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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Dhx16 | Rat | Neuromuscular Oculoauditory Syndrome | | ISO | DHX16 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Dhx16 | Rat | Neuromuscular Oculoauditory Syndrome | | ISO | DHX16 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Functions of the DExD/H-box proteins in nuclear pre-mRNA splicing. | Chang TH, etal., Biochim Biophys Acta. 2013 Aug;1829(8):764-74. doi: 10.1016/j.bbagrm.2013.02.006. Epub 2013 Feb 21. |
2. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
3. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
4. | Cloning and characterization of a human DEAH-box RNA helicase, a functional homolog of fission yeast Cdc28/Prp8. | Imamura O, etal., Nucleic Acids Res 1998 May 1;26(9):2063-8. |
5. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
6. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
7. | GOA pipeline | RGD automated data pipeline |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
9. | Comprehensive gene review and curation | RGD comprehensive gene curation |
PMID:20423332 | PMID:22658674 | PMID:22681889 | PMID:25296192 | PMID:29360106 |
Dhx16 (Rattus norvegicus - Norway rat) |
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DHX16 (Homo sapiens - human) |
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Dhx16 (Mus musculus - house mouse) |
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Dhx16 (Chinchilla lanigera - long-tailed chinchilla) |
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DHX16 (Pan paniscus - bonobo/pygmy chimpanzee) |
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DHX16 (Canis lupus familiaris - dog) |
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Dhx16 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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DHX16 (Sus scrofa - pig) |
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DHX16 (Chlorocebus sabaeus - green monkey) |
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Dhx16 (Heterocephalus glaber - naked mole-rat) |
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Variants in Dhx16
84 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH131668 |
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AI450394 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_212496 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039098480 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098481 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098482 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098483 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063278997 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BX883048 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223372 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000065025 ⟹ ENSRNOP00000062603 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000080770 ⟹ ENSRNOP00000075570 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000089550 ⟹ ENSRNOP00000072216 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_212496 ⟹ NP_997661 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039098480 ⟹ XP_038954408 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039098481 ⟹ XP_038954409 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039098482 ⟹ XP_038954410 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039098483 ⟹ XP_038954411 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039098484 ⟹ XP_038954412 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063278997 ⟹ XP_063135067 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_997661 | (Get FASTA) | NCBI Sequence Viewer |
XP_038954408 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038954409 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038954410 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038954411 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038954412 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135067 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | CAE84034 | (Get FASTA) | NCBI Sequence Viewer |
EDL86735 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000072216.2 |
RefSeq Acc Id: | NP_997661 ⟸ NM_212496 |
- UniProtKB: | D3ZB40 (UniProtKB/TrEMBL), A0A9K3Y7B8 (UniProtKB/TrEMBL), A0A0G2K2E8 (UniProtKB/TrEMBL), Q6MG13 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000075570 ⟸ ENSRNOT00000080770 |
Ensembl Acc Id: | ENSRNOP00000062603 ⟸ ENSRNOT00000065025 |
Ensembl Acc Id: | ENSRNOP00000072216 ⟸ ENSRNOT00000089550 |
RefSeq Acc Id: | XP_038954412 ⟸ XM_039098484 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038954409 ⟸ XM_039098481 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038954408 ⟸ XM_039098480 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038954410 ⟸ XM_039098482 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038954411 ⟸ XM_039098483 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063135067 ⟸ XM_063278997 |
- Peptide Label: | isoform X4 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6MG13-F1-model_v2 | AlphaFold | Q6MG13 | 1-1044 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701300 | ||||||||
Promoter ID: | EPDNEW_R11821 | ||||||||
Type: | initiation region | ||||||||
Name: | Dhx16_1 | ||||||||
Description: | DEAH-box helicase 16 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1302963 | AgrOrtholog |
BioCyc Gene | G2FUF-4783 | BioCyc |
Ensembl Genes | ENSRNOG00000030157 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000089550.2 | UniProtKB/TrEMBL |
Gene3D-CATH | 1.20.120.1080 | UniProtKB/TrEMBL |
3.40.50.300 | UniProtKB/TrEMBL | |
InterPro | DEAD-like_N | UniProtKB/TrEMBL |
DNA/RNA_helicase_C | UniProtKB/TrEMBL | |
DNA/RNA_helicase_DEAD/DEAH_N | UniProtKB/TrEMBL | |
DNA/RNA_helicase_DEAH_CS | UniProtKB/TrEMBL | |
DUF1605 | UniProtKB/TrEMBL | |
HA2_WH | UniProtKB/TrEMBL | |
Helicase-assoc_dom | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
KEGG Report | rno:294232 | UniProtKB/TrEMBL |
NCBI Gene | 294232 | ENTREZGENE |
PANTHER | ATP-DEPENDENT RNA HELICASE | UniProtKB/TrEMBL |
PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX16 | UniProtKB/TrEMBL | |
Pfam | DEAD | UniProtKB/TrEMBL |
DUF1605 | UniProtKB/TrEMBL | |
HA2 | UniProtKB/TrEMBL | |
HA2_C | UniProtKB/TrEMBL | |
Helicase_C | UniProtKB/TrEMBL | |
PhenoGen | Dhx16 | PhenoGen |
PROSITE | DEAH_ATP_HELICASE | UniProtKB/TrEMBL |
HELICASE_ATP_BIND_1 | UniProtKB/TrEMBL | |
HELICASE_CTER | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000030157 | RatGTEx |
SMART | DEXDc | UniProtKB/TrEMBL |
HA2 | UniProtKB/TrEMBL | |
HELICc | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF52540 | UniProtKB/TrEMBL |
UniProt | A0A0G2K2E8 | ENTREZGENE |
A0A9K3Y7B8 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZB40 | ENTREZGENE | |
Q6MG13 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | A0A0G2K2E8 | UniProtKB/TrEMBL |
D3ZB40 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-01-13 | Dhx16 | DEAH-box helicase 16 | Dhx16 | DEAH (Asp-Glu-Ala-His) box polypeptide 16 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-03-30 | Dhx16 | DEAH (Asp-Glu-Ala-His) box polypeptide 16 | Ddx16 | Symbol updated | 1299863 | APPROVED | |
2005-02-14 | Ddx16 | DEAH (Asp-Glu-Ala-His) box polypeptide 16 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |