Atg9b (autophagy related 9B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Atg9b (autophagy related 9B) Ictidomys tridecemlineatus
Analyze
Symbol: Atg9b
Name: autophagy related 9B
RGD ID: 12710142
Description: INVOLVED IN autophagosome assembly (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog); primary ovarian insufficiency (ortholog); FOUND IN autophagosome (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy-related protein 9B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,447,684 - 6,459,777 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,446,667 - 6,453,511 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,445,824 - 6,453,582 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atg9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,447,684 - 6,459,777 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,446,667 - 6,453,511 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,445,824 - 6,453,582 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,012,209 - 151,024,499 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,012,209 - 151,024,499 (-)EnsemblGRCh38hg38GRCh38
GRCh377150,709,297 - 150,721,586 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,340,233 - 150,352,519 (-)NCBINCBI36Build 36hg18NCBI36
Build 347150,146,953 - 150,159,234NCBI
Celera7145,266,630 - 145,278,919 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,521,635 - 144,533,925 (-)NCBIHuRef
CHM1_17150,717,703 - 150,729,992 (-)NCBICHM1_1
T2T-CHM13v2.07152,185,332 - 152,201,351 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,038,886 - 150,051,176 (-)NCBI
Atg9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,589,179 - 24,597,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,589,179 - 24,597,141 (-)EnsemblGRCm39 Ensembl
GRCm38524,384,181 - 24,392,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,384,181 - 24,392,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37523,889,999 - 23,897,961 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36523,894,246 - 23,902,208 (-)NCBIMGSCv36mm8
Celera521,333,933 - 21,341,895 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.49NCBI
Atg9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,678,548 - 11,686,097 (+)NCBIGRCr8
mRatBN7.2410,784,934 - 10,793,832 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,786,114 - 10,793,651 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,932,374 - 15,939,036 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,752,565 - 11,759,227 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0410,104,349 - 10,111,011 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,314,369 - 7,322,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,314,369 - 7,321,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,325,733 - 7,332,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.446,151,128 - 6,157,788 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera46,400,691 - 6,407,351 (+)NCBICelera
Cytogenetic Map4q11NCBI
Atg9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,458,398 - 5,465,551 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,458,152 - 5,467,260 (-)NCBIChiLan1.0ChiLan1.0
ATG9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,435,449 - 187,449,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,445,713 - 39,459,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,600,894 - 142,614,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,752,882 - 154,764,744 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,756,535 - 154,764,744 (-)Ensemblpanpan1.1panPan2
ATG9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,072,436 - 15,082,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,072,312 - 15,080,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,680,763 - 15,688,684 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,794,726 - 16,802,656 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,795,686 - 16,802,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,167,172 - 15,175,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,748,627 - 15,756,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,799,326 - 15,807,261 (-)NCBIUU_Cfam_GSD_1.0
ATG9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,200,639 - 6,208,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,200,246 - 6,208,988 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,570,334 - 6,579,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,197,387 - 119,209,578 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,198,125 - 119,206,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,164,824 - 15,177,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,591,297 - 5,598,739 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,589,366 - 5,600,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000000891   ⟹   ENSSTOP00000000801
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365276,446,667 - 6,453,511 (-)Ensembl
RefSeq Acc Id: XM_005326662   ⟹   XP_005326719
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,447,684 - 6,459,771 (+)NCBI
SpeTri2.0NW_0049365276,445,824 - 6,453,582 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040291264   ⟹   XP_040147198
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,447,684 - 6,459,771 (+)NCBI
RefSeq Acc Id: XM_040291265   ⟹   XP_040147199
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,447,684 - 6,459,777 (+)NCBI
RefSeq Acc Id: XM_040291266   ⟹   XP_040147200
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,447,684 - 6,459,777 (+)NCBI
RefSeq Acc Id: XM_040291267   ⟹   XP_040147201
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,447,684 - 6,459,771 (+)NCBI
RefSeq Acc Id: XM_040291268   ⟹   XP_040147202
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051186,447,684 - 6,459,777 (+)NCBI
RefSeq Acc Id: XP_005326719   ⟸   XM_005326662
- Peptide Label: isoform X2
- UniProtKB: I3LXJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147199   ⟸   XM_040291265
- Peptide Label: isoform X1
- UniProtKB: I3LXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147200   ⟸   XM_040291266
- Peptide Label: isoform X2
- UniProtKB: I3LXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147202   ⟸   XM_040291268
- Peptide Label: isoform X3
- UniProtKB: I3LXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147198   ⟸   XM_040291264
- Peptide Label: isoform X1
- UniProtKB: I3LXJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147201   ⟸   XM_040291267
- Peptide Label: isoform X3
- UniProtKB: I3LXJ3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000000801   ⟸   ENSSTOT00000000891


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000891 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000891.3 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_9 UniProtKB/TrEMBL
NCBI Gene Atg9b ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 9B UniProtKB/TrEMBL
  PTHR13038 UniProtKB/TrEMBL
Pfam APG9 UniProtKB/TrEMBL
UniProt I3LXJ3 ENTREZGENE, UniProtKB/TrEMBL