LOC101968779 (HLA class II histocompatibility antigen, DQ beta 1 chain-like) - Rat Genome Database

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Gene: LOC101968779 (HLA class II histocompatibility antigen, DQ beta 1 chain-like) Ictidomys tridecemlineatus
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Symbol: LOC101968779 (Ensembl: HLA-DQB2)
Name: HLA class II histocompatibility antigen, DQ beta 1 chain-like
RGD ID: 12735364
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); protein antigen binding (inferred); toxic substance binding (inferred); INVOLVED IN adaptive immune response (inferred); antigen processing and presentation (inferred); antigen processing and presentation of exogenous peptide antigen via MHC class II (inferred); FOUND IN cell surface (inferred); early endosome (inferred); external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494637,193,219 - 37,200,001 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936727361,398 - 368,532 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936727361,446 - 368,507 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013364642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000009616   ⟹   ENSSTOP00000008626
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936727361,398 - 368,532 (+)Ensembl
RefSeq Acc Id: XM_013364642   ⟹   XP_013220096
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494637,193,219 - 37,200,001 (-)NCBI
SpeTri2.0NW_004936727361,446 - 368,507 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013220096 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008626.3
GenBank Protein KAG3289175 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013220096   ⟸   XM_013364642
- UniProtKB: I3MDW1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000008626   ⟸   ENSSTOT00000009616
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020276 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009616.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  Class II Histocompatibility Antigen, M Beta Chain, Chain B, domain 1 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC/Immunoglobulin UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_II_a/b_N UniProtKB/TrEMBL
  MHC_II_b_N UniProtKB/TrEMBL
NCBI Gene LOC101968779 ENTREZGENE
PANTHER HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ BETA 1 CHAIN UniProtKB/TrEMBL
  MHC CLASS II-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_II_beta UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
  MHC_II_beta UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt I3MDW1 ENTREZGENE, UniProtKB/TrEMBL