Cog6 (component of oligomeric golgi complex 6) - Rat Genome Database

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Gene: Cog6 (component of oligomeric golgi complex 6) Ictidomys tridecemlineatus
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Symbol: Cog6
Name: component of oligomeric golgi complex 6
RGD ID: 12710874
Description: INVOLVED IN glycosylation (inferred); Golgi organization (inferred); intra-Golgi vesicle-mediated transport (inferred); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIl (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); Golgi transport complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: conserved oligomeric Golgi complex subunit 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945162,511,267 - 162,585,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365655,996,270 - 6,069,426 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365655,996,031 - 6,069,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cog6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945162,511,267 - 162,585,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365655,996,270 - 6,069,426 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365655,996,031 - 6,069,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381339,655,627 - 39,791,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1339,655,627 - 39,791,666 (+)Ensemblhg38GRCh38
GRCh371340,229,764 - 40,365,803 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361339,127,814 - 39,224,633 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341339,127,813 - 39,224,632NCBI
Celera1321,282,474 - 21,418,517 (+)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1321,028,744 - 21,165,223 (+)NCBIHuRef
CHM1_11340,197,304 - 40,333,343 (+)NCBICHM1_1
T2T-CHM13v2.01338,874,034 - 39,010,137 (+)NCBIT2T-CHM13v2.0
Cog6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39352,889,544 - 52,924,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl352,889,296 - 52,924,658 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38352,982,123 - 53,017,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl352,981,875 - 53,017,237 (-)Ensemblmm10GRCm38
MGSCv37352,786,045 - 52,821,145 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36353,070,095 - 53,105,130 (-)NCBIMGSCv36mm8
Celera352,710,466 - 52,745,600 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map324.1NCBI
Cog6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82139,212,459 - 139,249,505 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2139,211,678 - 139,249,737 (-)EnsemblGRCr8
mRatBN7.22137,062,127 - 137,099,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2137,061,346 - 137,099,190 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2143,639,424 - 143,676,204 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02141,751,508 - 141,788,288 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02136,383,282 - 136,420,047 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02142,197,566 - 142,235,054 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2142,196,754 - 142,235,066 (-)Ensemblrn6Rnor6.0
Rnor_5.02161,882,713 - 161,921,014 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42142,767,258 - 142,804,731 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2131,560,563 - 131,597,609 (-)NCBICelera
RGSC_v3.12142,717,222 - 142,754,694 (-)NCBI
Cytogenetic Map2q26NCBI
Cog6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554316,637,327 - 6,703,828 (-)Ensembl
ChiLan1.0NW_0049554316,641,116 - 6,703,797 (-)NCBIChiLan1.0ChiLan1.0
COG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21439,186,623 - 39,283,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11330,291,470 - 30,399,625 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01320,872,151 - 20,973,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11339,459,424 - 39,556,002 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1339,459,424 - 39,591,666 (+)EnsemblpanPan2panpan1.1
COG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,428,277 - 1,524,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,331,966 - 1,524,747 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha251,471,940 - 1,621,602 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0251,472,981 - 1,622,702 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl251,472,081 - 1,622,745 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1251,375,174 - 1,524,816 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0251,368,146 - 1,517,792 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0251,434,939 - 1,584,610 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
COG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1114,576,214 - 14,649,795 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11114,576,194 - 14,737,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21114,710,709 - 14,979,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COG6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1318,034,004 - 18,170,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl318,034,066 - 18,130,060 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605726,108,592 - 26,245,376 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cog6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624748444,784 - 520,804 (+)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000024368   ⟹   ENSSTOP00000016854
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365656,006,610 - 6,069,426 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000034276   ⟹   ENSSTOP00000031210
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365655,996,270 - 6,069,426 (-)Ensembl
RefSeq Acc Id: XM_040281910   ⟹   XP_040137844
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945162,511,267 - 162,585,473 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040137844 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016854.2
  ENSSTOP00000031210.1
GenBank Protein KAG3293145 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040137844   ⟸   XM_040281910
- UniProtKB: A0A287DCB3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000031210   ⟸   ENSSTOT00000034276
Ensembl Acc Id: ENSSTOP00000016854   ⟸   ENSSTOT00000024368
Protein Domains
Conserved oligomeric complex COG6 N-terminal   Conserved Oligomeric Golgi complex subunit 6 C-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026615 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024368.2 UniProtKB/TrEMBL
  ENSSTOT00000034276.1 UniProtKB/TrEMBL
InterPro COG6 UniProtKB/TrEMBL
  COG6_C UniProtKB/TrEMBL
  COG6_N UniProtKB/TrEMBL
NCBI Gene Cog6 ENTREZGENE
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 6 UniProtKB/TrEMBL
  PTHR21506 UniProtKB/TrEMBL
Pfam COG6 UniProtKB/TrEMBL
  COG6_C UniProtKB/TrEMBL
SMART COG6 UniProtKB/TrEMBL
UniProt A0A287DCB3 ENTREZGENE, UniProtKB/TrEMBL
  I3MXK9_ICTTR UniProtKB/TrEMBL