Bcap31 (B-cell receptor-associated protein 31)

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Gene: Bcap31 (B-cell receptor-associated protein 31) Rattus norvegicus

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Symbol:

Bcap31

Name:

B-cell receptor-associated protein 31

RGD ID:

1302944

Description:

Predicted to enable MHC class I protein binding activity. Predicted to be involved in several processes, including positive regulation of proteolysis involved in protein catabolic process; positive regulation of retrograde protein transport, ER to cytosol; and protein localization to organelle. Predicted to act upstream of or within immune response. Located in Golgi cisterna membrane; clathrin-coated vesicle; and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in deafness, dystonia, and cerebral hypomyelination and sensorineural hearing loss. Orthologous to human BCAP31 (B cell receptor associated protein 31); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Bap31; MGC94221; similar to B-cell receptor-associated protein 31

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BCAP31 (B cell receptor associated protein 31)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Bcap31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bcap31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100976022 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BCAP31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bcap31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BCAP31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BCAP31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bcap31 (B cell receptor associated protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	BCAP31 (B cell receptor associated protein 31)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Bcap31 (B cell receptor associated protein 31)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bcap31 (B cell receptor associated protein 31)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13887	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y54G2A.18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YET3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	bcap31	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,548,911 - 156,581,002 (-)	NCBI		GRCr8
mRatBN7.2	X	151,397,567 - 151,429,666 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,397,576 - 151,428,506 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,538,741 - 153,569,200 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,101,972 - 157,132,430 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,773,802 - 154,804,259 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,094,365 - 157,126,397 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,095,937 - 157,126,393 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,843,762 - 152,875,715 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,583,683 - 159,614,143 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	159,658,111 - 159,688,572 (-)	NCBI
Celera	1	136,461,516 - 136,491,976 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

autosomal hemophilia A (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

Chromosome Xq28 Duplication Syndrome (ISO)

deafness, dystonia, and cerebral hypomyelination (ISO)

Developmental Disabilities (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

factor VIII deficiency (ISO)

favism (ISO)

genetic disease (ISO)

immunodeficiency 33 (ISO)

microcephaly (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

sensorineural hearing loss (ISO)

severe congenital encephalopathy due to MECP2 mutation (ISO)

Splenomegaly (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

aconitine (EXP)

acrylamide (EXP,ISO)

all-trans-retinoic acid (ISO)

aminoglutethimide (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cisplatin (ISO)

cocaine (EXP)

crocidolite asbestos (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

indometacin (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lanthanum trichloride (EXP)

lead(0) (ISO)

methapyrilene (ISO)

methidathion (ISO)

N-ethyl-N-nitrosourea (ISO)

N-methyl-4-phenylpyridinium (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

endoplasmic reticulum to Golgi vesicle-mediated transport (IBA,ISO)

immune response (ISO)

intracellular protein transport (IEA)

positive regulation of ERAD pathway (ISO)

positive regulation of intrinsic apoptotic signaling pathway (ISO)

positive regulation of retrograde protein transport, ER to cytosol (ISO)

positive regulation of ubiquitin-dependent protein catabolic process (ISO)

protein localization to endoplasmic reticulum exit site (IBA,ISO)

protein targeting to mitochondrion (ISO)

response to endoplasmic reticulum stress (ISO)

spermatogenesis (ISO)

Cellular Component

clathrin-coated vesicle (IDA)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IBA,IDA)

Golgi cisterna membrane (IDA)

Golgi membrane (ISO)

lipid droplet (ISO)

mitochondria-associated endoplasmic reticulum membrane contact site (ISO)

perinuclear endoplasmic reticulum (ISO)

plasma membrane (ISO)

Molecular Function

MHC class I protein binding (ISO)

protein binding (IPI,ISO)

protein-containing complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Endoplasmic Reticulum-associated degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Export of cellubrevin from the endoplasmic reticulum is controlled by BAP31.	Annaert WG, etal., J Cell Biol. 1997 Dec 15;139(6):1397-410.
2.	Proteomics characterization of abundant Golgi membrane proteins.	Bell AW, etal., J Biol Chem 2001 Feb 16;276(7):5152-65. Epub 2000 Oct 19.
3.	Mutations in BCAP31 cause a severe X-linked phenotype with deafness, dystonia, and central hypomyelination and disorganize the Golgi apparatus.	Cacciagli P, etal., Am J Hum Genet. 2013 Sep 5;93(3):579-86. doi: 10.1016/j.ajhg.2013.07.023.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	Bap29/31 influences the intracellular traffic of MHC class I molecules.	Paquet ME, etal., J Immunol 2004 Jun 15;172(12):7548-55.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation
14.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8612576	PMID:8706661	PMID:14581517	PMID:14741744	PMID:18555783	PMID:19401338	PMID:19857118	PMID:19946888	PMID:21183955	PMID:22871113	PMID:24454821	PMID:25854864

Genomics

Comparative Map Data

Bcap31
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,548,911 - 156,581,002 (-)	NCBI		GRCr8
mRatBN7.2	X	151,397,567 - 151,429,666 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,397,576 - 151,428,506 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,538,741 - 153,569,200 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,101,972 - 157,132,430 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,773,802 - 154,804,259 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,094,365 - 157,126,397 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,095,937 - 157,126,393 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,843,762 - 152,875,715 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,583,683 - 159,614,143 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	159,658,111 - 159,688,572 (-)	NCBI
Celera	1	136,461,516 - 136,491,976 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

BCAP31
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	153,700,492 - 153,724,387 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	153,700,492 - 153,724,565 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	152,965,947 - 152,989,842 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	152,619,146 - 152,643,081 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	152,486,798 - 152,510,734	NCBI
Celera	X	153,199,631 - 153,223,882 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	141,623,032 - 141,647,457 (-)	NCBI		HuRef
CHM1_1	X	152,840,359 - 152,864,610 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	151,974,158 - 151,998,050 (-)	NCBI		T2T-CHM13v2.0

Bcap31
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,729,784 - 72,761,464 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,729,784 - 72,759,781 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,686,178 - 73,717,815 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,686,178 - 73,716,175 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	70,931,522 - 70,961,514 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	69,938,903 - 69,968,895 (-)	NCBI		MGSCv36	mm8
Celera	X	64,939,998 - 64,969,873 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.38	NCBI

Bcap31
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955580	428,644 - 459,168 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955580	429,223 - 459,168 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100976022
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	35,003,213 - 35,006,790 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	35,005,973 - 35,009,550 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	X	153,137,992 - 153,161,628 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	153,137,992 - 153,161,628 (-)	Ensembl	panpan1.1		panPan2

BCAP31
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	121,515,417 - 121,550,373 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	121,507,084 - 121,545,263 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	106,844,790 - 106,879,849 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	124,656,935 - 124,692,012 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	124,656,941 - 124,686,801 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	120,426,370 - 120,461,432 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	122,941,327 - 122,976,452 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	122,703,489 - 122,738,554 (-)	NCBI		UU_Cfam_GSD_1.0

Bcap31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,844,918 - 118,877,048 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936809	582,649 - 615,079 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936809	582,689 - 614,800 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCAP31
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	124,457,001 - 124,484,743 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	124,456,999 - 124,484,923 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	142,021,546 - 142,049,432 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BCAP31
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	128,128,739 - 128,152,617 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	128,128,271 - 128,151,823 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	65,991,062 - 66,018,684 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bcap31
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624946	399,227 - 419,642 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624946	398,901 - 420,767 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Bcap31
28 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	47
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000025813
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat

Markers in Region

RH128478

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	151,397,699 - 151,397,909 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	157,126,057 - 157,126,266	NCBI	Rnor6.0
Rnor_5.0	1	152,875,375 - 152,875,584	UniSTS	Rnor5.0
RGSC_v3.4	X	159,583,814 - 159,584,023	UniSTS	RGSC3.4
Celera	1	136,491,636 - 136,491,845	UniSTS
Cytogenetic Map	X	q37	UniSTS

BE117505

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	151,398,431 - 151,398,643 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	157,125,323 - 157,125,534	NCBI	Rnor6.0
Rnor_5.0	1	152,874,641 - 152,874,852	UniSTS	Rnor5.0
RGSC_v3.4	X	159,584,546 - 159,584,757	UniSTS	RGSC3.4
Celera	1	136,490,902 - 136,491,113	UniSTS
Cytogenetic Map	X	q37	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000091792 ⟹ ENSRNOP00000070305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,397,577 - 151,427,745 (-)	Ensembl
Rnor_6.0 Ensembl	X	157,095,937 - 157,126,393 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099703 ⟹ ENSRNOP00000082446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,397,576 - 151,428,047 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100090 ⟹ ENSRNOP00000082335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,397,577 - 151,428,506 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107086 ⟹ ENSRNOP00000083599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,397,579 - 151,427,993 (-)	Ensembl

RefSeq Acc Id:

NM_001004224 ⟹ NP_001004224

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,548,911 - 156,579,371 (-)	NCBI
mRatBN7.2	X	151,397,569 - 151,428,035 (-)	NCBI
Rnor_6.0	X	157,095,937 - 157,126,397 (+)	NCBI
Rnor_5.0	1	152,843,762 - 152,875,715 (+)	NCBI
RGSC_v3.4	X	159,583,683 - 159,614,143 (-)	RGD
Celera	1	136,461,516 - 136,491,976 (+)	NCBI

Sequence:

show sequence

GAGTTTGGTAGTTGCAGTGGGGCGTGCGCGTAGGCTGAAACTCGGAAACAAGCTCCTATCCATC
TGTTGGAAACCTTTAAGTCACAGGATGAGTCTGCAGTGGACTGCAGTTGCCACCTTCCTCTACG
CAGAGGTCTTTGCTGTGTTGCTTCTCTGCATTCCCTTCATTTCTCCCAAAAGATGGCAGAAGAT
TTTTAAATCTCGGCTGGTTGAGTTGGTAGTGACCTATGGCAACACTTTCTTTGTGGTTCTCATC
GTCATCCTTGTGCTGTTGGTCATTGATGCTGTACGTGAGATCCGGAAATATGATGATGTAACAG
AAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCGTGC
TCAGAGGAATCTCTATATTGCTGGCTTTTCCTTGCTGCTGTCCTTCCTGCTTAGACGCCTGGTG
ACTCTCATCTCCCAGCAGGCCACACTGCTGGCCTCCAATGAAGCCTTTAAAAAGCAGGCAGAAA
GTGCCAGTGAGGCAGCCAAGAAATACATGGAGGAGAATGATCAGCTAAAGAAGGGAACTGCTGA
GGATGGAGGCAAGTTGGATGTTGGGAGTCCTGAAATGAAGTTAGAGGAGAACAAGATCCTGAAG
ACTGATCTGAAGAAGCTAAAAGATGAGCTGGCCAGCACCAAGAAAAAACTTGAGAAAGCTGAAA
ACGAGGCTCTGGCTATGCAGAAGCAGTCTGAGGGCCTTACCAAAGAATATGACCGTCTGCTAGA
AGAGCACGCCAAGCTGCAGGCCTCAGTACGTGGTCCCTCAGACAAGAAGGAGGAGTAAAGACTT
GGTTTTTCCCTGCCTGTAGCTGGCTTATACTTGACCCATGCTTACTGCTTCCTTGGAGCCCAGC
CTGTCCCTCTGGTACTTGGTTTATTCCCTTCCATTTCCCCAATTTTCTTCCATGGCTTATAGAT
CATTTTGGCCCCATTACACATACTACTCTTATACCAAAAAGGACCTGATTGTTGTTCATTCACA
GTAATTTTGCCACTGTTCTGCCTGGCCAGGGCACTTTCCACTCCTAGAAGTGTAGAAAAGCACT
GGTGACCTGGGCTGCACTTGTACTCCATTTTATTTTGCCATGTATCCTAAAAGAGGCTGCTGTT
AAGCAGGTCAACTGTTTTATCCTGAGGGGAATAAATGTTGTTATGTTACAAGGAAAAAAAAAAA
AAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006229556 ⟹ XP_006229618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,548,916 - 156,581,002 (-)	NCBI
mRatBN7.2	X	151,397,569 - 151,429,666 (-)	NCBI
Rnor_6.0	X	157,094,365 - 157,126,397 (+)	NCBI
Rnor_5.0	1	152,843,762 - 152,875,715 (+)	NCBI

Sequence:

show sequence

CCTCGGGATCGGGCAGCTCGAAGAAGAGTGTAGGAGGTCACAGCCACATCCAGGAGTGGCTTGG
TCAGGTTGGAATAAAGGAAACAAGCTCCTATCCATCTGTTGGAAACCTTTAAGTCACAGGATGA
GTCTGCAGTGGACTGCAGTTGCCACCTTCCTCTACGCAGAGGTCTTTGCTGTGTTGCTTCTCTG
CATTCCCTTCATTTCTCCCAAAAGATGGCAGAAGATTTTTAAATCTCGGCTGGTTGAGTTGGTA
GTGACCTATGGCAACACTTTCTTTGTGGTTCTCATCGTCATCCTTGTGCTGTTGGTCATTGATG
CTGTACGTGAGATCCGGAAATATGATGATGTAACAGAAAAGGTGAACCTCCAGAACAATCCAGG
TGCCATGGAGCACTTCCACATGAAGCTTTTCCGTGCTCAGAGGAATCTCTATATTGCTGGCTTT
TCCTTGCTGCTGTCCTTCCTGCTTAGACGCCTGGTGACTCTCATCTCCCAGCAGGCCACACTGC
TGGCCTCCAATGAAGCCTTTAAAAAGCAGGCAGAAAGTGCCAGTGAGGCAGCCAAGAAATACAT
GGAGGAGAATGATCAGCTAAAGAAGGGAACTGCTGAGGATGGAGGCAAGTTGGATGTTGGGAGT
CCTGAAATGAAGTTAGAGGAGAACAAGATCCTGAAGACTGATCTGAAGAAGCTAAAAGATGAGC
TGGCCAGCACCAAGAAAAAACTTGAGAAAGCTGAAAACGAGGCTCTGGCTATGCAGAAGCAGTC
TGAGGGCCTTACCAAAGAATATGACCGTCTGCTAGAAGAGCACGCCAAGCTGCAGGCCTCAGTA
CGTGGTCCCTCAGACAAGAAGGAGGAGTAAAGACTTGGTTTTTCCCTGCCTGTAGCTGGCTTAT
ACTTGACCCATGCTTACTGCTTCCTTGGAGCCCAGCCTGTCCCTCTGGTACTTGGTTTATTCCC
TTCCATTTCCCCAATTTTCTTCCATGGCTTATAGATCATTTTGGCCCCATTACACATACTACTC
TTATACCAAAAAGGACCTGATTGTTGTTCATTCACAGTAATTTTGCCACTGTTCTGCCTGGCCA
GGGCACTTTCCACTCCTAGAAGTGTAGAAAAGCACTGGTGACCTGGGCTGCACTTGTACTCCAT
TTTATTTTGCCATGTATCCTAAAAGAGGCTGCTGTTAAGCAGGTCAACTGTTTTATCCTGAGGG
GAATAAATGTTGTTATGTTACAAGG

hide sequence

RefSeq Acc Id:

XM_006229557 ⟹ XP_006229619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,548,916 - 156,579,649 (-)	NCBI
mRatBN7.2	X	151,397,567 - 151,428,306 (-)	NCBI
Rnor_6.0	X	157,095,679 - 157,126,397 (+)	NCBI
Rnor_5.0	1	152,843,762 - 152,875,715 (+)	NCBI

Sequence:

show sequence

GGCTAGAGAAGCGGCCTTAGCCTTCCCGCCAAGTCTCCTCCAAGCTCCACCCCTGCATGTCCGA
AGTGTCGGAGGCGAGGCATTCAGCTGCCAACCTCTACTTCCTTTCAAGACCTTGGAAACAAGCT
CCTATCCATCTGTTGGAAACCTTTAAGTCACAGGATGAGTCTGCAGTGGACTGCAGTTGCCACC
TTCCTCTACGCAGAGGTCTTTGCTGTGTTGCTTCTCTGCATTCCCTTCATTTCTCCCAAAAGAT
GGCAGAAGATTTTTAAATCTCGGCTGGTTGAGTTGGTAGTGACCTATGGCAACACTTTCTTTGT
GGTTCTCATCGTCATCCTTGTGCTGTTGGTCATTGATGCTGTACGTGAGATCCGGAAATATGAT
GATGTAACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGC
TTTTCCGTGCTCAGAGGAATCTCTATATTGCTGGCTTTTCCTTGCTGCTGTCCTTCCTGCTTAG
ACGCCTGGTGACTCTCATCTCCCAGCAGGCCACACTGCTGGCCTCCAATGAAGCCTTTAAAAAG
CAGGCAGAAAGTGCCAGTGAGGCAGCCAAGAAATACATGGAGGAGAATGATCAGCTAAAGAAGG
GAACTGCTGAGGATGGAGGCAAGTTGGATGTTGGGAGTCCTGAAATGAAGTTAGAGGAGAACAA
GATCCTGAAGACTGATCTGAAGAAGCTAAAAGATGAGCTGGCCAGCACCAAGAAAAAACTTGAG
AAAGCTGAAAACGAGGCTCTGGCTATGCAGAAGCAGTCTGAGGGCCTTACCAAAGAATATGACC
GTCTGCTAGAAGAGCACGCCAAGCTGCAGGCCTCAGTACGTGGTCCCTCAGACAAGAAGGAGGA
GTAAAGACTTGGTTTTTCCCTGCCTGTAGCTGGCTTATACTTGACCCATGCTTACTGCTTCCTT
GGAGCCCAGCCTGTCCCTCTGGTACTTGGTTTATTCCCTTCCATTTCCCCAATTTTCTTCCATG
GCTTATAGATCATTTTGGCCCCATTACACATACTACTCTTATACCAAAAAGGACCTGATTGTTG
TTCATTCACAGTAATTTTGCCACTGTTCTGCCTGGCCAGGGCACTTTCCACTCCTAGAAGTGTA
GAAAAGCACTGGTGACCTGGGCTGCACTTGTACTCCATTTTATTTTGCCATGTATCCTAAAAGA
GGCTGCTGTTAAGCAGGTCAACTGTTTTATCCTGAGGGGAATAAATGTTGTTATGTTACAAGG

hide sequence

RefSeq Acc Id:

XM_039099529 ⟹ XP_038955457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,548,916 - 156,579,330 (-)	NCBI
mRatBN7.2	X	151,397,567 - 151,427,994 (-)	NCBI

RefSeq Acc Id:

XM_063279836 ⟹ XP_063135906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,548,916 - 156,579,437 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004224	(Get FASTA)	NCBI Sequence Viewer
	XP_006229618	(Get FASTA)	NCBI Sequence Viewer
	XP_006229619	(Get FASTA)	NCBI Sequence Viewer
	XP_038955457	(Get FASTA)	NCBI Sequence Viewer
	XP_063135906	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79182	(Get FASTA)	NCBI Sequence Viewer
	EDL85027	(Get FASTA)	NCBI Sequence Viewer
	EDL85028	(Get FASTA)	NCBI Sequence Viewer
	EDL85029	(Get FASTA)	NCBI Sequence Viewer
	EDL85030	(Get FASTA)	NCBI Sequence Viewer
	EDL85031	(Get FASTA)	NCBI Sequence Viewer
	EDL85032	(Get FASTA)	NCBI Sequence Viewer
	EDL85033	(Get FASTA)	NCBI Sequence Viewer
	EDL85034	(Get FASTA)	NCBI Sequence Viewer
	EDL85035	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070305.2
	ENSRNOP00000082335.1
	ENSRNOP00000082446.1
	ENSRNOP00000083599.1

RefSeq Acc Id:

NP_001004224 ⟸ NM_001004224

- UniProtKB:

Q6AY58 (UniProtKB/TrEMBL), A0A8I5ZTY8 (UniProtKB/TrEMBL), A0A0G2JXK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVI
DAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQAT
LLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKD
ELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE

hide sequence

RefSeq Acc Id:	XP_006229618 ⟸ XM_006229556
- Peptide Label:	isoform X2
- UniProtKB:	Q6AY58 (UniProtKB/TrEMBL), A0A8I5ZTY8 (UniProtKB/TrEMBL), A0A0G2JXK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVI DAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQAT LLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKD ELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE hide sequence

RefSeq Acc Id:	XP_006229619 ⟸ XM_006229557
- Peptide Label:	isoform X2
- UniProtKB:	Q6AY58 (UniProtKB/TrEMBL), A0A8I5ZTY8 (UniProtKB/TrEMBL), A0A0G2JXK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVI DAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQAT LLASNEAFKKQAESASEAAKKYMEENDQLKKGTAEDGGKLDVGSPEMKLEENKILKTDLKKLKD ELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGPSDKKEE hide sequence

Ensembl Acc Id:

ENSRNOP00000070305 ⟸ ENSRNOT00000091792

RefSeq Acc Id:	XP_038955457 ⟸ XM_039099529
- Peptide Label:	isoform X2
- UniProtKB:	Q6AY58 (UniProtKB/TrEMBL), A0A8I5ZTY8 (UniProtKB/TrEMBL), A0A0G2JXK2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083599 ⟸ ENSRNOT00000107086

Ensembl Acc Id:

ENSRNOP00000082335 ⟸ ENSRNOT00000100090

Ensembl Acc Id:

ENSRNOP00000082446 ⟸ ENSRNOT00000099703

RefSeq Acc Id:	XP_063135906 ⟸ XM_063279836
- Peptide Label:	isoform X1

Protein Domains

BAP29/BAP31 transmembrane Bap31/Bap29 cytoplasmic coiled-coil

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY58-F1-model_v2	AlphaFold	Q6AY58	1-245	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13702056

Promoter ID:

EPDNEW_R12580

Type:

initiation region

Name:

Bcap31_1

Description:

B-cell receptor-associated protein 31

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	157,095,946 - 157,096,006	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1302944	AgrOrtholog
BioCyc Gene	G2FUF-667	BioCyc
Ensembl Genes	ENSRNOG00000055756	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000091792.2	UniProtKB/TrEMBL
	ENSRNOT00000099703.1	UniProtKB/TrEMBL
	ENSRNOT00000100090.1	UniProtKB/TrEMBL
	ENSRNOT00000107086.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7130880	IMAGE-MGC_LOAD
InterPro	BAP29/BAP31_N	UniProtKB/TrEMBL
	Bap31	UniProtKB/TrEMBL
	Bap31/Bap29_C	UniProtKB/TrEMBL
KEGG Report	rno:293852	UniProtKB/TrEMBL
MGC_CLONE	MGC:94221	IMAGE-MGC_LOAD
NCBI Gene	293852	ENTREZGENE
PANTHER	B-CELL RECEPTOR-ASSOCIATED PROTEIN 31	UniProtKB/TrEMBL
	Bap31	UniProtKB/TrEMBL
Pfam	Bap31	UniProtKB/TrEMBL
	Bap31_Bap29_C	UniProtKB/TrEMBL
PhenoGen	Bcap31	PhenoGen
RatGTEx	ENSRNOG00000055756	RatGTEx
UniProt	A0A0G2JXK2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZTY8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZWB7_RAT	UniProtKB/TrEMBL
	A0A8I5ZX74_RAT	UniProtKB/TrEMBL
	A6KRW2_RAT	UniProtKB/TrEMBL
	A6KRW6_RAT	UniProtKB/TrEMBL
	A6KRW9_RAT	UniProtKB/TrEMBL
	Q6AY58	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Bcap31	B-cell receptor-associated protein 31	MGC94221	similar to B-cell receptor-associated protein 31	Symbol and Name updated	1299863	APPROVED
2005-02-14	MGC94221	similar to B-cell receptor-associated protein 31			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)