Zbtb16<sup>Lx</sup> (zinc finger and BTB domain containing 16, Lx mutant) - Rat Genome Database

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Gene: Zbtb16Lx (zinc finger and BTB domain containing 16, Lx mutant) Rattus norvegicus
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Symbol: Zbtb16Lx
Name: zinc finger and BTB domain containing 16, Lx mutant
RGD ID: 12910834
Description: A spontaneous 2964 bp deletion mutation was identified in the intron 2 of Zbtb16 gene of SHR-Lx PD5(SHR.PD-(D8Rat42-D8Arb23)/Cub) rats.
ASSOCIATED WITH preaxial polydactyly; ASSOCIATED WITH polydactyly
Type: allele  of Zbtb16  
Previously known as: Zbtb16^[Lx]; Zbtb16Lx
Is Marker For: Strains:   SHR.PD-(D8Rat42-D8Arb23)/Cub   SHR.PD-(D8Mgh9-D8Rat149)/Cub  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position: No map positions available.


Disease Annotations     Click to see Annotation Detail View
polydactyly  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Deletion of a conserved noncoding sequence in Plzf intron leads to Plzf down-regulation in limb bud and polydactyly in the rat. Liska F, etal., Dev Dyn. 2009 Mar;238(3):673-84.

Genomics

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Zbtb16Lx-var1 chr8 49163130 49166093 CCTGGGCCAGTGAGCACCTGCACTGGGCTATGTGTCTGTTGTTTGCTCCATGATCCCACTGACCAGATACCACCATGCCAAGAGGCACGCTCCTAATTTCCTCCTGCTGACCCAGATGCATCTGGCTGGGAACCCTGCCCTGTCCACACAGCTTCTACAAGAGCCCATCTTTGTTTCCAGACACCATGTTCTCTCCACTCACCACTCACTATGCAGCCAACCATTGTAGGAAATCTAGGGGGAAAAGGACGGAACAGGGAGAGACAGAGACAGACAGACAAAGACCCTAAAACACTCCTCTCATTGATAAAAACACTCCTCCCATCCACAGCCCACCGATATGCCATATGTCTTCTTTCCCAACTACACACAGGTGCACACACACAGAAGTGCACACTCACAGCCATGCACTCACACATGCACACAGGTGCACAAACATACACGTGCGCACACACACACAGAACATGCATGCACCCACATACAAGGGCTCACACATGCCTGGGTATGCATCCTGGGTCTTATTATTGCATAGCCCTCCAGGCTCAGAAAGAGTTAAGTTACCCTCAGTGCATAAATCAAAAGTTCAAGGCTGCACCACACCACAATGATCTCCTCTTTACATATGACGAGAACCAGAGAGAGGCTACAGTCCCAAGCATCCTGAGTGGGTCTCCCAGGCCCGCACAGGTTACACCGCCGGGGTCAGGGTGGAGGACCTTTAGCAGCAACATTCATTTCCTGAACAGGACAAGCCCTCCTGACCATAAAGCTAATAAGAACTTCCTCGCACGGCCGAGCTCCGGCTGACAGGGCGACTTGTCACCGGTCACGCAGGAGGAAAACGCTGGTTCCCATTAGAGGCTTATGATGCCAGGTGCTCCTAATAAGGCACCTCAGCGAGAAACAAGAGCCTGCTAAGTCCTGGCTCCAACTCTGGAAGTAATCAGGCCCGGGCTTCGGGGATTAAGGAGGGGCCTTCCTTGAAGAAATGGGGGAGGGGGTGGCCTCCGTAGACCCCTGGCAGCCGCTAACCTGCTGAATGACTTAAATAAATAAATTCCCAACCATCCTTCCATTTCTTTCCCAGTCACCATAAAAGACTCCCCCAAATTAACACTAGTAATGCTTCCCCTCCGTACTCTGGGCTTGATGGATTGCCCAGAGGGCCATTACGTTAGGGCCAGATCTGCTTCCCATGGTGGCAAGGAGGGTCGTGCCAACAGTCCTAATGGCACTGAGATCACAACCCTCAGCTAATCCACTTAGCCCAGAAGAGGATGACAAGGGGCTCAGTGGCTCTCCTATCAGGCTGGGGTCACAAGGGAAGTGGAAGGTACATAGGCTACTCCCGACTCCATGCCTGCTGCTACCAGTTAACTCACTCTTTGCTTCTGCATATTACCGCCCCGTCCTGTGTAAAGACCACAGTTTGATGGAGGGTGGGTCTTATTTTTAGCAGGTCCGATGGATGTGCTGCATATCTTTACCGAGACTGGGGACTCCTATGGGCTGAAAAGAACTTAAGACAGGACTAGAGTTTTTACCTCTTCACCAAAATATCGGAAACCAGGTCTTTTAGAAATCCCCCCAGCAGTGCCCTGCTGTTTCAGGAAGTCCTTCCTCTTACCTAACTTGGATGCTTCCTCTGGTAATGCTCAACTCAATCTGTGCACATTGTAGACACTCGGGCCTCAGGGTCAGAGTGGAACGTGAGTTCAGAACTGAGATTCAAACAGGATTTGGGGGAGTTTTAGCCGAAGTTTCCATGCTGACAAGAAAGGGCCAGAGCCCCTCCCCACAGCTGCAGAGTTAAGCTTCGCATAGGCAAAACCCAAGCATAGCTGTTTTCAGACTGAGCCAGCATCATAAGAACACAGGGGCTTTTAAGGGGAAACAGTAAAAGGGGGGGATTTCTGATTCTACTGGCGTGGAATTAACAATGCGGAATTTTTATTTTCGAAAATGGGTTTCTTTTCCCCTCCCTGTTCTGGTTTTTCTGTTTTTCTAGTCAGCATAAATAAAAAGCTAGAGGCCAGTCGCTCTGTCCATAAGCCGTGACTCGGGGCTTCCTGGATCTGTGTGGTCTGGCCCCCTGAACACCTGTTGACTACTGCATTTGCAGGTGACTGGCCTCTGAAGTGACCAGGAGACATGAGAAGCCGGAGCAGCTCCCTCAGCTTTAGGGAAAATGAGTCCTGGTATCCTTCCCTGCTTACCACAGACAAGTCCACTAACCTCTTGGGCTTTCCTTGGCCCTCAGGAATGTAAAACTAACAACCCCCTAACAGGCCAGCTAGGAGCTAACCAGAGCACTTAGCCCAGAAGCTGACATGTGACATTGAAAGCTGTCCCTGAACCACTATGGGAAGGATGCCTAGGGAGAGAGCTCCCAGCCCTTAGCGTTCAATGTGAGACCAGCCCATGATTGCCCGCAGTAAGGTAGTCCCTGTGCCAACTGCCCCTGCACCACAGAGCCCCACACACAGCCCTGAGCATGCAGAGTAGACACCGCCTCTGTGCTCTGCATGTAGGGCTGACAGCAGCAGCACTGCCCAGCTACGTTTAAAGAACTGGCATGAGTCACGAGGCCCTGGGTCAATGGGACAAAGTGTACCCGGACGCCAGGGTGCATCCATCGACTTCCCAGGAAAGCCAAGAGGTGCATGCAGTCAGTCACCACCCCAACACACACACTCACCACAGCAGTTTTACAATGCTGAAGGCATAGACAGGCCATACCGGAGAGCAATGTCTCTGGGAAGCAGGGGTTGAATGACATAGCACGCCGTGAACCTGTACTGCAGGCTTGTCCTTCTGCACAATAGCAATGGCTACCAAATGGCTGACACCTACGGAGCGCATGCATTGTGCGTTTCCATGCGTGGCAAATATTTACACGTCACCCCTTATAATGACCCCCTGAGTGGGTCCTGTTATTCCCATTTTACAAATGAACAGACAGGC - deletion mRatBN7.2
Zbtb16Lx-var1 chr8 53132882 53135845 CCTGGGCCAGTGAGCACCTGCACTGGGCTATGTGTCTGTTGTTTGCTCCATGATCCCACTGACCAGATACCACCATGCCAAGAGGCACGCTCCTAATTTCCTCCTGCTGACCCAGATGCATCTGGCTGGGAACCCTGCCCTGTCCACACAGCTTCTACAAGAGCCCATCTTTGTTTCCAGACACCATGTTCTCTCCACTCACCACTCACTATGCAGCCAACCATTGTAGGAAATCTAGGGGGAAAAGGACGGAACAGGGAGAGACAGAGACAGACAGACAAAGACCCTAAAACACTCCTCTCATTGATAAAAACACTCCTCCCATCCACAGCCCACCGATATGCCATATGTCTTCTTTCCCAACTACACACAGGTGCACACACACAGAAGTGCACACTCACAGCCATGCACTCACACATGCACACAGGTGCACAAACATACACGTGCGCACACACACACAGAACATGCATGCACCCACATACAAGGGCTCACACATGCCTGGGTATGCATCCTGGGTCTTATTATTGCATAGCCCTCCAGGCTCAGAAAGAGTTAAGTTACCCTCAGTGCATAAATCAAAAGTTCAAGGCTGCACCACACCACAATGATCTCCTCTTTACATATGACGAGAACCAGAGAGAGGCTACAGTCCCAAGCATCCTGAGTGGGTCTCCCAGGCCCGCACAGGTTACACCGCCGGGGTCAGGGTGGAGGACCTTTAGCAGCAACATTCATTTCCTGAACAGGACAAGCCCTCCTGACCATAAAGCTAATAAGAACTTCCTCGCACGGCCGAGCTCCGGCTGACAGGGCGACTTGTCACCGGTCACGCAGGAGGAAAACGCTGGTTCCCATTAGAGGCTTATGATGCCAGGTGCTCCTAATAAGGCACCTCAGCGAGAAACAAGAGCCTGCTAAGTCCTGGCTCCAACTCTGGAAGTAATCAGGCCCGGGCTTCGGGGATTAAGGAGGGGCCTTCCTTGAAGAAATGGGGGAGGGGGTGGCCTCCGTAGACCCCTGGCAGCCGCTAACCTGCTGAATGACTTAAATAAATAAATTCCCAACCATCCTTCCATTTCTTTCCCAGTCACCATAAAAGACTCCCCCAAATTAACACTAGTAATGCTTCCCCTCCGTACTCTGGGCTTGATGGATTGCCCAGAGGGCCATTACGTTAGGGCCAGATCTGCTTCCCATGGTGGCAAGGAGGGTCGTGCCAACAGTCCTAATGGCACTGAGATCACAACCCTCAGCTAATCCACTTAGCCCAGAAGAGGATGACAAGGGGCTCAGTGGCTCTCCTATCAGGCTGGGGTCACAAGGGAAGTGGAAGGTACATAGGCTACTCCCGACTCCATGCCTGCTGCTACCAGTTAACTCACTCTTTGCTTCTGCATATTACCGCCCCGTCCTGTGTAAAGACCACAGTTTGATGGAGGGTGGGTCTTATTTTTAGCAGGTCCGATGGATGTGCTGCATATCTTTACCGAGACTGGGGACTCCTATGGGCTGAAAAGAACTTAAGACAGGACTAGAGTTTTTACCTCTTCACCAAAATATCGGAAACCAGGTCTTTTAGAAATCCCCCCAGCAGTGCCCTGCTGTTTCAGGAAGTCCTTCCTCTTACCTAACTTGGATGCTTCCTCTGGTAATGCTCAACTCAATCTGTGCACATTGTAGACACTCGGGCCTCAGGGTCAGAGTGGAACGTGAGTTCAGAACTGAGATTCAAACAGGATTTGGGGGAGTTTTAGCCGAAGTTTCCATGCTGACAAGAAAGGGCCAGAGCCCCTCCCCACAGCTGCAGAGTTAAGCTTCGCATAGGCAAAACCCAAGCATAGCTGTTTTCAGACTGAGCCAGCATCATAAGAACACAGGGGCTTTTAAGGGGAAACAGTAAAAGGGGGGGATTTCTGATTCTACTGGCGTGGAATTAACAATGCGGAATTTTTATTTTCGAAAATGGGTTTCTTTTCCCCTCCCTGTTCTGGTTTTTCTGTTTTTCTAGTCAGCATAAATAAAAAGCTAGAGGCCAGTCGCTCTGTCCATAAGCCGTGACTCGGGGCTTCCTGGATCTGTGTGGTCTGGCCCCCTGAACACCTGTTGACTACTGCATTTGCAGGTGACTGGCCTCTGAAGTGACCAGGAGACATGAGAAGCCGGAGCAGCTCCCTCAGCTTTAGGGAAAATGAGTCCTGGTATCCTTCCCTGCTTACCACAGACAAGTCCACTAACCTCTTGGGCTTTCCTTGGCCCTCAGGAATGTAAAACTAACAACCCCCTAACAGGCCAGCTAGGAGCTAACCAGAGCACTTAGCCCAGAAGCTGACATGTGACATTGAAAGCTGTCCCTGAACCACTATGGGAAGGATGCCTAGGGAGAGAGCTCCCAGCCCTTAGCGTTCAATGTGAGACCAGCCCATGATTGCCCGCAGTAAGGTAGTCCCTGTGCCAACTGCCCCTGCACCACAGAGCCCCACACACAGCCCTGAGCATGCAGAGTAGACACCGCCTCTGTGCTCTGCATGTAGGGCTGACAGCAGCAGCACTGCCCAGCTACGTTTAAAGAACTGGCATGAGTCACGAGGCCCTGGGTCAATGGGACAAAGTGTACCCGGACGCCAGGGTGCATCCATCGACTTCCCAGGAAAGCCAAGAGGTGCATGCAGTCAGTCACCACCCCAACACACACACTCACCACAGCAGTTTTACAATGCTGAAGGCATAGACAGGCCATACCGGAGAGCAATGTCTCTGGGAAGCAGGGGTTGAATGACATAGCACGCCGTGAACCTGTACTGCAGGCTTGTCCTTCTGCACAATAGCAATGGCTACCAAATGGCTGACACCTACGGAGCGCATGCATTGTGCGTTTCCATGCGTGGCAAATATTTACACGTCACCCCTTATAATGACCCCCTGAGTGGGTCCTGTTATTCCCATTTTACAAATGAACAGACAGGC - deletion Rnor_6.0

Related Rat Strains
The following Strains have been annotated to Zbtb16Lx
SHR.PD-(D8Mgh9-D8Rat149)/Cub     SHR.PD-(D8Rat42-D8Arb23)/Cub    


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences


Additional Information