Tacc2 (transforming, acidic coiled-coil containing protein 2) - Rat Genome Database

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Gene: Tacc2 (transforming, acidic coiled-coil containing protein 2) Rattus norvegicus
Analyze
Symbol: Tacc2
Name: transforming, acidic coiled-coil containing protein 2
RGD ID: 1303004
Description: Predicted to enable nuclear receptor binding activity and protein domain specific binding activity. Predicted to be involved in cerebral cortex development; microtubule cytoskeleton organization; and nuclear migration. Predicted to act upstream of or within astral microtubule organization; nervous system development; and regulation of microtubule-based process. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human TACC2 (transforming acidic coiled-coil containing protein 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: transforming acidic coiled coil 2; transforming acidic coiled-coil containing protein 2 variant 3; transforming acidic coiled-coil-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,546,428 - 194,758,152 (+)NCBIGRCr8
mRatBN7.21185,139,223 - 185,327,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1185,116,111 - 185,327,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1193,489,634 - 193,678,121 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01200,664,540 - 200,857,259 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01193,336,312 - 193,529,026 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01201,140,264 - 201,329,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,055,644 - 201,329,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01208,172,319 - 208,360,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41189,894,937 - 190,085,789 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11190,044,817 - 190,235,670 (+)NCBI
Celera1182,754,424 - 182,942,336 (+)NCBICelera
Cytogenetic Map1q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroethene  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
isoprenaline  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
tributylstannane  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
cytoskeleton  (IEA)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Structure-function evolution of the transforming acidic coiled coil genes revealed by analysis of phylogenetically diverse organisms. Still IH, etal., BMC Evol Biol 2004 Jun 18;4(1):16.
Additional References at PubMed
PMID:17920017   PMID:24700488  


Genomics

Comparative Map Data
Tacc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,546,428 - 194,758,152 (+)NCBIGRCr8
mRatBN7.21185,139,223 - 185,327,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1185,116,111 - 185,327,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1193,489,634 - 193,678,121 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01200,664,540 - 200,857,259 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01193,336,312 - 193,529,026 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01201,140,264 - 201,329,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,055,644 - 201,329,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01208,172,319 - 208,360,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41189,894,937 - 190,085,789 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11190,044,817 - 190,235,670 (+)NCBI
Celera1182,754,424 - 182,942,336 (+)NCBICelera
Cytogenetic Map1q37NCBI
TACC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810121,989,163 - 122,254,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10121,989,163 - 122,254,545 (+)EnsemblGRCh38hg38GRCh38
GRCh3710123,748,678 - 124,014,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610123,738,679 - 124,004,047 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410123,738,678 - 124,004,045NCBI
Celera10117,480,656 - 117,746,439 (+)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10117,379,396 - 117,644,911 (+)NCBIHuRef
CHM1_110124,033,418 - 124,298,674 (+)NCBICHM1_1
T2T-CHM13v2.010122,885,504 - 123,150,842 (+)NCBIT2T-CHM13v2.0
Tacc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397130,154,735 - 130,369,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7130,179,168 - 130,366,515 (+)EnsemblGRCm39 Ensembl
GRCm387130,553,009 - 130,767,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7130,577,438 - 130,764,785 (+)EnsemblGRCm38mm10GRCm38
MGSCv377137,720,998 - 137,908,298 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367130,368,632 - 130,555,930 (+)NCBIMGSCv36mm8
Celera7130,394,504 - 130,580,247 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map773.19NCBI
Tacc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955477338,887 - 552,360 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955477338,990 - 552,100 (+)NCBIChiLan1.0ChiLan1.0
TACC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28133,911,867 - 134,112,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110133,888,632 - 134,118,241 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010118,564,005 - 118,826,292 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110121,976,980 - 122,237,505 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10121,976,980 - 122,237,505 (+)Ensemblpanpan1.1panPan2
TACC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12831,735,673 - 31,943,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2831,735,792 - 31,942,927 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2831,826,123 - 32,018,612 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02832,272,610 - 32,479,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2832,272,677 - 32,479,207 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12831,804,510 - 32,011,531 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02831,825,505 - 32,032,594 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02832,043,943 - 32,237,190 (+)NCBIUU_Cfam_GSD_1.0
Tacc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721314,461,021 - 14,649,020 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648610,912,307 - 11,100,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14131,642,925 - 131,849,817 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114131,770,023 - 131,849,820 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,050,761 - 143,131,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TACC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19114,781,581 - 114,987,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604876,050,915 - 76,285,637 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tacc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473724,471,943 - 24,649,007 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473724,472,104 - 24,685,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tacc2
1357 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:570
Count of miRNA genes:176
Interacting mature miRNAs:205
Transcripts:ENSRNOT00000047161, ENSRNOT00000054937
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1117917486196963478Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1185145134221264292Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
61378Bp43Blood pressure QTL 4322.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1181746937196383668Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1166532971191278129Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1169112897197261052Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1123556856196963478Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
2325725Eae31Experimental allergic encephalomyelitis QTL 31nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1178810256188377506Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
631670Iddm10Insulin dependent diabetes mellitus QTL 101.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1174133260196383668Rat

Markers in Region
D1Rat130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21185,145,134 - 185,145,286 (+)MAPPERmRatBN7.2
Rnor_6.01201,146,802 - 201,146,953NCBIRnor6.0
Rnor_5.01208,178,542 - 208,178,693UniSTSRnor5.0
RGSC_v3.41189,900,686 - 189,900,838RGDRGSC3.4
RGSC_v3.41189,900,687 - 189,900,838UniSTSRGSC3.4
RGSC_v3.11190,050,568 - 190,050,719RGD
Celera1182,760,164 - 182,760,321UniSTS
RH 3.4 Map11420.3RGD
RH 3.4 Map11420.3UniSTS
RH 2.0 Map11000.0RGD
SHRSP x BN Map194.7699RGD
Cytogenetic Map1q37UniSTS
D1Got173  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21185,151,421 - 185,151,602 (+)MAPPERmRatBN7.2
Rnor_6.01201,153,088 - 201,153,268NCBIRnor6.0
Rnor_5.01208,184,679 - 208,184,859UniSTSRnor5.0
RGSC_v3.41189,906,759 - 189,906,940RGDRGSC3.4
RGSC_v3.41189,906,760 - 189,906,940UniSTSRGSC3.4
RGSC_v3.11190,056,641 - 190,056,821RGD
Celera1182,766,399 - 182,766,561UniSTS
RH 3.4 Map11433.79UniSTS
RH 3.4 Map11433.79RGD
RH 2.0 Map11009.9RGD
Cytogenetic Map1q37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001004418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ143743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047161   ⟹   ENSRNOP00000042296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,139,385 - 185,327,881 (+)Ensembl
Rnor_6.0 Ensembl1201,055,644 - 201,329,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000054937   ⟹   ENSRNOP00000051820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,162,430 - 185,327,881 (+)Ensembl
Rnor_6.0 Ensembl1201,055,644 - 201,329,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077908   ⟹   ENSRNOP00000073346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,153,688 - 185,327,881 (+)Ensembl
Rnor_6.0 Ensembl1201,117,630 - 201,329,622 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090143   ⟹   ENSRNOP00000068677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,255,171 - 185,327,440 (+)Ensembl
Rnor_6.0 Ensembl1201,256,910 - 201,329,171 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096415   ⟹   ENSRNOP00000095666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,116,111 - 185,327,881 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100208   ⟹   ENSRNOP00000078070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,139,385 - 185,323,245 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103884   ⟹   ENSRNOP00000092850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,207,792 - 185,327,724 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117206   ⟹   ENSRNOP00000094748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,116,131 - 185,327,378 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119746   ⟹   ENSRNOP00000077927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,207,016 - 185,327,859 (+)Ensembl
RefSeq Acc Id: NM_001004415   ⟹   NP_001004415
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,569,650 - 194,758,152 (+)NCBI
mRatBN7.21185,139,362 - 185,327,881 (+)NCBI
Rnor_6.01201,141,053 - 201,329,612 (+)NCBI
Rnor_5.01208,172,319 - 208,360,445 (+)NCBI
RGSC_v3.41189,894,937 - 190,085,789 (+)RGD
Celera1182,754,424 - 182,942,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001004418   ⟹   NP_001004418
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,569,650 - 194,758,152 (+)NCBI
mRatBN7.21185,139,362 - 185,327,881 (+)NCBI
Rnor_6.01201,141,053 - 201,329,612 (+)NCBI
Rnor_5.01208,172,319 - 208,360,445 (+)NCBI
RGSC_v3.41189,894,937 - 190,085,789 (+)RGD
Celera1182,754,424 - 182,942,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001415936   ⟹   NP_001402865
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,685,161 - 194,758,152 (+)NCBI
mRatBN7.21185,254,883 - 185,327,881 (+)NCBI
RefSeq Acc Id: NM_001415937   ⟹   NP_001402866
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,588,275 - 194,758,152 (+)NCBI
mRatBN7.21185,157,987 - 185,327,881 (+)NCBI
RefSeq Acc Id: XM_008759883   ⟹   XP_008758105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,933 - 194,758,152 (+)NCBI
mRatBN7.21185,254,637 - 185,327,881 (+)NCBI
Rnor_6.01201,256,284 - 201,329,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589222   ⟹   XP_017444711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,927 - 194,758,152 (+)NCBI
mRatBN7.21185,254,633 - 185,327,881 (+)NCBI
Rnor_6.01201,256,284 - 201,329,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589223   ⟹   XP_017444712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,927 - 194,758,152 (+)NCBI
mRatBN7.21185,254,633 - 185,327,881 (+)NCBI
Rnor_6.01201,256,284 - 201,329,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078550   ⟹   XP_038934478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
mRatBN7.21185,139,223 - 185,327,881 (+)NCBI
RefSeq Acc Id: XM_039078566   ⟹   XP_038934494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,935 - 194,758,152 (+)NCBI
mRatBN7.21185,254,638 - 185,327,881 (+)NCBI
RefSeq Acc Id: XM_063263464   ⟹   XP_063119534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263466   ⟹   XP_063119536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263469   ⟹   XP_063119539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263471   ⟹   XP_063119541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263474   ⟹   XP_063119544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263476   ⟹   XP_063119546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263480   ⟹   XP_063119550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263484   ⟹   XP_063119554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263487   ⟹   XP_063119557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263488   ⟹   XP_063119558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263499   ⟹   XP_063119569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,428 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263502   ⟹   XP_063119572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,589,489 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263505   ⟹   XP_063119575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263507   ⟹   XP_063119577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,439 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263513   ⟹   XP_063119583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263516   ⟹   XP_063119586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263519   ⟹   XP_063119589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,588,277 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263527   ⟹   XP_063119597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,428 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263532   ⟹   XP_063119602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,439 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263537   ⟹   XP_063119607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,211 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263543   ⟹   XP_063119613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,927 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263550   ⟹   XP_063119620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,933 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263555   ⟹   XP_063119625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,926 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263560   ⟹   XP_063119630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,932 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263562   ⟹   XP_063119632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,454 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263565   ⟹   XP_063119635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263569   ⟹   XP_063119639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,144 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263577   ⟹   XP_063119647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,222 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263589   ⟹   XP_063119659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,928 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263591   ⟹   XP_063119661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,934 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263592   ⟹   XP_063119662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263597   ⟹   XP_063119667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,120 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263606   ⟹   XP_063119676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,929 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263607   ⟹   XP_063119677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263611   ⟹   XP_063119681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263612   ⟹   XP_063119682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263613   ⟹   XP_063119683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,637,338 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263617   ⟹   XP_063119687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,569,511 - 194,758,152 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001004415 (Get FASTA)   NCBI Sequence Viewer  
  NP_001004418 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402865 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402866 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758105 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444711 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444712 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934478 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934494 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119534 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119536 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119539 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119541 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119544 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119546 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119550 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119554 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119557 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119558 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119569 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119572 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119575 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119577 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119583 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119589 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119602 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119635 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119639 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119647 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119659 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119661 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119662 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119667 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119676 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119677 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119681 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119682 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119683 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119687 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHV83439 (Get FASTA)   NCBI Sequence Viewer  
  EDM17141 (Get FASTA)   NCBI Sequence Viewer  
  EDM17142 (Get FASTA)   NCBI Sequence Viewer  
  EDM17143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042296.3
  ENSRNOP00000051820.3
  ENSRNOP00000068677.2
  ENSRNOP00000073346.2
  ENSRNOP00000077927.1
  ENSRNOP00000078070.1
  ENSRNOP00000092850.1
  ENSRNOP00000094748.1
  ENSRNOP00000095666.1
RefSeq Acc Id: NP_001004415   ⟸   NM_001004415
- Peptide Label: isoform 1
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001004418   ⟸   NM_001004418
- Peptide Label: isoform 2
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758105   ⟸   XM_008759883
- Peptide Label: isoform X32
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444711   ⟸   XM_017589222
- Peptide Label: isoform X25
- UniProtKB: A0A0G2JTE3 (UniProtKB/TrEMBL),   D4A858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444712   ⟸   XM_017589223
- Peptide Label: isoform X30
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068677   ⟸   ENSRNOT00000090143
Ensembl Acc Id: ENSRNOP00000073346   ⟸   ENSRNOT00000077908
Ensembl Acc Id: ENSRNOP00000042296   ⟸   ENSRNOT00000047161
Ensembl Acc Id: ENSRNOP00000051820   ⟸   ENSRNOT00000054937
RefSeq Acc Id: XP_038934478   ⟸   XM_039078550
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038934494   ⟸   XM_039078566
- Peptide Label: isoform X37
- UniProtKB: A6IA38 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078070   ⟸   ENSRNOT00000100208
Ensembl Acc Id: ENSRNOP00000094748   ⟸   ENSRNOT00000117206
Ensembl Acc Id: ENSRNOP00000092850   ⟸   ENSRNOT00000103884
Ensembl Acc Id: ENSRNOP00000077927   ⟸   ENSRNOT00000119746
Ensembl Acc Id: ENSRNOP00000095666   ⟸   ENSRNOT00000096415
RefSeq Acc Id: NP_001402866   ⟸   NM_001415937
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001402865   ⟸   NM_001415936
- Peptide Label: isoform 3
- UniProtKB: X4YHC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119569   ⟸   XM_063263499
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063119597   ⟸   XM_063263527
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063119577   ⟸   XM_063263507
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063119602   ⟸   XM_063263532
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063119632   ⟸   XM_063263562
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063119687   ⟸   XM_063263617
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063119589   ⟸   XM_063263519
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063119572   ⟸   XM_063263502
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119539   ⟸   XM_063263469
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119557   ⟸   XM_063263487
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119541   ⟸   XM_063263471
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119550   ⟸   XM_063263480
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119575   ⟸   XM_063263505
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063119534   ⟸   XM_063263464
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119546   ⟸   XM_063263476
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119554   ⟸   XM_063263484
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063119583   ⟸   XM_063263513
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063119536   ⟸   XM_063263466
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119558   ⟸   XM_063263488
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063119586   ⟸   XM_063263516
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063119544   ⟸   XM_063263474
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119683   ⟸   XM_063263613
- Peptide Label: isoform X41
RefSeq Acc Id: XP_063119635   ⟸   XM_063263565
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063119662   ⟸   XM_063263592
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063119677   ⟸   XM_063263607
- Peptide Label: isoform X39
- UniProtKB: A0A8I5XWM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119681   ⟸   XM_063263611
- Peptide Label: isoform X40
- UniProtKB: A0A8I6AEP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119682   ⟸   XM_063263612
- Peptide Label: isoform X39
- UniProtKB: A0A8I5XWM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119625   ⟸   XM_063263555
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063119613   ⟸   XM_063263543
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063119659   ⟸   XM_063263589
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063119676   ⟸   XM_063263606
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063119630   ⟸   XM_063263560
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063119620   ⟸   XM_063263550
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063119661   ⟸   XM_063263591
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063119667   ⟸   XM_063263597
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063119639   ⟸   XM_063263569
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063119607   ⟸   XM_063263537
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063119647   ⟸   XM_063263577
- Peptide Label: isoform X31
Protein Domains
Transforming acidic coiled-coil-containing protein

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303004 AgrOrtholog
BioCyc Gene G2FUF-57253 BioCyc
Ensembl Genes ENSRNOG00000020457 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047161.5 UniProtKB/TrEMBL
  ENSRNOT00000054937.6 UniProtKB/TrEMBL
  ENSRNOT00000077908.2 UniProtKB/TrEMBL
  ENSRNOT00000090143.2 UniProtKB/TrEMBL
  ENSRNOT00000096415.1 UniProtKB/TrEMBL
  ENSRNOT00000100208.1 UniProtKB/TrEMBL
  ENSRNOT00000103884.1 UniProtKB/TrEMBL
  ENSRNOT00000117206.1 UniProtKB/TrEMBL
  ENSRNOT00000119746.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro Alp7/TACC UniProtKB/TrEMBL
  TACC UniProtKB/TrEMBL
NCBI Gene 309025 ENTREZGENE
PANTHER PTHR13924 UniProtKB/TrEMBL
  TRANSFORMING ACIDIC COILED-COIL PROTEIN, ISOFORM K UniProtKB/TrEMBL
  TRANSFORMING ACIDIC COILED-COIL-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam TACC UniProtKB/TrEMBL
PhenoGen Tacc2 PhenoGen
RatGTEx ENSRNOG00000020457 RatGTEx
UniProt A0A0G2JTE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K598_RAT UniProtKB/TrEMBL
  A0A8I5XWM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y8E6_RAT UniProtKB/TrEMBL
  A0A8I6AEP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AK68_RAT UniProtKB/TrEMBL
  A0A8I6AM72_RAT UniProtKB/TrEMBL
  A6IA37_RAT UniProtKB/TrEMBL
  A6IA38 ENTREZGENE, UniProtKB/TrEMBL
  A6IA39_RAT UniProtKB/TrEMBL
  D3ZXK3 ENTREZGENE, UniProtKB/TrEMBL
  D4A858 ENTREZGENE, UniProtKB/TrEMBL
  X4YHC6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Tacc2  transforming, acidic coiled-coil containing protein 2    transforming acidic coiled coil 2  Name updated 1299863 APPROVED
2005-02-14 Tacc2  transforming acidic coiled coil 2      Symbol and Name status set to provisional 70820 PROVISIONAL