGG
TGGCTCACAACCATCTGTAATGGGATCTGACGCCCTCTTCTGGCCTGCAGGCGTACATGCAGAC
AGAGCATTCATACATTAAAAAAAAAAAGTACTTGAACATGAAGCAAGTGTCCTGCACACATTTA
ATCACAGCACATGGGAGGCAGAGGCAGGTGGATCTCTTCAAGTTCAAGGCCAGCCAGGGCTGCG
CTCGGCGAGACCCTATCTTGAGGGGGATAAATAGTACTCGAGCACTTTAGCAAACTGAGCATTT
CACAGGTTACTCTGAAAGCCCATCGCAGAGGGTCCTCCCTCAGAGGCCTTCACCTTGTCTTTCA
CTACCACTAATCACAATGACAGATGTGACCCAGGAACTCAAGAGGTGGCAGCTGGCCTACAGCG
CTCCCAGGGTGGCATTTCCCCCACTTAGAGGATCTCAGGGTTGAACCCACACATGGTGAGGATC
TGCAGAGGAGCCACGGTGGGACCATGCTGCTCTCTTTTCCACCCCACCGACATCAGTAGAAACA
ACACCTTTGTAGAGGTAGAGGGGTAGATAGAATGGAGGTGAAGGGGAATTTAAATTATAATAAA
CTGCCCCGCAATCTAAACTGACA

hide sequence

RefSeq Acc Id:

XM_006256122 ⟹ XP_006256184

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	5,057,454 - 5,060,459 (+)	NCBI
Rnor_6.0	20	5,566,672 - 5,569,535 (+)	NCBI
Rnor_5.0	20	7,625,739 - 7,628,741 (+)	NCBI

Sequence:

show sequence

AGGGGCGAGCGGCGGCGGAGGGCGACTGAGCCAGCGAGGCGGGGCGCCATCCCTTCCCTACTTG
GCTTCCGCTGGGCCTGGAAGTGAAAACCCTGTCTTCATCCACGGGTTTTATTTCTCCCTCCGAG
GTAGCCATGGATGCTTCGACTCCTTTGCCTCCCGCACCCTCTTCTCCGAGGTGTAACCCAGCCC
CACAGACAATCCACATTGATTTCCCTCATCATAGCTCTTCGCTGCTGGAATCCCTGAACCGCCA
TAGGCTGGAGGGAAAGTTCTGTGATGTATCCCTCCTGGTTCAGGGCAGGGAACTGAGGGCTCAC
AAAGCAGTGTTGGCTGCTGCCTCTCCTTACTTCCATGACAAGCTGCTATTGGGGGATGCGCCCC
GACTCACTTTACCGAATGTCATCGAGGCAGATGCGTTCGAGGGACTGCTTCAGCTCATCTATTC
AGGAAGCCTCCACCTGCCATTGGATGCTCTTCCTGCCCATCTCCTCGTGGCCAGTGGCCTTCAG
ATGTGGCAGGTAGTAGATCGGTGCTCAGAGATTCTTCGAGAGCTAGAAACGTCCAGTGGAATTT
CATCTGGTGGAGGAGCCTCCAGCCTCACACTTCTTTCCACAACATCTGCAGGAGGCTGGTGCAT
TCGCTCTTCCCCTTTCCAGAACCCAGGGCGGTCCTCCGCTTCCACAGAGAATTCTGCTGCCCCT
GAGAGCCCCAGTGGAGGGGAGGGGGGTGAACTAGAAGGAATGTTACAGATTCAGGTCAAAGTAG
AGGAGGAAGAGGAGCAGAGGTCAGCAGCCCCACCCTTTCAGACCCCTCAGCCTGAGAGAGTGTC
AGGAGCGGTTTCCCAGGCTTGCGGATCCCACCCGTTGCCTACATCGACTCTTCCCAGCAAACCT
TCAGAGGATGAGAACTCAACACTTGATCCTCCTGCCCCTCCCGTACAAACTTCCCAAATCTTAT
ACGTTAACCAGGAAAACGTCGAGTGTAAGGAGGAGACATCAGGAGGCAGGACTCTGTCTGGAGG
AGCAAAGGAAAAGACCAAAGTACTGCCTGGAGAGAACTCTGAGGAAAATGGGGAGCTAAGATAC
TTGCTGTCCTCAGGAGGAGGGGAGACGTCTGGGGCAGGAGACCCATCCTGGAAACCAGTGGATC
TCCATGGGAATGAAATCTTGTCAGGGGGCGGAGGACCCGGAGGAACAGGGCAGGCTATGCACGG
GCCTGTGAAGCTAGGAGGGACACCCCCTGCAGATGGAAAGTGCTTTGCTTGCTTGTGTGGAAAA
CGGTTTGCAGTCAAGCCGAAACGAGACCGACACATCATGTTGACCTTCAGCCTTCGTCCCTTCG
GCTGCGGCATCTGTAATAAACGCTTCAAGCTGAAGCATCATCTGACAGAGCACATGAAGACCCA
CGCCAGAGCTCTGCACGCGTGTCCCCATTGTGGCCGCCGGTTCCGGGTCCAGGCTTTCTTCCTT
CGACACCGGGACTTATGCAAGGGCCAGGGCTGGCCCACTTACCACTGGACTTACAAATGACTAC
CGATGCTCTGTAGTGATTTCTAGGACAAGATAGCCACTGCTGCTGACGGACTTACCTTCCACCA
CCTCAGTCCTGGATCGTGTGGTCCTTCCAAGAGATTATATATGTCATGTTGTGAACCCCTTACT
CTTGGGGATGGGCCTCACCCTGGTATATTTGGAAGTCCTGTAGGAAGGTCATGCTTCTGATCAC
TCAACCGGAATGGCCCTTTTTGTATTGATAGCCAGTGAAGGAACTGCTGACCTCAGGTTATATT
AGCAAGAGAAGAGATGGAGCAAAATGACCCAGTAACTCTATCCTCATCTTCATGAGGAGGTGAG
GGAGCTGGTCTCCAACTAGGAAAACATTTGATTCAGAGCTCAAGTAATTGTCAGACTCAGCTCT
GAGCGGCCTCTGCCTCACTGTCAACGGTATCCCGACTCTGTACTTTCTGTCATTTCTTTCCAGA
AGCTTTTTAAAGTTGTACTTTTCTTTTCTCACCAGGAGACACCTTTCCCAAATATCCTTTTAAA
AATGACTGGAGAGGTGGCTCGGGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGT
AGCCGCATGGTGGCTCACAACCATCTGTAATGGGATCTGACGCCCTCTTCTGGCCTGCAGGCGT
ACATGCAGACAGAGCATTCATACATTAAAAAAAAAAAGTACTTGAACATGAAGCAAGTGTCCTG
CACACATTTAATCACAGCACATGGGAGGCAGAGGCAGGTGGATCTCTTCAAGTTCAAGGCCAGC
CAGGGCTGCGCTCGGCGAGACCCTATCTTGAGGGGGATAAATAGTACTCGAGCACTTTAGCAAA
CTGAGCATTTCACAGGTTACTCTGAAAGCCCATCGCAGAGGGTCCTCCCTCAGAGGCCTTCACC
TTGTCTTTCACTACCACTAATCACAATGACAGATGTGACCCAGGAACTCAAGAGGTGGCAGCTG
GCCTACAGCGCTCCCAGGGTGGCATTTCCCCCACTTAGAGGATCTCAGGGTTGAACCCACACAT
GGTGAGGATCTGCAGAGGAGCCACGGTGGGACCATGCTGCTCTCTTTTCCACCCCACCGACATC
AGTAGAAACAACACCTTTGTAGAGGTAGAGGGGTAGATAGAATGGAGGTGAAGGGGAATTTAAA
TTATAATAAACTGCCCCGCAATCTAAACTGACA

hide sequence

RefSeq Acc Id:

XM_017601590 ⟹ XP_017457079

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	5,057,433 - 5,060,459 (+)	NCBI
Rnor_6.0	20	5,566,517 - 5,569,535 (+)	NCBI

Sequence:

show sequence

CTGCAGTGGCGTCCGGCGGAACTGCGGCAGCTTCCGGCCGGCCAGGCGCAGTGGATGCGAGGAG
CTCCGACGCGGTCGTGCGTGCGGTGGGGGCGTGTCGGTGGGAAGTCGTGGGGCCGGAGCTCGCG
GAGCCGGCCTGTCCGAGCAAGCCATGGATGCTTCGACTCCTTTGCCTCCCGCACCCTCTTCTCC
GAGGTGTAACCCAGCCCCACAGACAATCCACATTGATTTCCCTCATCATAGCTCTTCGCTGCTG
GAATCCCTGAACCGCCATAGGCTGGAGGGAAAGTTCTGTGATGTATCCCTCCTGGTTCAGGGCA
GGGAACTGAGGGCTCACAAAGCAGTGTTGGCTGCTGCCTCTCCTTACTTCCATGACAAGCTGCT
ATTGGGGGATGCGCCCCGACTCACTTTACCGAATGTCATCGAGGCAGATGCGTTCGAGGGACTG
CTTCAGCTCATCTATTCAGGAAGCCTCCACCTGCCATTGGATGCTCTTCCTGCCCATCTCCTCG
TGGCCAGTGGCCTTCAGATGTGGCAGGTAGTAGATCGGTGCTCAGAGATTCTTCGAGAGCTAGA
AACGTCCAGTGGAATTTCATCTGGTGGAGGAGCCTCCAGCCTCACACTTCTTTCCACAACATCT
GCAGGAGGCTGGTGCATTCGCTCTTCCCCTTTCCAGAACCCAGGGCGGTCCTCCGCTTCCACAG
AGAATTCTGCTGCCCCTGAGAGCCCCAGTGGAGGGGAGGGGGGTGAACTAGAAGGAATGTTACA
GATTCAGGTCAAAGTAGAGGAGGAAGAGGAGCAGAGGTCAGCAGCCCCACCCTTTCAGACCCCT
CAGCCTGAGAGAGTGTCAGGAGCGGTTTCCCAGGCTTGCGGATCCCACCCGTTGCCTACATCGA
CTCTTCCCAGCAAACCTTCAGAGGATGAGAACTCAACACTTGATCCTCCTGCCCCTCCCGTACA
AACTTCCCAAATCTTATACGTTAACCAGGAAAACGTCGAGTGTAAGGAGGAGACATCAGGAGGC
AGGACTCTGTCTGGAGGAGCAAAGGAAAAGACCAAAGTACTGCCTGGAGAGAACTCTGAGGAAA
ATGGGGAGCTAAGATACTTGCTGTCCTCAGGAGGAGGGGAGACGTCTGGGGCAGGAGACCCATC
CTGGAAACCAGTGGATCTCCATGGGAATGAAATCTTGTCAGGGGGCGGAGGACCCGGAGGAACA
GGGCAGGCTATGCACGGGCCTGTGAAGCTAGGAGGGACACCCCCTGCAGATGGAAAGTGCTTTG
CTTGCTTGTGTGGAAAACGGTTTGCAGTCAAGCCGAAACGAGACCGACACATCATGTTGACCTT
CAGCCTTCGTCCCTTCGGCTGCGGCATCTGTAATAAACGCTTCAAGCTGAAGCATCATCTGACA
GAGCACATGAAGACCCACGCCAGAGCTCTGCACGCGTGTCCCCATTGTGGCCGCCGGTTCCGGG
TCCAGGCTTTCTTCCTTCGACACCGGGACTTATGCAAGGGCCAGGGCTGGCCCACTTACCACTG
GACTTACAAATGACTACCGATGCTCTGTAGTGATTTCTAGGACAAGATAGCCACTGCTGCTGAC
GGACTTACCTTCCACCACCTCAGTCCTGGATCGTGTGGTCCTTCCAAGAGATTATATATGTCAT
GTTGTGAACCCCTTACTCTTGGGGATGGGCCTCACCCTGGTATATTTGGAAGTCCTGTAGGAAG
GTCATGCTTCTGATCACTCAACCGGAATGGCCCTTTTTGTATTGATAGCCAGTGAAGGAACTGC
TGACCTCAGGTTATATTAGCAAGAGAAGAGATGGAGCAAAATGACCCAGTAACTCTATCCTCAT
CTTCATGAGGAGGTGAGGGAGCTGGTCTCCAACTAGGAAAACATTTGATTCAGAGCTCAAGTAA
TTGTCAGACTCAGCTCTGAGCGGCCTCTGCCTCACTGTCAACGGTATCCCGACTCTGTACTTTC
TGTCATTTCTTTCCAGAAGCTTTTTAAAGTTGTACTTTTCTTTTCTCACCAGGAGACACCTTTC
CCAAATATCCTTTTAAAAATGACTGGAGAGGTGGCTCGGGCACTGACTGCTCTTCCAGAGGTCC
TGAGTTCAAATCCCAGTAGCCGCATGGTGGCTCACAACCATCTGTAATGGGATCTGACGCCCTC
TTCTGGCCTGCAGGCGTACATGCAGACAGAGCATTCATACATTAAAAAAAAAAAGTACTTGAAC
ATGAAGCAAGTGTCCTGCACACATTTAATCACAGCACATGGGAGGCAGAGGCAGGTGGATCTCT
TCAAGTTCAAGGCCAGCCAGGGCTGCGCTCGGCGAGACCCTATCTTGAGGGGGATAAATAGTAC
TCGAGCACTTTAGCAAACTGAGCATTTCACAGGTTACTCTGAAAGCCCATCGCAGAGGGTCCTC
CCTCAGAGGCCTTCACCTTGTCTTTCACTACCACTAATCACAATGACAGATGTGACCCAGGAAC
TCAAGAGGTGGCAGCTGGCCTACAGCGCTCCCAGGGTGGCATTTCCCCCACTTAGAGGATCTCA
GGGTTGAACCCACACATGGTGAGGATCTGCAGAGGAGCCACGGTGGGACCATGCTGCTCTCTTT
TCCACCCCACCGACATCAGTAGAAACAACACCTTTGTAGAGGTAGAGGGGTAGATAGAATGGAG
GTGAAGGGGAATTTAAATTATAATAAACTGCCCCGCAATCTAAACTGACA

hide sequence

RefSeq Acc Id:

XM_039098512 ⟹ XP_038954440

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	5,057,676 - 5,060,459 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_998729	(Get FASTA)	NCBI Sequence Viewer
	XP_006256183	(Get FASTA)	NCBI Sequence Viewer
	XP_006256184	(Get FASTA)	NCBI Sequence Viewer
	XP_017457079	(Get FASTA)	NCBI Sequence Viewer
	XP_038954440	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00650	(Get FASTA)	NCBI Sequence Viewer
	CAE83914	(Get FASTA)	NCBI Sequence Viewer
	EDL96870	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_998729 ⟸ NM_213564

- UniProtKB:

Q6MGD2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDASTPLPPAPSSPRCNPAPQTIHIDFPHHSSSLLESLNRHRLEGKFCDVSLLVQGRELRAHKA
VLAAASPYFHDKLLLGDAPRLTLPNVIEADAFEGLLQLIYSGSLHLPLDALPAHLLVASGLQMW
QVVDRCSEILRELETSSGISSGGGASSLTLLSTTSAGGWCIRSSPFQNPGRSSASTENSAAPES
PSGGEGGELEGMLQIQVKVEEEEEQRSAAPPFQTPQPERVSGAVSQACGSHPLPTSTLPSKPSE
DENSTLDPPAPPVQTSQILYVNQENVECKEETSGGRTLSGGAKEKTKVLPGENSEENGELRYLL
SSGGGETSGAGDPSWKPVDLHGNEILSGGGGPGGTGQAMHGPVKLGGTPPADGKCFACLCGKRF
AVKPKRDRHIMLTFSLRPFGCGICNKRFKLKHHLTEHMKTHARALHACPHCGRRFRVQAFFLRH
RDLCKGQGWPTYHWTYK

hide sequence

RefSeq Acc Id:	XP_006256183 ⟸ XM_006256121
- Peptide Label:	isoform X1
- UniProtKB:	Q6MGD2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDASTPLPPAPSSPRCNPAPQTIHIDFPHHSSSLLESLNRHRLEGKFCDVSLLVQGRELRAHKA VLAAASPYFHDKLLLGDAPRLTLPNVIEADAFEGLLQLIYSGSLHLPLDALPAHLLVASGLQMW QVVDRCSEILRELETSSGISSGGGASSLTLLSTTSAGGWCIRSSPFQNPGRSSASTENSAAPES PSGGEGGELEGMLQIQVKVEEEEEQRSAAPPFQTPQPERVSGAVSQACGSHPLPTSTLPSKPSE DENSTLDPPAPPVQTSQILYVNQENVECKEETSGGRTLSGGAKEKTKVLPGENSEENGELRYLL SSGGGETSGAGDPSWKPVDLHGNEILSGGGGPGGTGQAMHGPVKLGGTPPADGKCFACLCGKRF AVKPKRDRHIMLTFSLRPFGCGICNKRFKLKHHLTEHMKTHARALHACPHCGRRFRVQAFFLRH RDLCKGQGWPTYHWTYK hide sequence

RefSeq Acc Id:	XP_006256184 ⟸ XM_006256122
- Peptide Label:	isoform X1
- UniProtKB:	Q6MGD2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDASTPLPPAPSSPRCNPAPQTIHIDFPHHSSSLLESLNRHRLEGKFCDVSLLVQGRELRAHKA VLAAASPYFHDKLLLGDAPRLTLPNVIEADAFEGLLQLIYSGSLHLPLDALPAHLLVASGLQMW QVVDRCSEILRELETSSGISSGGGASSLTLLSTTSAGGWCIRSSPFQNPGRSSASTENSAAPES PSGGEGGELEGMLQIQVKVEEEEEQRSAAPPFQTPQPERVSGAVSQACGSHPLPTSTLPSKPSE DENSTLDPPAPPVQTSQILYVNQENVECKEETSGGRTLSGGAKEKTKVLPGENSEENGELRYLL SSGGGETSGAGDPSWKPVDLHGNEILSGGGGPGGTGQAMHGPVKLGGTPPADGKCFACLCGKRF AVKPKRDRHIMLTFSLRPFGCGICNKRFKLKHHLTEHMKTHARALHACPHCGRRFRVQAFFLRH RDLCKGQGWPTYHWTYK hide sequence

RefSeq Acc Id:	XP_017457079 ⟸ XM_017601590
- Peptide Label:	isoform X1
- UniProtKB:	Q6MGD2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDASTPLPPAPSSPRCNPAPQTIHIDFPHHSSSLLESLNRHRLEGKFCDVSLLVQGRELRAHKA VLAAASPYFHDKLLLGDAPRLTLPNVIEADAFEGLLQLIYSGSLHLPLDALPAHLLVASGLQMW QVVDRCSEILRELETSSGISSGGGASSLTLLSTTSAGGWCIRSSPFQNPGRSSASTENSAAPES PSGGEGGELEGMLQIQVKVEEEEEQRSAAPPFQTPQPERVSGAVSQACGSHPLPTSTLPSKPSE DENSTLDPPAPPVQTSQILYVNQENVECKEETSGGRTLSGGAKEKTKVLPGENSEENGELRYLL SSGGGETSGAGDPSWKPVDLHGNEILSGGGGPGGTGQAMHGPVKLGGTPPADGKCFACLCGKRF AVKPKRDRHIMLTFSLRPFGCGICNKRFKLKHHLTEHMKTHARALHACPHCGRRFRVQAFFLRH RDLCKGQGWPTYHWTYK hide sequence

RefSeq Acc Id:

ENSRNOP00000075867 ⟸ ENSRNOT00000092469

RefSeq Acc Id:

ENSRNOP00000000574 ⟸ ENSRNOT00000000574

RefSeq Acc Id:	XP_038954440 ⟸ XM_039098512
- Peptide Label:	isoform X1
- UniProtKB:	Q6MGD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000088894 ⟸ ENSRNOT00000115758

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6MGD2-F1-model_v2	AlphaFold	Q6MGD2	1-465	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701425

Promoter ID:

EPDNEW_R11947

Type:

multiple initiation site

Name:

Zbtb9_1

Description:

zinc finger and BTB domain containing 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	5,566,550 - 5,566,610	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303050	AgrOrtholog
BioCyc Gene	G2FUF-4502	BioCyc
Ensembl Genes	ENSRNOG00000026799	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000000574	ENTREZGENE
	ENSRNOP00000000574.4	UniProtKB/TrEMBL
	ENSRNOP00000075867.1	UniProtKB/TrEMBL
	ENSRNOP00000088894	ENTREZGENE
	ENSRNOP00000088894.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000574	ENTREZGENE
	ENSRNOT00000000574.7	UniProtKB/TrEMBL
	ENSRNOT00000092469.2	UniProtKB/TrEMBL
	ENSRNOT00000115758	ENTREZGENE
	ENSRNOT00000115758.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7932768	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:294289	UniProtKB/TrEMBL
MGC_CLONE	MGC:124529	IMAGE-MGC_LOAD
NCBI Gene	294289	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 9	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
PhenoGen	Zbtb9	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	Q6MGD2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-11-17	Zbtb9	zinc finger and BTB domain containing 9			Symbol and Name status set to approved	1299863	APPROVED
2005-02-14	Zbtb9	zinc finger and BTB domain containing 9			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar